Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACOX1	51	hgsc.bcm.edu	36	17	71457037	71457037	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	71457037	71457037	ACOX1	17	C	C	G	24
AGTR2	186	hgsc.bcm.edu	36	X	115218213	115218213	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	115218213	115218213	AGTR2	23	C	C	A	24
C2orf44	80304	hgsc.bcm.edu	36	2	24115310	24115310	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24115310	24115310	C2orf44	2	C	C	T	27
ZFP91-CNTF	1270	hgsc.bcm.edu	36	11	58148441	58148441	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	58148441	58148441	ZFP91-CNTF	11	G	G	A	42
DSCAML1	57453	hgsc.bcm.edu	36	11	116826480	116826480	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	116826480	116826480	DSCAML1	11	G	G	-	47
ETV3L	440695	hgsc.bcm.edu	36	1	155329520	155329520	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	155329520	155329520	ETV3L	1	A	A	G	7
NLRP4	147945	hgsc.bcm.edu	36	19	61061256	61061256	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	61061256	61061256	NLRP4	19	G	G	A	40
PARD3	56288	hgsc.bcm.edu	36	10	34706947	34706947	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	34706947	34706947	PARD3	10	G	G	C	38
PGAP2	27315	hgsc.bcm.edu	36	11	3803214	3803214	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	3803214	3803214	PGAP2	11	G	G	T	39
PIK3C2B	5287	hgsc.bcm.edu	36	1	202669116	202669116	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	202669116	202669116	PIK3C2B	1	C	C	T	25
PROKR2	128674	hgsc.bcm.edu	36	20	5242732	5242732	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5242732	5242732	PROKR2	20	A	A	G	7
TBX5	6910	hgsc.bcm.edu	36	12	113324089	113324089	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	113324089	113324089	TBX5	12	A	A	G	6
TEP1	7011	hgsc.bcm.edu	36	14	19934728	19934728	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	19934728	19934728	TEP1	14	T	T	G	64
TMEM130	222865	hgsc.bcm.edu	36	7	98284141	98284141	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	98284141	98284141	TMEM130	7	C	C	A	18
TMPRSS3	64699	hgsc.bcm.edu	36	21	42676377	42676377	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	42676377	42676377	TMPRSS3	21	C	C	A	28
TP53	7157	hgsc.bcm.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7517846	7517846	TP53	17	G	G	A	38
TTC3	7267	hgsc.bcm.edu	36	21	37446113	37446113	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	37446113	37446113	TTC3	21	A	A	-	5
UGT3A2	167127	hgsc.bcm.edu	36	5	36071585	36071585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36071585	36071585	UGT3A2	5	C	C	T	19
WDR53	348793	hgsc.bcm.edu	36	3	197766020	197766020	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1580-01	TCGA-36-1580-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	197766020	197766020	WDR53	3	T	T	C	54