Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context HIVEP3 59269 broad.mit.edu 36 1 41822050 41822050 + Nonsense_Mutation SNP C C A novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 41822050 41822050 HIVEP3 1 C C A 31 CCAR1 55749 broad.mit.edu 36 10 70185224 70185224 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70185224 70185224 CCAR1 10 C C A 22 PYGM 5837 broad.mit.edu 36 11 64277171 64277171 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64277171 64277171 PYGM 11 G G A 37 CPT1A 1374 broad.mit.edu 36 11 68309007 68309007 + Nonsense_Mutation SNP G G A novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 68309007 68309007 CPT1A 11 G G A 37 ATN1 1822 broad.mit.edu 36 12 6915115 6915115 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6915115 6915115 ATN1 12 G G A 41 KL 9365 broad.mit.edu 36 13 32533040 32533040 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32533040 32533040 KL 13 G G C 36 UGGT2 55757 broad.mit.edu 36 13 95334927 95334927 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95334927 95334927 UGGT2 13 C C T 19 PIGH 5283 broad.mit.edu 36 14 67130374 67130374 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67130374 67130374 PIGH 14 G G A 34 ZFYVE26 23503 broad.mit.edu 36 14 67344228 67344228 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67344228 67344228 ZFYVE26 14 G G C 34 EIF2B2 8892 broad.mit.edu 36 14 74545605 74545605 + Silent SNP G G A novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 74545605 74545605 EIF2B2 14 G G A 45 SCNN1G 6340 broad.mit.edu 36 16 23116230 23116230 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23116230 23116230 SCNN1G 16 C C A 18 MAZ 4150 broad.mit.edu 36 16 29728362 29728362 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29728362 29728362 MAZ 16 G G C 42 TP53 7157 broad.mit.edu 36 17 7517577 7517577 + Splice_Site_SNP SNP C C A rs11575997 Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 7517577 7517577 TP53 17 C C A 18 RDM1 201299 broad.mit.edu 36 17 31275861 31275861 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31275861 31275861 RDM1 17 C C A 24 LMNB2 84823 broad.mit.edu 36 19 2383480 2383480 + Silent SNP C C T novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 2383480 2383480 LMNB2 19 C C T 21 CALR 811 broad.mit.edu 36 19 12912239 12912239 + Silent SNP C C T novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 12912239 12912239 CALR 19 C C T 31 LILRA6 79168 broad.mit.edu 36 19 59436170 59436170 + Nonsense_Mutation SNP A A C rs1052992 Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 59436170 59436170 LILRA6 19 A A C 4 EIF2AK2 5610 broad.mit.edu 36 2 37195473 37195473 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37195473 37195473 EIF2AK2 2 C C T 20 VARS2 57176 broad.mit.edu 36 6 30998902 30998902 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30998902 30998902 VARS2 6 G G A 37 RIMS1 22999 broad.mit.edu 36 6 73100052 73100052 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73100052 73100052 RIMS1 6 C C T 19 EPDR1 54749 broad.mit.edu 36 7 37926825 37926826 + Missense_Mutation DNP CA CA AT novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 37926825 37926826 EPDR1 7 CA CA AT 21 CSMD3 114788 broad.mit.edu 36 8 113383345 113383345 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113383345 113383345 CSMD3 8 G G T 44 TSNARE1 203062 broad.mit.edu 36 8 143423241 143423241 + Silent SNP C C T novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 143423241 143423241 TSNARE1 8 C C T 27 CYP11B1 1584 broad.mit.edu 36 8 143953509 143953509 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 143953509 143953509 CYP11B1 8 G G C 38 KDM4C 23081 broad.mit.edu 36 9 7159927 7159927 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7159927 7159927 KDM4C 9 G G C 36 ARHGEF9 23229 broad.mit.edu 36 X 62815099 62815099 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62815099 62815099 ARHGEF9 23 C C T 30 MED15 51586 broad.mit.edu 36 22 19250813 19250814 + In_Frame_Ins INS - CAG - novel Unknown TCGA-59-2355-01 TCGA-59-2355-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Ins INS 19250813 19250814 MED15 22 - CAG - 2