Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context KIAA1751 85452 broad.mit.edu 36 1 1887722 1887722 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1887722 1887722 KIAA1751 1 A A G 13 PRDM16 63976 broad.mit.edu 36 1 3318830 3318830 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3318830 3318830 PRDM16 1 C C G 24 GRIK3 2899 broad.mit.edu 36 1 37129210 37129211 + Missense_Mutation DNP CA CA AG novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 37129210 37129211 GRIK3 1 CA CA AG 25 MACF1 23499 broad.mit.edu 36 1 39689404 39689404 + Silent SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 39689404 39689404 MACF1 1 G G A 34 CCDC17 149483 broad.mit.edu 36 1 45861055 45861055 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45861055 45861055 CCDC17 1 G G T 33 BSND 7809 broad.mit.edu 36 1 55246503 55246503 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55246503 55246503 BSND 1 C C T 22 CLCA1 1179 broad.mit.edu 36 1 86731793 86731793 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 86731793 86731793 CLCA1 1 A A T 7 CSDE1 7812 broad.mit.edu 36 1 115064767 115064767 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 115064767 115064767 CSDE1 1 C C A 17 CD48 962 broad.mit.edu 36 1 158948106 158948106 + Silent SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 158948106 158948106 CD48 1 G G A 47 SH3BP5L 80851 broad.mit.edu 36 1 247072914 247072914 + Silent SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 247072914 247072914 SH3BP5L 1 G G A 39 WAPAL 23063 broad.mit.edu 36 10 88249462 88249462 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88249462 88249462 WAPAL 10 G G T 48 CCDC73 493860 broad.mit.edu 36 11 32592523 32592523 + Silent SNP A A C novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 32592523 32592523 CCDC73 11 A A C 7 SLCO2B1 11309 broad.mit.edu 36 11 74593133 74593133 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74593133 74593133 SLCO2B1 11 A A T 12 NCAM1 4684 broad.mit.edu 36 11 112609226 112609226 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 112609226 112609226 NCAM1 11 C C T 30 ZBTB16 7704 broad.mit.edu 36 11 113440093 113440093 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113440093 113440093 ZBTB16 11 C C G 27 LRP6 4040 broad.mit.edu 36 12 12169545 12169545 + Silent SNP T T A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 12169545 12169545 LRP6 12 T T A 54 ENDOU 8909 broad.mit.edu 36 12 46390931 46390931 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46390931 46390931 ENDOU 12 C C T 23 DPY19L2 283417 broad.mit.edu 36 12 62348317 62348317 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62348317 62348317 DPY19L2 12 G G C 35 MYBPC1 4604 broad.mit.edu 36 12 100598365 100598365 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100598365 100598365 MYBPC1 12 T T G 51 AHNAK2 113146 broad.mit.edu 36 14 104480969 104480969 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104480969 104480969 AHNAK2 14 G G A 41 MAP1A 4130 broad.mit.edu 36 15 41604119 41604119 + Silent SNP G G T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 41604119 41604119 MAP1A 15 G G T 42 SIN3A 25942 broad.mit.edu 36 15 73480188 73480188 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73480188 73480188 SIN3A 15 T T C 49 ZNF423 23090 broad.mit.edu 36 16 48229945 48229945 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48229945 48229945 ZNF423 16 C C A 31 MYBBP1A 10514 broad.mit.edu 36 17 4402653 4402653 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4402653 4402653 MYBBP1A 17 C C A 25 TP53 7157 broad.mit.edu 36 17 7519267 7519267 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7519267 7519267 TP53 17 G G C 35 NF1 4763 broad.mit.edu 36 17 26580262 26580262 + Nonsense_Mutation SNP C C T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 26580262 26580262 NF1 17 C C T 17 AATF 26574 broad.mit.edu 36 17 32488042 32488042 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32488042 32488042 AATF 17 C C G 21 CNTNAP1 8506 broad.mit.edu 36 17 38093414 38093414 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38093414 38093414 CNTNAP1 17 C C G 24 CDH7 1005 broad.mit.edu 36 18 61677924 61677924 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61677924 61677924 CDH7 18 G G T 44 SAFB 6294 broad.mit.edu 36 19 5619291 5619291 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5619291 5619291 SAFB 19 C C G 31 OR7E24 26648 broad.mit.edu 36 19 9222964 9222964 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 9222964 9222964 OR7E24 19 C C T 30 PXDN 7837 broad.mit.edu 36 2 1670473 1670473 + Silent SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 1670473 1670473 PXDN 2 G G A 48 ACVR1C 130399 broad.mit.edu 36 2 158107611 158107612 + Missense_Mutation DNP GC GC AA novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 158107611 158107612 ACVR1C 2 GC GC AA 34 TTN 7273 broad.mit.edu 36 2 179141455 179141455 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 179141455 179141455 TTN 2 C C T 31 CERKL 375298 broad.mit.edu 36 2 182112074 182112074 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 182112074 182112074 CERKL 2 C C T 18 CLK1 1195 broad.mit.edu 36 2 201430821 201430821 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 201430821 201430821 CLK1 2 G G T 46 INO80D 54891 broad.mit.edu 36 2 206577799 206577799 + Silent SNP G G T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 206577799 206577799 INO80D 2 G G T 43 VIL1 7429 broad.mit.edu 36 2 219002836 219002836 + Silent SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 219002836 219002836 VIL1 2 G G A 35 BPIL1 80341 broad.mit.edu 36 20 31072044 31072044 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31072044 31072044 BPIL1 20 G G A 42 TTPAL 79183 broad.mit.edu 36 20 42542284 42542284 + Silent SNP C C T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 42542284 42542284 TTPAL 20 C C T 19 FBLN2 2199 broad.mit.edu 36 3 13653070 13653070 + Splice_Site_SNP SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 13653070 13653070 FBLN2 3 G G A 40 C3orf20 84077 broad.mit.edu 36 3 14773895 14773895 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14773895 14773895 C3orf20 3 G G A 37 ZNF167 55888 broad.mit.edu 36 3 44586966 44586966 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44586966 44586966 ZNF167 3 C C G 32 ROBO2 6092 broad.mit.edu 36 3 77682761 77682761 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77682761 77682761 ROBO2 3 T T A 61 COL6A6 131873 broad.mit.edu 36 3 131776047 131776047 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 131776047 131776047 COL6A6 3 G G C 34 TACC3 10460 broad.mit.edu 36 4 1700162 1700162 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1700162 1700162 TACC3 4 A A G 10 MYLIP 29116 broad.mit.edu 36 6 16251255 16251255 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16251255 16251255 MYLIP 6 G G A 41 TINAG 27283 broad.mit.edu 36 6 54281422 54281422 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54281422 54281422 TINAG 6 C C G 29 ROS1 6098 broad.mit.edu 36 6 117814749 117814749 + Silent SNP C C A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 117814749 117814749 ROS1 6 C C A 17 RAET1L 154064 broad.mit.edu 36 6 150384998 150384998 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150384998 150384998 RAET1L 6 C C T 24 AUTS2 26053 broad.mit.edu 36 7 69893124 69893124 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69893124 69893124 AUTS2 7 G G A 42 TEX15 56154 broad.mit.edu 36 8 30820551 30820551 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30820551 30820551 TEX15 8 G G C 33 TM7SF4 81501 broad.mit.edu 36 8 105430719 105430719 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105430719 105430719 TM7SF4 8 G G C 45 ANGPT1 284 broad.mit.edu 36 8 108417619 108417619 + Silent SNP G G T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 108417619 108417619 ANGPT1 8 G G T 35 FAM135B 51059 broad.mit.edu 36 8 139214186 139214186 + Silent SNP G G T novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 139214186 139214186 FAM135B 8 G G T 42 IFNW1 3467 broad.mit.edu 36 9 21131017 21131017 + Silent SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 21131017 21131017 IFNW1 9 G G A 36 FAM47C 442444 broad.mit.edu 36 X 36938588 36938588 + Silent SNP G G A novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 36938588 36938588 FAM47C 23 G G A 39 CAPN6 827 broad.mit.edu 36 X 110393712 110393712 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 110393712 110393712 CAPN6 23 C C G 29 DMKN 93099 broad.mit.edu 36 19 40694202 40694252 + In_Frame_Del DEL CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG - CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG novel Unknown TCGA-61-2094-01 TCGA-61-2094-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 40694202 40694252 DMKN 19 CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG - CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG 20