Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context CTBS 1486 broad.mit.edu 36 1 84808932 84808932 + Silent SNP T T C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 84808932 84808932 CTBS 1 T T C 63 SPTBN2 6712 broad.mit.edu 36 11 66223550 66223550 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 66223550 66223550 SPTBN2 11 G G A 40 CLPB 81570 broad.mit.edu 36 11 71823138 71823138 + Missense_Mutation SNP T T C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71823138 71823138 CLPB 11 T T C 64 PUS1 80324 broad.mit.edu 36 12 130980501 130980501 + Silent SNP C C T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 130980501 130980501 PUS1 12 C C T 27 MYO16 23026 broad.mit.edu 36 13 108270690 108270691 + Missense_Mutation DNP AT AT TA novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 108270690 108270691 MYO16 13 AT AT TA 4 CGRRF1 10668 broad.mit.edu 36 14 54074630 54074630 + Missense_Mutation SNP T T C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54074630 54074630 CGRRF1 14 T T C 54 NDN 4692 broad.mit.edu 36 15 21483337 21483337 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21483337 21483337 NDN 15 G G A 42 VPS13C 54832 broad.mit.edu 36 15 59988545 59988545 + Silent SNP C C T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 59988545 59988545 VPS13C 15 C C T 24 PRC1 9055 broad.mit.edu 36 15 89325231 89325231 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 89325231 89325231 PRC1 15 C C G 29 SYNM 23336 broad.mit.edu 36 15 97490428 97490428 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97490428 97490428 SYNM 15 C C G 19 GSPT1 2935 broad.mit.edu 36 16 11888276 11888276 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11888276 11888276 GSPT1 16 C C T 24 ZNF821 55565 broad.mit.edu 36 16 70451902 70451902 + Silent SNP G G T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 70451902 70451902 ZNF821 16 G G T 47 TRPV3 162514 broad.mit.edu 36 17 3404841 3404841 + Silent SNP G G C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 3404841 3404841 TRPV3 17 G G C 43 MED11 400569 broad.mit.edu 36 17 4581930 4581930 + Missense_Mutation SNP C C A novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4581930 4581930 MED11 17 C C A 29 TP53 7157 broad.mit.edu 36 17 7518293 7518293 + Missense_Mutation SNP C C A novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518293 7518293 TP53 17 C C A 17 ETV4 2118 broad.mit.edu 36 17 38962065 38962065 + Silent SNP C C G novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 38962065 38962065 ETV4 17 C C G 27 CA4 762 broad.mit.edu 36 17 55591421 55591421 + Missense_Mutation SNP A A G novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55591421 55591421 CA4 17 A A G 11 TMC8 147138 broad.mit.edu 36 17 73646067 73646067 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73646067 73646067 TMC8 17 C C T 23 C18orf45 85019 broad.mit.edu 36 18 19132002 19132002 + Silent SNP G G T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 19132002 19132002 C18orf45 18 G G T 35 C18orf34 374864 broad.mit.edu 36 18 29182907 29182907 + Missense_Mutation SNP T T G novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29182907 29182907 C18orf34 18 T T G 56 ZNF91 7644 broad.mit.edu 36 19 23336986 23336986 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23336986 23336986 ZNF91 19 C C T 17 SHKBP1 92799 broad.mit.edu 36 19 45786835 45786835 + Silent SNP C C T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 45786835 45786835 SHKBP1 19 C C T 19 RSPH6A 81492 broad.mit.edu 36 19 51009836 51009837 + Missense_Mutation DNP CC CC AA novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 51009836 51009837 RSPH6A 19 CC CC AA 22 NLRP12 91662 broad.mit.edu 36 19 59004776 59004776 + Missense_Mutation SNP G G C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59004776 59004776 NLRP12 19 G G C 41 LILRA5 353514 broad.mit.edu 36 19 59514739 59514739 + Missense_Mutation SNP T T C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59514739 59514739 LILRA5 19 T T C 62 MAP4K3 8491 broad.mit.edu 36 2 39517539 39517539 + Missense_Mutation SNP T T C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39517539 39517539 MAP4K3 2 T T C 63 TTL 150465 broad.mit.edu 36 2 112968226 112968226 + Missense_Mutation SNP G G T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 112968226 112968226 TTL 2 G G T 46 SCN3A 6328 broad.mit.edu 36 2 165711590 165711590 + Missense_Mutation SNP A A G novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 165711590 165711590 SCN3A 2 A A G 12 C2orf66 401027 broad.mit.edu 36 2 197380523 197380523 + Silent SNP G G A novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 197380523 197380523 C2orf66 2 G G A 41 SNED1 25992 broad.mit.edu 36 2 241670404 241670404 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 241670404 241670404 SNED1 2 C C T 30 SLC4A11 83959 broad.mit.edu 36 20 3158863 3158863 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3158863 3158863 SLC4A11 20 C C G 17 PROKR2 128674 broad.mit.edu 36 20 5230783 5230783 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5230783 5230783 PROKR2 20 C C T 19 MYH7B 57644 broad.mit.edu 36 20 33050327 33050327 + Missense_Mutation SNP A A C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33050327 33050327 MYH7B 20 A A C 11 TRPM2 7226 broad.mit.edu 36 21 44635613 44635613 + Missense_Mutation SNP G G T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44635613 44635613 TRPM2 21 G G T 46 ALDH1L1 10840 broad.mit.edu 36 3 127355060 127355060 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 127355060 127355060 ALDH1L1 3 C C G 32 NPHP3 27031 broad.mit.edu 36 3 133903036 133903036 + Missense_Mutation SNP G G C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 133903036 133903036 NPHP3 3 G G C 46 ABCC5 10057 broad.mit.edu 36 3 185121873 185121873 + Missense_Mutation SNP A A T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 185121873 185121873 ABCC5 3 A A T 1 FGFR3 2261 broad.mit.edu 36 4 1777374 1777374 + Missense_Mutation SNP G G T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1777374 1777374 FGFR3 4 G G T 46 CCDC158 339965 broad.mit.edu 36 4 77497599 77497599 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77497599 77497599 CCDC158 4 C C G 32 C4orf21 55345 broad.mit.edu 36 4 113758564 113758564 + Missense_Mutation SNP G G C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113758564 113758564 C4orf21 4 G G C 45 ADCY2 108 broad.mit.edu 36 5 7879918 7879918 + Silent SNP C C T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 7879918 7879918 ADCY2 5 C C T 18 CTNND2 1501 broad.mit.edu 36 5 11289923 11289923 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11289923 11289923 CTNND2 5 C C G 30 FBN2 2201 broad.mit.edu 36 5 127738326 127738326 + Silent SNP C C T novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 127738326 127738326 FBN2 5 C C T 32 CTNNA1 1495 broad.mit.edu 36 5 138145513 138145513 + Missense_Mutation SNP A A C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 138145513 138145513 CTNNA1 5 A A C 4 HIST1H2BJ 8970 broad.mit.edu 36 6 27208431 27208431 + Silent SNP G G A novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 27208431 27208431 HIST1H2BJ 6 G G A 40 ABCC10 89845 broad.mit.edu 36 6 43514388 43514388 + Silent SNP G G A novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 43514388 43514388 ABCC10 6 G G A 47 EPDR1 54749 broad.mit.edu 36 7 37926943 37926943 + Silent SNP A A C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 37926943 37926943 EPDR1 7 A A C 6 NPC1L1 29881 broad.mit.edu 36 7 44519640 44519640 + Missense_Mutation SNP G G C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44519640 44519640 NPC1L1 7 G G C 34 ELN 2006 broad.mit.edu 36 7 73093497 73093497 + Missense_Mutation SNP C C A rs41350445 Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73093497 73093497 ELN 7 C C A 27 DGKI 9162 broad.mit.edu 36 7 136922464 136922464 + Silent SNP C C A novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 136922464 136922464 DGKI 7 C C A 25 TRPS1 7227 broad.mit.edu 36 8 116701055 116701055 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116701055 116701055 TRPS1 8 G G A 43 BAI1 575 broad.mit.edu 36 8 143566730 143566730 + Missense_Mutation SNP T T C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 143566730 143566730 BAI1 8 T T C 54 USP51 158880 broad.mit.edu 36 X 55531044 55531044 + Missense_Mutation SNP T T C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55531044 55531044 USP51 23 T T C 54 UTP14A 10813 broad.mit.edu 36 X 128891264 128891264 + Nonstop_Mutation SNP G G C novel Unknown TCGA-31-1959-01 TCGA-31-1959-10 Unknown Unknown Unknown x x --- x Broad Nonstop_Mutation SNP 128891264 128891264 UTP14A 23 G G C 45