Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context MACF1 23499 broad.mit.edu 36 1 39672880 39672880 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39672880 39672880 MACF1 1 G G C 33 ADAR 103 broad.mit.edu 36 1 152829018 152829018 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152829018 152829018 ADAR 1 G G A 36 OR5P2 120065 broad.mit.edu 36 11 7774747 7774747 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7774747 7774747 OR5P2 11 C C T 31 DYRK2 8445 broad.mit.edu 36 12 66337947 66337947 + Silent SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 66337947 66337947 DYRK2 12 G G A 37 RASAL1 8437 broad.mit.edu 36 12 112053104 112053104 + Silent SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 112053104 112053104 RASAL1 12 G G A 35 PXN 5829 broad.mit.edu 36 12 119137799 119137799 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 119137799 119137799 PXN 12 C C T 23 DYNC1H1 1778 broad.mit.edu 36 14 101515924 101515924 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101515924 101515924 DYNC1H1 14 A A G 4 TRPM1 4308 broad.mit.edu 36 15 29105687 29105687 + Silent SNP C C T novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 29105687 29105687 TRPM1 15 C C T 24 GDE1 51573 broad.mit.edu 36 16 19440544 19440544 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19440544 19440544 GDE1 16 G G C 34 TP53 7157 broad.mit.edu 36 17 7518951 7518951 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518951 7518951 TP53 17 T T A 58 MIF4GD 57409 broad.mit.edu 36 17 70775508 70775508 + Nonsense_Mutation SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 70775508 70775508 MIF4GD 17 G G A 47 ZFP161 7541 broad.mit.edu 36 18 5281171 5281171 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5281171 5281171 ZFP161 18 G G A 43 ANKRD29 147463 broad.mit.edu 36 18 19483072 19483072 + Silent SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 19483072 19483072 ANKRD29 18 G G A 42 MOCOS 55034 broad.mit.edu 36 18 32037134 32037134 + Silent SNP C C T novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 32037134 32037134 MOCOS 18 C C T 22 ZNF441 126068 broad.mit.edu 36 19 11753139 11753139 + Silent SNP T T C novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 11753139 11753139 ZNF441 19 T T C 51 ZNF30 90075 broad.mit.edu 36 19 40127079 40127079 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40127079 40127079 ZNF30 19 G G A 45 EGLN2 112398 broad.mit.edu 36 19 46004333 46004333 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46004333 46004333 EGLN2 19 G G A 39 GLTSCR2 29997 broad.mit.edu 36 19 52940675 52940675 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52940675 52940675 GLTSCR2 19 G G C 34 LILRB5 10990 broad.mit.edu 36 19 59448664 59448664 + Splice_Site_SNP SNP T T C novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 59448664 59448664 LILRB5 19 T T C 56 DLEC1 9940 broad.mit.edu 36 3 38114099 38114099 + Silent SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 38114099 38114099 DLEC1 3 G G A 38 MST1R 4486 broad.mit.edu 36 3 49914844 49914844 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49914844 49914844 MST1R 3 G G T 41 PI4K2B 55300 broad.mit.edu 36 4 24867331 24867331 + Silent SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 24867331 24867331 PI4K2B 4 G G A 36 PCDHB16 57717 broad.mit.edu 36 5 140542463 140542463 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140542463 140542463 PCDHB16 5 G G C 35 PCDHGA11 56105 broad.mit.edu 36 5 140781782 140781782 + Silent SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 140781782 140781782 PCDHGA11 5 G G A 39 EBF1 1879 broad.mit.edu 36 5 158456626 158456626 + Silent SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 158456626 158456626 EBF1 5 G G A 40 MUT 4594 broad.mit.edu 36 6 49535127 49535127 + Silent SNP A A G novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 49535127 49535127 MUT 6 A A G 15 GPNMB 10457 broad.mit.edu 36 7 23263167 23263167 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23263167 23263167 GPNMB 7 G G A 39 PCLO 27445 broad.mit.edu 36 7 82419794 82419794 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82419794 82419794 PCLO 7 G G A 46 ZSCAN21 7589 broad.mit.edu 36 7 99492938 99492938 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99492938 99492938 ZSCAN21 7 C C T 27 CRB2 286204 broad.mit.edu 36 9 125172861 125172861 + Nonsense_Mutation SNP C C T novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 125172861 125172861 CRB2 9 C C T 21 RPGR 6103 broad.mit.edu 36 X 38067608 38067608 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38067608 38067608 RPGR 23 C C A 25 CXCR3 2833 broad.mit.edu 36 X 70753547 70753547 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70753547 70753547 CXCR3 23 C C T 27 RHOXF1 158800 broad.mit.edu 36 X 119133481 119133481 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 119133481 119133481 RHOXF1 23 C C T 27 MAGEA11 4110 broad.mit.edu 36 X 148576946 148576946 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2092-01 TCGA-61-2092-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 148576946 148576946 MAGEA11 23 C C A 29