Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context ACTRT2 140625 broad.mit.edu 36 1 2928909 2928909 + Missense_Mutation SNP C C G novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2928909 2928909 ACTRT2 1 C C G 21 KIAA0495 57212 broad.mit.edu 36 1 3652604 3652604 + Silent SNP G G A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 3652604 3652604 KIAA0495 1 G G A 39 CLCNKB 1188 broad.mit.edu 36 1 16251279 16251279 + Splice_Site_SNP SNP G G A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 16251279 16251279 CLCNKB 1 G G A 35 AGBL4 84871 broad.mit.edu 36 1 49283865 49283865 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49283865 49283865 AGBL4 1 C C T 23 ZYG11B 79699 broad.mit.edu 36 1 53040373 53040373 + Missense_Mutation SNP A A T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53040373 53040373 ZYG11B 1 A A T 8 INADL 10207 broad.mit.edu 36 1 62001353 62001353 + Silent SNP T T C novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 62001353 62001353 INADL 1 T T C 60 UAP1 6675 broad.mit.edu 36 1 160813371 160813371 + Missense_Mutation SNP A A G novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 160813371 160813371 UAP1 1 A A G 16 CFHR3 10878 broad.mit.edu 36 1 195025979 195025979 + Silent SNP A A T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 195025979 195025979 CFHR3 1 A A T 14 NEURL 9148 broad.mit.edu 36 10 105334913 105334913 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105334913 105334913 NEURL 10 C C T 31 PDCD4 27250 broad.mit.edu 36 10 112631165 112631165 + Silent SNP G G T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 112631165 112631165 PDCD4 10 G G T 39 OR51T1 401665 broad.mit.edu 36 11 4860131 4860131 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4860131 4860131 OR51T1 11 G G A 47 KIF18A 81930 broad.mit.edu 36 11 28013557 28013557 + Silent SNP G G A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 28013557 28013557 KIF18A 11 G G A 35 NADSYN1 55191 broad.mit.edu 36 11 70879624 70879624 + Missense_Mutation SNP T T A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70879624 70879624 NADSYN1 11 T T A 56 ACSM4 341392 broad.mit.edu 36 12 7348377 7348377 + Silent SNP G G A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 7348377 7348377 ACSM4 12 G G A 36 SOX5 6660 broad.mit.edu 36 12 23607544 23607544 + Missense_Mutation SNP T T G novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23607544 23607544 SOX5 12 T T G 54 AMDHD1 144193 broad.mit.edu 36 12 94878332 94878332 + Missense_Mutation SNP G G T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94878332 94878332 AMDHD1 12 G G T 45 TBX3 6926 broad.mit.edu 36 12 113598654 113598654 + Missense_Mutation SNP G G C novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113598654 113598654 TBX3 12 G G C 48 COL4A1 1282 broad.mit.edu 36 13 109629692 109629692 + Missense_Mutation SNP C C G novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109629692 109629692 COL4A1 13 C C G 24 FLJ10357 55701 broad.mit.edu 36 14 20616962 20616962 + Missense_Mutation SNP C C A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20616962 20616962 FLJ10357 14 C C A 25 SLC25A29 123096 broad.mit.edu 36 14 99829383 99829383 + Splice_Site_SNP SNP C C A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 99829383 99829383 SLC25A29 14 C C A 19 HERC2 8924 broad.mit.edu 36 15 26081966 26081966 + Missense_Mutation SNP T T A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26081966 26081966 HERC2 15 T T A 55 CASC4 113201 broad.mit.edu 36 15 42460296 42460296 + Missense_Mutation SNP A A G novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42460296 42460296 CASC4 15 A A G 12 FAHD1 81889 broad.mit.edu 36 16 1817887 1817888 + Missense_Mutation DNP TG TG CT novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 1817887 1817888 FAHD1 16 TG TG CT 59 PDP2 57546 broad.mit.edu 36 16 65476657 65476657 + Silent SNP G G A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 65476657 65476657 PDP2 16 G G A 34 TP53 7157 broad.mit.edu 36 17 7518273 7518273 + Missense_Mutation SNP C C G rs28934575 Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518273 7518273 TP53 17 C C G 23 KRT24 192666 broad.mit.edu 36 17 36111046 36111046 + Missense_Mutation SNP T T C novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36111046 36111046 KRT24 17 T T C 54 HEATR6 63897 broad.mit.edu 36 17 55475917 55475917 + Nonsense_Mutation SNP G G C novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 55475917 55475917 HEATR6 17 G G C 45 SLC39A11 201266 broad.mit.edu 36 17 68156995 68156995 + Missense_Mutation SNP C C G novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 68156995 68156995 SLC39A11 17 C C G 26 ATP8B1 5205 broad.mit.edu 36 18 53479435 53479435 + Silent SNP T T C novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 53479435 53479435 ATP8B1 18 T T C 54 ZNF407 55628 broad.mit.edu 36 18 70904166 70904166 + Missense_Mutation SNP T T A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70904166 70904166 ZNF407 18 T T A 62 ZNF236 7776 broad.mit.edu 36 18 72801720 72801720 + Nonsense_Mutation SNP C C A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 72801720 72801720 ZNF236 18 C C A 17 ARID3A 1820 broad.mit.edu 36 19 919497 919497 + Missense_Mutation SNP T T G novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 919497 919497 ARID3A 19 T T G 57 FCGBP 8857 broad.mit.edu 36 19 45090281 45090282 + Missense_Mutation DNP CG CG AT novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 45090281 45090282 FCGBP 19 CG CG AT 31 MOV10L1 54456 broad.mit.edu 36 22 48897863 48897863 + Silent SNP G G A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 48897863 48897863 MOV10L1 22 G G A 40 PCDHA3 56145 broad.mit.edu 36 5 140162814 140162814 + Silent SNP C C T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 140162814 140162814 PCDHA3 5 C C T 27 PCDHB7 56129 broad.mit.edu 36 5 140533226 140533226 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140533226 140533226 PCDHB7 5 G G A 36 NOD1 10392 broad.mit.edu 36 7 30457825 30457825 + Missense_Mutation SNP A A G novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30457825 30457825 NOD1 7 A A G 11 CREB3L2 64764 broad.mit.edu 36 7 137220324 137220324 + Silent SNP C C T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 137220324 137220324 CREB3L2 7 C C T 25 MMP16 4325 broad.mit.edu 36 8 89122930 89122930 + Missense_Mutation SNP T T C novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 89122930 89122930 MMP16 8 T T C 49 SLC6A14 11254 broad.mit.edu 36 X 115496779 115496779 + Missense_Mutation SNP G G T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 115496779 115496779 SLC6A14 23 G G T 40 ODZ1 10178 broad.mit.edu 36 X 123615119 123615119 + Missense_Mutation SNP G G T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123615119 123615119 ODZ1 23 G G T 36 PRAMEF19 645414 broad.mit.edu 36 1 13347702 13347712 + Frame_Shift_Del DEL CTCAAGACGGA - CTCAAGACGGA novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 13347702 13347712 PRAMEF19 1 CTCAAGACGGA - CTCAAGACGGA 28 SSTR1 6751 broad.mit.edu 36 14 37749231 37749231 + Frame_Shift_Del DEL T - T novel Unknown TCGA-61-1736-01 TCGA-61-1736-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 37749231 37749231 SSTR1 14 T - T 60