Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context RAP1GAP 5909 broad.mit.edu 36 1 21809219 21809219 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21809219 21809219 RAP1GAP 1 G G A 35 OR14C36 127066 broad.mit.edu 36 1 246579363 246579363 + Missense_Mutation SNP A A C novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 246579363 246579363 OR14C36 1 A A C 10 NDST2 8509 broad.mit.edu 36 10 75236222 75236222 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75236222 75236222 NDST2 10 G G A 40 FAM45A 404636 broad.mit.edu 36 10 120882025 120882025 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120882025 120882025 FAM45A 10 G G A 42 ERC1 23085 broad.mit.edu 36 12 1351370 1351370 + Missense_Mutation SNP A A G novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1351370 1351370 ERC1 12 A A G 11 PLEKHG6 55200 broad.mit.edu 36 12 6295019 6295019 + Silent SNP G G A novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 6295019 6295019 PLEKHG6 12 G G A 48 CDKN1B 1027 broad.mit.edu 36 12 12762272 12762272 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12762272 12762272 CDKN1B 12 G G A 33 C13orf26 122046 broad.mit.edu 36 13 30438436 30438436 + Nonsense_Mutation SNP C C T novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 30438436 30438436 C13orf26 13 C C T 23 UACA 55075 broad.mit.edu 36 15 68747021 68747021 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 68747021 68747021 UACA 15 C C G 20 EFCAB5 374786 broad.mit.edu 36 17 25441694 25441694 + Silent SNP C C A novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 25441694 25441694 EFCAB5 17 C C A 26 KCNH6 81033 broad.mit.edu 36 17 58976853 58976853 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 58976853 58976853 KCNH6 17 C C T 24 ABCA9 10350 broad.mit.edu 36 17 64539997 64539997 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64539997 64539997 ABCA9 17 C C T 31 PRR19 284338 broad.mit.edu 36 19 47505840 47505840 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47505840 47505840 PRR19 19 G G C 42 HES1 3280 broad.mit.edu 36 3 195338685 195338685 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 195338685 195338685 HES1 3 C C T 27 RICTOR 253260 broad.mit.edu 36 5 38988275 38988275 + Silent SNP T T C novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 38988275 38988275 RICTOR 5 T T C 49 PHF3 23469 broad.mit.edu 36 6 64474071 64474071 + Silent SNP A A T novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 64474071 64474071 PHF3 6 A A T 6 AIM1 202 broad.mit.edu 36 6 107074958 107074958 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2408-01 TCGA-25-2408-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 107074958 107074958 AIM1 6 C C G 22