Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context PRDM16 63976 broad.mit.edu 36 1 3318574 3318574 + Silent SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 3318574 3318574 PRDM16 1 C C T 27 HEYL 26508 broad.mit.edu 36 1 39877855 39877855 + Silent SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 39877855 39877855 HEYL 1 G G A 39 COL11A1 1301 broad.mit.edu 36 1 103152498 103152498 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 103152498 103152498 COL11A1 1 C C T 25 COL11A1 1301 broad.mit.edu 36 1 103263665 103263665 + Silent SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 103263665 103263665 COL11A1 1 C C T 24 C1orf88 128344 broad.mit.edu 36 1 111692773 111692773 + Missense_Mutation SNP A A C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 111692773 111692773 C1orf88 1 A A C 3 WNT2B 7482 broad.mit.edu 36 1 112861398 112861398 + Missense_Mutation SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 112861398 112861398 WNT2B 1 G G T 42 TAF3 83860 broad.mit.edu 36 10 8047174 8047174 + Silent SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 8047174 8047174 TAF3 10 C C T 17 SEPHS1 22929 broad.mit.edu 36 10 13401294 13401294 + Missense_Mutation SNP A A T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13401294 13401294 SEPHS1 10 A A T 16 C10orf140 387640 broad.mit.edu 36 10 21845211 21845211 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21845211 21845211 C10orf140 10 G G C 37 ZRANB1 54764 broad.mit.edu 36 10 126663340 126663340 + Missense_Mutation SNP A A G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 126663340 126663340 ZRANB1 10 A A G 4 MOB2 81532 broad.mit.edu 36 11 1448161 1448161 + Silent SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 1448161 1448161 MOB2 11 C C T 27 ART1 417 broad.mit.edu 36 11 3637449 3637449 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3637449 3637449 ART1 11 G G A 42 OR51E2 81285 broad.mit.edu 36 11 4659803 4659803 + Missense_Mutation SNP T T C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4659803 4659803 OR51E2 11 T T C 60 TRIM5 85363 broad.mit.edu 36 11 5657570 5657570 + Nonsense_Mutation SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 5657570 5657570 TRIM5 11 G G T 44 ADM 133 broad.mit.edu 36 11 10284120 10284120 + Silent SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 10284120 10284120 ADM 11 C C A 21 TMEM86A 144110 broad.mit.edu 36 11 18679776 18679776 + Missense_Mutation SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18679776 18679776 TMEM86A 11 G G T 44 OR5R1 219479 broad.mit.edu 36 11 55941589 55941589 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55941589 55941589 OR5R1 11 C C A 24 TBC1D10C 374403 broad.mit.edu 36 11 66929688 66929688 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 66929688 66929688 TBC1D10C 11 G G C 42 TECTA 7007 broad.mit.edu 36 11 120528838 120528838 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120528838 120528838 TECTA 11 G G A 40 VWA5A 4013 broad.mit.edu 36 11 123494936 123494936 + Silent SNP C C G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 123494936 123494936 VWA5A 11 C C G 30 CHD4 1108 broad.mit.edu 36 12 6562294 6562294 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6562294 6562294 CHD4 12 C C A 19 SLCO1B3 28234 broad.mit.edu 36 12 20923791 20923791 + Silent SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 20923791 20923791 SLCO1B3 12 C C T 27 SPRYD4 283377 broad.mit.edu 36 12 55149488 55149488 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55149488 55149488 SPRYD4 12 C C A 28 NACA 4666 broad.mit.edu 36 12 55401441 55401441 + Missense_Mutation SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55401441 55401441 NACA 12 G G T 35 STARD13 90627 broad.mit.edu 36 13 32601981 32601981 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32601981 32601981 STARD13 13 G G A 33 FREM2 341640 broad.mit.edu 36 13 38160931 38160931 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38160931 38160931 FREM2 13 G G A 44 DLEU7 220107 broad.mit.edu 36 13 50315471 50315473 + Missense_Mutation TNP GGG GGG TAT novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation TNP 50315471 50315473 DLEU7 13 GGG GGG TAT 39 SNX6 58533 broad.mit.edu 36 14 34120520 34120520 + Silent SNP T T G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 34120520 34120520 SNX6 14 T T G 56 ZBTB25 7597 broad.mit.edu 36 14 64024495 64024495 + Missense_Mutation SNP T T G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64024495 64024495 ZBTB25 14 T T G 60 DYNC1H1 1778 broad.mit.edu 36 14 101531342 101531342 + Silent SNP T T C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 101531342 101531342 DYNC1H1 14 T T C 51 CATSPER2 117155 broad.mit.edu 36 15 41727460 41727460 + Missense_Mutation SNP T T A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41727460 41727460 CATSPER2 15 T T A 51 IGDCC3 9543 broad.mit.edu 36 15 63411349 63411349 + Silent SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 63411349 63411349 IGDCC3 15 C C T 26 DPP8 54878 broad.mit.edu 36 15 63586648 63586648 + Silent SNP A A G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 63586648 63586648 DPP8 15 A A G 1 SYNM 23336 broad.mit.edu 36 15 97489440 97489440 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97489440 97489440 SYNM 15 G G C 41 ELMO3 79767 broad.mit.edu 36 16 65793434 65793434 + Silent SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 65793434 65793434 ELMO3 16 G G T 47 FUK 197258 broad.mit.edu 36 16 69070777 69070777 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69070777 69070777 FUK 16 G G C 35 ZCCHC14 23174 broad.mit.edu 36 16 86011726 86011726 + Missense_Mutation SNP T T C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 86011726 86011726 ZCCHC14 16 T T C 58 TP53 7157 broad.mit.edu 36 17 7518902 7518902 + Silent SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 7518902 7518902 TP53 17 C C T 24 ODF4 146852 broad.mit.edu 36 17 8184294 8184294 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8184294 8184294 ODF4 17 C C T 22 CARD14 79092 broad.mit.edu 36 17 75786558 75786558 + Splice_Site_SNP SNP T T G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 75786558 75786558 CARD14 17 T T G 57 NARF 26502 broad.mit.edu 36 17 78032319 78032319 + Nonsense_Mutation SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 78032319 78032319 NARF 17 G G T 41 CCDC94 55702 broad.mit.edu 36 19 4202129 4202129 + Silent SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 4202129 4202129 CCDC94 19 C C T 17 PSG4 5672 broad.mit.edu 36 19 48393988 48393988 + Splice_Site_SNP SNP C C G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 48393988 48393988 PSG4 19 C C G 19 RTN2 6253 broad.mit.edu 36 19 50689411 50689411 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50689411 50689411 RTN2 19 G G C 39 ZNF649 65251 broad.mit.edu 36 19 57085739 57085739 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57085739 57085739 ZNF649 19 C C G 18 MYO7B 4648 broad.mit.edu 36 2 128097353 128097353 + Missense_Mutation SNP A A T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 128097353 128097353 MYO7B 2 A A T 6 ARHGEF4 50649 broad.mit.edu 36 2 131519516 131519516 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 131519516 131519516 ARHGEF4 2 C C T 31 MYO3B 140469 broad.mit.edu 36 2 170952036 170952036 + Nonsense_Mutation SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 170952036 170952036 MYO3B 2 G G T 41 GPR155 151556 broad.mit.edu 36 2 175039537 175039537 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 175039537 175039537 GPR155 2 G G C 36 TTN 7273 broad.mit.edu 36 2 179313133 179313133 + Nonsense_Mutation SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 179313133 179313133 TTN 2 C C A 29 CCDC141 285025 broad.mit.edu 36 2 179441034 179441034 + Silent SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 179441034 179441034 CCDC141 2 G G T 35 WDR75 84128 broad.mit.edu 36 2 190047719 190047719 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 190047719 190047719 WDR75 2 C C G 32 SLC40A1 30061 broad.mit.edu 36 2 190138503 190138503 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 190138503 190138503 SLC40A1 2 C C G 32 ABCA12 26154 broad.mit.edu 36 2 215515967 215515967 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 215515967 215515967 ABCA12 2 G G C 33 C2orf57 165100 broad.mit.edu 36 2 232166123 232166123 + Missense_Mutation SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 232166123 232166123 C2orf57 2 G G T 36 SAG 6295 broad.mit.edu 36 2 233901966 233901966 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 233901966 233901966 SAG 2 C C A 26 RBM44 375316 broad.mit.edu 36 2 238402700 238402700 + Missense_Mutation SNP T T C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 238402700 238402700 RBM44 2 T T C 60 TGM2 7052 broad.mit.edu 36 20 36217890 36217890 + Missense_Mutation SNP T T G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36217890 36217890 TGM2 20 T T G 55 BAGE4 85317 broad.mit.edu 36 21 10120600 10120600 + Silent SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 10120600 10120600 BAGE4 21 G G A 39 ADAMTS1 9510 broad.mit.edu 36 21 27138592 27138592 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27138592 27138592 ADAMTS1 21 G G C 35 TXNRD2 10587 broad.mit.edu 36 22 18286508 18286508 + Silent SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 18286508 18286508 TXNRD2 22 G G A 38 ZNRF3 84133 broad.mit.edu 36 22 27776883 27776883 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27776883 27776883 ZNRF3 22 C C A 24 CSF2RB 1439 broad.mit.edu 36 22 35662613 35662613 + Nonsense_Mutation SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 35662613 35662613 CSF2RB 22 G G A 47 EIF3L 51386 broad.mit.edu 36 22 36596276 36596276 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36596276 36596276 EIF3L 22 C C A 17 MOV10L1 54456 broad.mit.edu 36 22 48872654 48872654 + Silent SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 48872654 48872654 MOV10L1 22 G G T 45 RFTN1 23180 broad.mit.edu 36 3 16333610 16333610 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16333610 16333610 RFTN1 3 C C A 30 DHX30 22907 broad.mit.edu 36 3 47857576 47857577 + Missense_Mutation DNP AG AG CA novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 47857576 47857577 DHX30 3 AG AG CA 11 HYAL3 8372 broad.mit.edu 36 3 50307756 50307756 + Silent SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 50307756 50307756 HYAL3 3 G G T 46 DCBLD2 131566 broad.mit.edu 36 3 100014013 100014013 + Missense_Mutation SNP A A G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100014013 100014013 DCBLD2 3 A A G 4 NIT2 56954 broad.mit.edu 36 3 101554014 101554014 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101554014 101554014 NIT2 3 C C T 17 NFKBIZ 64332 broad.mit.edu 36 3 103057327 103057327 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 103057327 103057327 NFKBIZ 3 G G A 33 ARHGAP31 57514 broad.mit.edu 36 3 120616387 120616387 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120616387 120616387 ARHGAP31 3 G G A 34 LOC389151 389151 broad.mit.edu 36 3 140221999 140221999 + Silent SNP C C G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 140221999 140221999 LOC389151 3 C C G 23 MAN2B2 23324 broad.mit.edu 36 4 6649768 6649768 + Missense_Mutation SNP A A G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6649768 6649768 MAN2B2 4 A A G 14 SPCS3 60559 broad.mit.edu 36 4 177478319 177478319 + Missense_Mutation SNP A A T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 177478319 177478319 SPCS3 4 A A T 1 EGR1 1958 broad.mit.edu 36 5 137831487 137831487 + Missense_Mutation SNP T T G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 137831487 137831487 EGR1 5 T T G 50 PCDHA9 9752 broad.mit.edu 36 5 140209912 140209912 + Missense_Mutation SNP A A T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140209912 140209912 PCDHA9 5 A A T 10 GCM2 9247 broad.mit.edu 36 6 10982436 10982436 + Silent SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 10982436 10982436 GCM2 6 C C T 23 HFE 3077 broad.mit.edu 36 6 26199585 26199585 + Nonsense_Mutation SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 26199585 26199585 HFE 6 C C A 20 GNL1 2794 broad.mit.edu 36 6 30622910 30622910 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30622910 30622910 GNL1 6 G G A 43 C6orf138 442213 broad.mit.edu 36 6 48084503 48084503 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48084503 48084503 C6orf138 6 G G C 35 TCF21 6943 broad.mit.edu 36 6 134252467 134252467 + Missense_Mutation SNP A A C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134252467 134252467 TCF21 6 A A C 7 FOXK1 221937 broad.mit.edu 36 7 4767323 4767323 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4767323 4767323 FOXK1 7 C C G 19 MOGAT3 346606 broad.mit.edu 36 7 100630758 100630758 + Missense_Mutation SNP A A T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100630758 100630758 MOGAT3 7 A A T 9 FAM131B 9715 broad.mit.edu 36 7 142766149 142766149 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 142766149 142766149 FAM131B 7 C C T 22 USP17L2 377630 broad.mit.edu 36 8 12032685 12032685 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12032685 12032685 USP17L2 8 C C T 31 WRN 7486 broad.mit.edu 36 8 31044217 31044217 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31044217 31044217 WRN 8 C C G 20 ADAM18 8749 broad.mit.edu 36 8 39622094 39622094 + Silent SNP T T C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 39622094 39622094 ADAM18 8 T T C 51 TMEM70 54968 broad.mit.edu 36 8 75051189 75051189 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75051189 75051189 TMEM70 8 C C A 30 ANKRD20A2 441430 broad.mit.edu 36 9 42358515 42358515 + Missense_Mutation SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42358515 42358515 ANKRD20A2 9 G G T 33 RABGAP1 23637 broad.mit.edu 36 9 124786734 124786734 + Silent SNP C C G novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 124786734 124786734 RABGAP1 9 C C G 32 ADAMTS13 11093 broad.mit.edu 36 9 135309450 135309450 + Missense_Mutation SNP A A T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135309450 135309450 ADAMTS13 9 A A T 7 BMX 660 broad.mit.edu 36 X 15458069 15458069 + Missense_Mutation SNP A A C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15458069 15458069 BMX 23 A A C 1 FAM48B1 100130302 broad.mit.edu 36 X 24292685 24292685 + Silent SNP T T C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 24292685 24292685 FAM48B1 23 T T C 55 POLA1 5422 broad.mit.edu 36 X 24655819 24655819 + Splice_Site_SNP SNP G G C novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 24655819 24655819 POLA1 23 G G C 33 PAK3 5063 broad.mit.edu 36 X 110277693 110277693 + Nonsense_Mutation SNP C C T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 110277693 110277693 PAK3 23 C C T 17 GPR50 9248 broad.mit.edu 36 X 150099212 150099212 + Missense_Mutation SNP G G T novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150099212 150099212 GPR50 23 G G T 47 DMKN 93099 broad.mit.edu 36 19 40694202 40694252 + In_Frame_Del DEL CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG - CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 40694202 40694252 DMKN 19 CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG - CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG 20 TMEM22 80723 broad.mit.edu 36 3 138056192 138056206 + In_Frame_Del DEL CTTTCTTTGGAACCA - CTTTCTTTGGAACCA novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 138056192 138056206 TMEM22 3 CTTTCTTTGGAACCA - CTTTCTTTGGAACCA 28 GPR20 2843 broad.mit.edu 36 8 142436438 142436439 + Frame_Shift_Del DEL GG - GG novel Unknown TCGA-25-2042-01 TCGA-25-2042-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 142436438 142436439 GPR20 8 GG - GG 35