Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context VPS13D 55187 broad.mit.edu 36 1 12397828 12397828 + Silent SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 12397828 12397828 VPS13D 1 C C T 29 ATP13A2 23400 broad.mit.edu 36 1 17199516 17199517 + Missense_Mutation DNP AT AT GA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 17199516 17199517 ATP13A2 1 AT AT GA 12 GRHL3 57822 broad.mit.edu 36 1 24536807 24536807 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24536807 24536807 GRHL3 1 G G A 40 RLF 6018 broad.mit.edu 36 1 40477621 40477621 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40477621 40477621 RLF 1 C C A 29 SCP2 6342 broad.mit.edu 36 1 53226381 53226381 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53226381 53226381 SCP2 1 C C T 22 PCSK9 255738 broad.mit.edu 36 1 55299722 55299723 + Missense_Mutation DNP GG GG AA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 55299722 55299723 PCSK9 1 GG GG AA 43 ALG14 199857 broad.mit.edu 36 1 95265285 95265285 + Silent SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 95265285 95265285 ALG14 1 C C T 29 NRAS 4893 broad.mit.edu 36 1 115058052 115058052 + Missense_Mutation SNP T T C rs11554290 byHapMap TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 115058052 115058052 NRAS 1 T T C 63 NOTCH2 4853 broad.mit.edu 36 1 120260212 120260212 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120260212 120260212 NOTCH2 1 G G A 43 RFX5 5993 broad.mit.edu 36 1 149581391 149581391 + Silent SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 149581391 149581391 RFX5 1 C C T 24 ATP8B2 57198 broad.mit.edu 36 1 152569979 152569980 + Missense_Mutation DNP AG AG GC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 152569979 152569980 ATP8B2 1 AG AG GC 7 GBA 2629 broad.mit.edu 36 1 153475004 153475004 + Nonsense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 153475004 153475004 GBA 1 G G T 48 TNN 63923 broad.mit.edu 36 1 173321172 173321173 + Missense_Mutation DNP CC CC AG novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 173321172 173321173 TNN 1 CC CC AG 22 SOX13 9580 broad.mit.edu 36 1 202350167 202350167 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 202350167 202350167 SOX13 1 C C G 18 MCM10 55388 broad.mit.edu 36 10 13268189 13268189 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13268189 13268189 MCM10 10 A A T 8 MYST4 23522 broad.mit.edu 36 10 76460652 76460652 + Nonsense_Mutation SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 76460652 76460652 MYST4 10 C C T 25 ANKRD2 26287 broad.mit.edu 36 10 99333386 99333386 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99333386 99333386 ANKRD2 10 C C A 25 KAZALD1 81621 broad.mit.edu 36 10 102812655 102812655 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102812655 102812655 KAZALD1 10 C C G 28 JAKMIP3 282973 broad.mit.edu 36 10 133817298 133817298 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 133817298 133817298 JAKMIP3 10 A A G 12 SLC22A18 5002 broad.mit.edu 36 11 2902983 2902983 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2902983 2902983 SLC22A18 11 A A T 11 RRP8 23378 broad.mit.edu 36 11 6581246 6581246 + Silent SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 6581246 6581246 RRP8 11 G G T 33 GAL3ST3 89792 broad.mit.edu 36 11 65567636 65567636 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65567636 65567636 GAL3ST3 11 G G A 45 TCIRG1 10312 broad.mit.edu 36 11 67573234 67573234 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67573234 67573234 TCIRG1 11 T T C 58 CCDC90B 60492 broad.mit.edu 36 11 82674662 82674662 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82674662 82674662 CCDC90B 11 A A G 8 FOLH1B 219595 broad.mit.edu 36 11 89063844 89063845 + Missense_Mutation DNP CA CA TT novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 89063844 89063845 FOLH1B 11 CA CA TT 21 TREH 11181 broad.mit.edu 36 11 118036560 118036560 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 118036560 118036560 TREH 11 T T G 63 SORL1 6653 broad.mit.edu 36 11 120896704 120896704 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120896704 120896704 SORL1 11 G G C 43 GPRC5D 55507 broad.mit.edu 36 12 12994440 12994440 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12994440 12994440 GPRC5D 12 C C A 31 ENDOU 8909 broad.mit.edu 36 12 46398208 46398208 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46398208 46398208 ENDOU 12 T T C 54 ATF1 466 broad.mit.edu 36 12 49494460 49494460 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49494460 49494460 ATF1 12 G G C 45 ERBB3 2065 broad.mit.edu 36 12 54763866 54763866 + Silent SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 54763866 54763866 ERBB3 12 G G T 48 UHRF1BP1L 23074 broad.mit.edu 36 12 99021836 99021836 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99021836 99021836 UHRF1BP1L 12 G G A 48 TCHP 84260 broad.mit.edu 36 12 108836700 108836700 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 108836700 108836700 TCHP 12 T T C 55 DHX37 57647 broad.mit.edu 36 12 124017294 124017294 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124017294 124017294 DHX37 12 C C T 29 ATP8A2 51761 broad.mit.edu 36 13 25051012 25051012 + Silent SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 25051012 25051012 ATP8A2 13 C C T 26 RNASE1 6035 broad.mit.edu 36 14 20339645 20339645 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20339645 20339645 RNASE1 14 G G T 42 RAB2B 84932 broad.mit.edu 36 14 21006713 21006713 + Nonsense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 21006713 21006713 RAB2B 14 G G T 36 MYH6 4624 broad.mit.edu 36 14 22935767 22935767 + Silent SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 22935767 22935767 MYH6 14 G G A 44 BRF1 2972 broad.mit.edu 36 14 104756594 104756594 + Silent SNP T T C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 104756594 104756594 BRF1 14 T T C 56 C15orf2 23742 broad.mit.edu 36 15 22472345 22472345 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22472345 22472345 C15orf2 15 G G A 38 HERC2 8924 broad.mit.edu 36 15 26152448 26152448 + Silent SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 26152448 26152448 HERC2 15 G G A 37 PIGB 9488 broad.mit.edu 36 15 53420190 53420191 + Nonsense_Mutation DNP TC TC GA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation DNP 53420190 53420191 PIGB 15 TC TC GA 62 IGDCC3 9543 broad.mit.edu 36 15 63408533 63408533 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63408533 63408533 IGDCC3 15 G G T 41 CYP1A1 1543 broad.mit.edu 36 15 72802408 72802409 + Missense_Mutation DNP GG GG CC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 72802408 72802409 CYP1A1 15 GG GG CC 35 POLR2C 5432 broad.mit.edu 36 16 56060662 56060662 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56060662 56060662 POLR2C 16 G G A 48 GPR114 221188 broad.mit.edu 36 16 56156449 56156449 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56156449 56156449 GPR114 16 T T G 51 WDR59 79726 broad.mit.edu 36 16 73477099 73477099 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73477099 73477099 WDR59 16 T T C 62 RILP 83547 broad.mit.edu 36 17 1498431 1498432 + Missense_Mutation DNP CT CT TC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 1498431 1498432 RILP 17 CT CT TC 20 RILP 83547 broad.mit.edu 36 17 1498438 1498438 + Silent SNP T T C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 1498438 1498438 RILP 17 T T C 56 KSR1 8844 broad.mit.edu 36 17 22959164 22959164 + Splice_Site_SNP SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 22959164 22959164 KSR1 17 G G T 44 GIT1 28964 broad.mit.edu 36 17 24928380 24928380 + Silent SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 24928380 24928380 GIT1 17 C C T 28 SSH2 85464 broad.mit.edu 36 17 25023173 25023173 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 25023173 25023173 SSH2 17 G G C 47 PTRF 284119 broad.mit.edu 36 17 37828412 37828412 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37828412 37828412 PTRF 17 T T A 54 EVPL 2125 broad.mit.edu 36 17 71517587 71517587 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71517587 71517587 EVPL 17 C C A 32 QRICH2 84074 broad.mit.edu 36 17 71801315 71801315 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71801315 71801315 QRICH2 17 T T C 63 UBE2O 63893 broad.mit.edu 36 17 71898724 71898724 + Silent SNP G G C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 71898724 71898724 UBE2O 17 G G C 33 DNAH17 8632 broad.mit.edu 36 17 73969356 73969356 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73969356 73969356 DNAH17 17 A A C 9 DNAH17 8632 broad.mit.edu 36 17 73969358 73969359 + Missense_Mutation DNP TC TC AG novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 73969358 73969359 DNAH17 17 TC TC AG 50 TBC1D16 125058 broad.mit.edu 36 17 75538167 75538168 + Missense_Mutation DNP CT CT GC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 75538167 75538168 TBC1D16 17 CT CT GC 28 RNF213 57674 broad.mit.edu 36 17 75952064 75952064 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75952064 75952064 RNF213 17 C C A 26 TRAPPC8 22878 broad.mit.edu 36 18 27747391 27747391 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27747391 27747391 TRAPPC8 18 G G A 45 KLHL14 57565 broad.mit.edu 36 18 28511206 28511206 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28511206 28511206 KLHL14 18 C C A 24 SERPINB4 6318 broad.mit.edu 36 18 59460015 59460015 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59460015 59460015 SERPINB4 18 C C T 27 CTDP1 9150 broad.mit.edu 36 18 75558969 75558970 + Missense_Mutation DNP CG CG GT novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 75558969 75558970 CTDP1 18 CG CG GT 31 ADNP2 22850 broad.mit.edu 36 18 75996151 75996151 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75996151 75996151 ADNP2 18 G G T 48 ATP8B3 148229 broad.mit.edu 36 19 1740034 1740035 + Missense_Mutation DNP GA GA CC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 1740034 1740035 ATP8B3 19 GA GA CC 41 RANBP3 8498 broad.mit.edu 36 19 5884475 5884475 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5884475 5884475 RANBP3 19 C C A 26 C19orf57 79173 broad.mit.edu 36 19 13862229 13862229 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13862229 13862229 C19orf57 19 A A G 15 UPF1 5976 broad.mit.edu 36 19 18835390 18835390 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18835390 18835390 UPF1 19 A A T 3 UPF1 5976 broad.mit.edu 36 19 18835392 18835392 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18835392 18835392 UPF1 19 C C T 26 SLC7A10 56301 broad.mit.edu 36 19 38393283 38393283 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38393283 38393283 SLC7A10 19 C C T 25 ZNF546 339327 broad.mit.edu 36 19 45212801 45212801 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45212801 45212801 ZNF546 19 A A T 4 CYP2A6 1548 broad.mit.edu 36 19 46042460 46042460 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46042460 46042460 CYP2A6 19 T T G 63 SIGLEC12 89858 broad.mit.edu 36 19 56694674 56694674 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56694674 56694674 SIGLEC12 19 G G A 40 ZNF324B 388569 broad.mit.edu 36 19 63658941 63658942 + Missense_Mutation DNP TC TC GT novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 63658941 63658942 ZNF324B 19 TC TC GT 54 DHX57 90957 broad.mit.edu 36 2 38918511 38918511 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38918511 38918511 DHX57 2 C C G 20 THADA 63892 broad.mit.edu 36 2 43373614 43373614 + Silent SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 43373614 43373614 THADA 2 G G A 36 SOCS5 9655 broad.mit.edu 36 2 46839758 46839758 + Silent SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 46839758 46839758 SOCS5 2 C C T 25 FAM161A 84140 broad.mit.edu 36 2 61934636 61934636 + Silent SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 61934636 61934636 FAM161A 2 G G A 41 CYP26B1 56603 broad.mit.edu 36 2 72213210 72213211 + Missense_Mutation DNP TC TC AA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 72213210 72213211 CYP26B1 2 TC TC AA 58 WBP1 23559 broad.mit.edu 36 2 74541197 74541198 + Missense_Mutation DNP GT GT CC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 74541197 74541198 WBP1 2 GT GT CC 44 FAM178B 51252 broad.mit.edu 36 2 96907404 96907404 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96907404 96907404 FAM178B 2 T T C 57 CNGA3 1261 broad.mit.edu 36 2 98379211 98379211 + Silent SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 98379211 98379211 CNGA3 2 C C T 31 NCKAP5 344148 broad.mit.edu 36 2 133256937 133256937 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 133256937 133256937 NCKAP5 2 G G T 42 WIPF1 7456 broad.mit.edu 36 2 175144666 175144666 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 175144666 175144666 WIPF1 2 G G T 44 TTN 7273 broad.mit.edu 36 2 179108485 179108485 + Silent SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 179108485 179108485 TTN 2 G G A 33 TTN 7273 broad.mit.edu 36 2 179140781 179140781 + Silent SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 179140781 179140781 TTN 2 C C T 20 SGPP2 130367 broad.mit.edu 36 2 223047552 223047552 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 223047552 223047552 SGPP2 2 G G A 40 KCNE4 23704 broad.mit.edu 36 2 223625895 223625895 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 223625895 223625895 KCNE4 2 G G A 37 DNTTIP1 116092 broad.mit.edu 36 20 43857488 43857488 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43857488 43857488 DNTTIP1 20 A A G 7 NKAIN4 128414 broad.mit.edu 36 20 61351772 61351773 + Missense_Mutation DNP AG AG GC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 61351772 61351773 NKAIN4 20 AG AG GC 11 IFNAR2 3455 broad.mit.edu 36 21 33556887 33556887 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33556887 33556887 IFNAR2 21 A A T 12 PKNOX1 5316 broad.mit.edu 36 21 43323267 43323267 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43323267 43323267 PKNOX1 21 A A G 10 MTP18 51537 broad.mit.edu 36 22 29154620 29154621 + Missense_Mutation DNP GA GA AG novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 29154620 29154621 MTP18 22 GA GA AG 33 TOM1 10043 broad.mit.edu 36 22 34073161 34073161 + Nonsense_Mutation SNP A A T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 34073161 34073161 TOM1 22 A A T 9 TBC1D22A 25771 broad.mit.edu 36 22 45886159 45886160 + Missense_Mutation DNP TT TT GC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 45886159 45886160 TBC1D22A 22 TT TT GC 64 BHLHE40 8553 broad.mit.edu 36 3 5000042 5000042 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5000042 5000042 BHLHE40 3 A A C 6 PFKFB4 5210 broad.mit.edu 36 3 48551058 48551058 + Splice_Site_SNP SNP T T A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 48551058 48551058 PFKFB4 3 T T A 55 MAPKAPK3 7867 broad.mit.edu 36 3 50630116 50630116 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50630116 50630116 MAPKAPK3 3 T T G 59 SUCLG2 8801 broad.mit.edu 36 3 67662214 67662214 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67662214 67662214 SUCLG2 3 G G T 45 EPHA6 285220 broad.mit.edu 36 3 98794229 98794229 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 98794229 98794229 EPHA6 3 C C T 30 KIAA2018 205717 broad.mit.edu 36 3 114859445 114859445 + Silent SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 114859445 114859445 KIAA2018 3 C C T 23 GP5 2814 broad.mit.edu 36 3 195599383 195599384 + Missense_Mutation DNP GG GG CA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 195599383 195599384 GP5 3 GG GG CA 39 MUC4 4585 broad.mit.edu 36 3 196961495 196961495 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 196961495 196961495 MUC4 3 T T G 57 WDR53 348793 broad.mit.edu 36 3 197772386 197772386 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 197772386 197772386 WDR53 3 T T C 52 CHRNA9 55584 broad.mit.edu 36 4 40050753 40050753 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40050753 40050753 CHRNA9 4 G G A 44 RASL11B 65997 broad.mit.edu 36 4 53426614 53426614 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53426614 53426614 RASL11B 4 C C T 22 TRAM1L1 133022 broad.mit.edu 36 4 118225351 118225351 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 118225351 118225351 TRAM1L1 4 T T G 52 DCTD 1635 broad.mit.edu 36 4 184052681 184052681 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 184052681 184052681 DCTD 4 C C G 25 FRG2 448831 broad.mit.edu 36 4 191183946 191183946 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 191183946 191183946 FRG2 4 G G T 41 SDHA 6389 broad.mit.edu 36 5 279126 279126 + Silent SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 279126 279126 SDHA 5 G G T 41 ZFR 51663 broad.mit.edu 36 5 32450949 32450949 + Silent SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 32450949 32450949 ZFR 5 G G A 47 DDX46 9879 broad.mit.edu 36 5 134149139 134149139 + Silent SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 134149139 134149139 DDX46 5 G G A 47 PCDHB9 56127 broad.mit.edu 36 5 140547997 140547997 + Silent SNP T T G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 140547997 140547997 PCDHB9 5 T T G 63 DPYSL3 1809 broad.mit.edu 36 5 146760540 146760540 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 146760540 146760540 DPYSL3 5 G G C 47 STK10 6793 broad.mit.edu 36 5 171466249 171466250 + Missense_Mutation DNP CG CG AA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 171466249 171466250 STK10 5 CG CG AA 27 RREB1 6239 broad.mit.edu 36 6 7127296 7127296 + Silent SNP G G C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 7127296 7127296 RREB1 6 G G C 41 RIMS1 22999 broad.mit.edu 36 6 72948915 72948915 + Silent SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 72948915 72948915 RIMS1 6 G G T 39 TPBG 7162 broad.mit.edu 36 6 83131803 83131803 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 83131803 83131803 TPBG 6 G G T 43 SYNE1 23345 broad.mit.edu 36 6 152602512 152602512 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152602512 152602512 SYNE1 6 G G A 33 SYNE1 23345 broad.mit.edu 36 6 152699818 152699819 + Missense_Mutation DNP TC TC AT novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 152699818 152699819 SYNE1 6 TC TC AT 62 ARL4A 10124 broad.mit.edu 36 7 12694730 12694730 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12694730 12694730 ARL4A 7 A A T 9 GRB10 2887 broad.mit.edu 36 7 50709731 50709731 + Silent SNP G G C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 50709731 50709731 GRB10 7 G G C 43 PCLO 27445 broad.mit.edu 36 7 82421790 82421790 + Nonsense_Mutation SNP C C A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 82421790 82421790 PCLO 7 C C A 32 ACN9 57001 broad.mit.edu 36 7 96585054 96585054 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96585054 96585054 ACN9 7 A A G 1 GAL3ST4 79690 broad.mit.edu 36 7 99596339 99596339 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99596339 99596339 GAL3ST4 7 G G C 44 CUX1 1523 broad.mit.edu 36 7 101669478 101669478 + Silent SNP C C A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 101669478 101669478 CUX1 7 C C A 19 NUP205 23165 broad.mit.edu 36 7 134952008 134952008 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134952008 134952008 NUP205 7 A A T 14 RP1L1 94137 broad.mit.edu 36 8 10506943 10506943 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10506943 10506943 RP1L1 8 C C G 23 SOX7 83595 broad.mit.edu 36 8 10621374 10621374 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10621374 10621374 SOX7 8 C C G 23 GLIS3 169792 broad.mit.edu 36 9 4107947 4107947 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4107947 4107947 GLIS3 9 A A C 14 FANCC 2176 broad.mit.edu 36 9 96909354 96909354 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96909354 96909354 FANCC 9 G G T 34 AKNA 80709 broad.mit.edu 36 9 116179165 116179165 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116179165 116179165 AKNA 9 C C T 26 CDK5RAP2 55755 broad.mit.edu 36 9 122239479 122239479 + Silent SNP C C G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 122239479 122239479 CDK5RAP2 9 C C G 21 TRAF1 7185 broad.mit.edu 36 9 122728061 122728062 + Missense_Mutation DNP AC AC GT novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 122728061 122728062 TRAF1 9 AC AC GT 6 TTC16 158248 broad.mit.edu 36 9 129529464 129529464 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129529464 129529464 TTC16 9 C C G 28 SH3GLB2 56904 broad.mit.edu 36 9 130816948 130816948 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130816948 130816948 SH3GLB2 9 C C A 30 LAMC3 10319 broad.mit.edu 36 9 132926412 132926413 + Missense_Mutation DNP CT CT GA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 132926412 132926413 LAMC3 9 CT CT GA 20 DBH 1621 broad.mit.edu 36 9 135491549 135491549 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135491549 135491549 DBH 9 C C T 27 EIF1AX 1964 broad.mit.edu 36 X 20066663 20066663 + Splice_Site_SNP SNP T T G novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 20066663 20066663 EIF1AX 23 T T G 55 ACRC 93953 broad.mit.edu 36 X 70740639 70740639 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70740639 70740639 ACRC 23 G G C 41 FAM50A 9130 broad.mit.edu 36 X 153331253 153331253 + Silent SNP C C T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 153331253 153331253 FAM50A 23 C C T 29 GAB3 139716 broad.mit.edu 36 X 153593771 153593771 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 153593771 153593771 GAB3 23 G G T 46 CHD5 26038 broad.mit.edu 36 1 6109327 6109328 + Frame_Shift_Ins INS - AT - novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 6109327 6109328 CHD5 1 - AT - 34 H6PD 9563 broad.mit.edu 36 1 9247369 9247372 + Frame_Shift_Del DEL GTCC - GTCC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 9247369 9247372 H6PD 1 GTCC - GTCC 36 CNKSR1 10256 broad.mit.edu 36 1 26388500 26388504 + Frame_Shift_Del DEL CAGCT - CAGCT novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 26388500 26388504 CNKSR1 1 CAGCT - CAGCT 25 ZMYM6 9204 broad.mit.edu 36 1 35225435 35225437 + In_Frame_Del DEL AAA - AAA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 35225435 35225437 ZMYM6 1 AAA - AAA 9 KIAA1462 57608 broad.mit.edu 36 10 30358209 30358215 + Frame_Shift_Del DEL GCCTCCC - GCCTCCC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 30358209 30358215 KIAA1462 10 GCCTCCC - GCCTCCC 42 DOCK1 1793 broad.mit.edu 36 10 128815893 128815928 + Splice_Site_Del DEL GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA - GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Del DEL 128815893 128815928 DOCK1 10 GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA - GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA 48 ACTN3 89 broad.mit.edu 36 11 66083371 66083374 + Frame_Shift_Del DEL GAGC - GAGC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 66083371 66083374 ACTN3 11 GAGC - GAGC 33 KBTBD7 84078 broad.mit.edu 36 13 40666239 40666276 + Frame_Shift_Del DEL TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA - TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 40666239 40666276 KBTBD7 13 TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA - TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA 55 FURIN 5045 broad.mit.edu 36 15 89225877 89225902 + Frame_Shift_Del DEL TGGCCGGCCTCAGCTGCGCCTTCATC - TGGCCGGCCTCAGCTGCGCCTTCATC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 89225877 89225902 FURIN 15 TGGCCGGCCTCAGCTGCGCCTTCATC - TGGCCGGCCTCAGCTGCGCCTTCATC 59 UBE2O 63893 broad.mit.edu 36 17 71898707 71898713 + Frame_Shift_Del DEL CCCTTGG - CCCTTGG novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 71898707 71898713 UBE2O 17 CCCTTGG - CCCTTGG 18 MYO9B 4650 broad.mit.edu 36 19 17166612 17166617 + In_Frame_Del DEL ACTCTC - ACTCTC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 17166612 17166617 MYO9B 19 ACTCTC - ACTCTC 10 CBFA2T2 9139 broad.mit.edu 36 20 31625730 31625760 + Splice_Site_Del DEL TATGTGTGAAACATTCATTTCTAATAGAGGA - TATGTGTGAAACATTCATTTCTAATAGAGGA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Del DEL 31625730 31625760 CBFA2T2 20 TATGTGTGAAACATTCATTTCTAATAGAGGA - TATGTGTGAAACATTCATTTCTAATAGAGGA 57 EPM2AIP1 9852 broad.mit.edu 36 3 37008083 37008084 + Frame_Shift_Ins INS - C - novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 37008083 37008084 EPM2AIP1 3 - C - 62 PDZRN3 23024 broad.mit.edu 36 3 73516624 73516640 + Frame_Shift_Del DEL CGGTGGCGTCGTCGCCA - CGGTGGCGTCGTCGCCA novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 73516624 73516640 PDZRN3 3 CGGTGGCGTCGTCGCCA - CGGTGGCGTCGTCGCCA 27 TACC3 10460 broad.mit.edu 36 4 1712463 1712482 + Frame_Shift_Del DEL CTTCAAGCGTTTTGAGAAAC - CTTCAAGCGTTTTGAGAAAC novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 1712463 1712482 TACC3 4 CTTCAAGCGTTTTGAGAAAC - CTTCAAGCGTTTTGAGAAAC 32 UNC5C 8633 broad.mit.edu 36 4 96325294 96325295 + Frame_Shift_Ins INS - T - novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 96325294 96325295 UNC5C 4 - T - 44 AGFG2 3268 broad.mit.edu 36 7 99999427 99999451 + Frame_Shift_Del DEL CTTCCCCCAGGCAGTGCCACCCACT - CTTCCCCCAGGCAGTGCCACCCACT novel Unknown TCGA-61-2095-01 TCGA-61-2095-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 99999427 99999451 AGFG2 7 CTTCCCCCAGGCAGTGCCACCCACT - CTTCCCCCAGGCAGTGCCACCCACT 28