Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
BPI	671	hgsc.bcm.edu	36	20	36369480	36369480	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	36369480	36369480	BPI	20	G	G	A	42
BTBD12	84464	hgsc.bcm.edu	36	16	3592172	3592172	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	3592172	3592172	BTBD12	16	G	G	A	45
CLCN7	1186	hgsc.bcm.edu	36	16	1455272	1455272	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	1455272	1455272	CLCN7	16	G	G	A	44
CYTH2	9266	hgsc.bcm.edu	36	19	53669277	53669277	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53669277	53669277	CYTH2	19	G	G	A	40
DNMT3B	1789	hgsc.bcm.edu	36	20	30846958	30846958	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30846958	30846958	DNMT3B	20	C	C	G	28
LRRK2	120892	hgsc.bcm.edu	36	12	38985901	38985901	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	38985901	38985901	LRRK2	12	C	C	G	29
MKRN3	7681	hgsc.bcm.edu	36	15	21362280	21362280	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	21362280	21362280	MKRN3	15	G	G	A	40
NXT2	55916	hgsc.bcm.edu	36	X	108671416	108671416	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	108671416	108671416	NXT2	23	T	T	C	64
PYGO1	26108	hgsc.bcm.edu	36	15	53628417	53628417	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53628417	53628417	PYGO1	15	G	G	A	38
SMARCB1	6598	hgsc.bcm.edu	36	22	22505888	22505888	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	22505888	22505888	SMARCB1	22	G	G	A	37
STAC3	246329	hgsc.bcm.edu	36	12	55929311	55929311	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55929311	55929311	STAC3	12	C	C	A	24
TMEM182	130827	hgsc.bcm.edu	36	2	102780791	102780791	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	102780791	102780791	TMEM182	2	G	G	A	43
TP53	7157	hgsc.bcm.edu	36	17	7514743	7514743	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7514743	7514743	TP53	17	G	G	A	38
TRAF5	7188	hgsc.bcm.edu	36	1	209599931	209599931	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	209599931	209599931	TRAF5	1	C	C	G	23
UBQLN3	50613	hgsc.bcm.edu	36	11	5485474	5485474	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5485474	5485474	UBQLN3	11	G	G	C	37
USP11	8237	hgsc.bcm.edu	36	X	46983436	46983436	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1571-01	TCGA-36-1571-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46983436	46983436	USP11	23	A	A	G	16