Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context OIT3 170392 broad.mit.edu 36 10 74354372 74354372 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74354372 74354372 OIT3 10 T T A 50 GSTO2 119391 broad.mit.edu 36 10 106047396 106047396 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 106047396 106047396 GSTO2 10 C C T 22 PACS1 55690 broad.mit.edu 36 11 65757102 65757102 + Silent SNP G G C novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 65757102 65757102 PACS1 11 G G C 41 SERPINH1 871 broad.mit.edu 36 11 74960735 74960735 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74960735 74960735 SERPINH1 11 C C G 24 ACAD8 27034 broad.mit.edu 36 11 133632324 133632325 + Missense_Mutation DNP GG GG AT novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 133632324 133632325 ACAD8 11 GG GG AT 35 ITGB7 3695 broad.mit.edu 36 12 51876209 51876209 + Silent SNP G G A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 51876209 51876209 ITGB7 12 G G A 45 CAPS2 84698 broad.mit.edu 36 12 73973365 73973365 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73973365 73973365 CAPS2 12 C C A 28 N4BP2L2 10443 broad.mit.edu 36 13 31915740 31915740 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31915740 31915740 N4BP2L2 13 G G T 35 ZNF828 283489 broad.mit.edu 36 13 114108760 114108760 + Silent SNP T T C novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 114108760 114108760 ZNF828 13 T T C 50 DYNC1H1 1778 broad.mit.edu 36 14 101544407 101544407 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101544407 101544407 DYNC1H1 14 C C G 30 TGM7 116179 broad.mit.edu 36 15 41367123 41367123 + Silent SNP G G A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 41367123 41367123 TGM7 15 G G A 35 TIPIN 54962 broad.mit.edu 36 15 64428797 64428797 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64428797 64428797 TIPIN 15 C C G 21 SNX29 92017 broad.mit.edu 36 16 12479143 12479143 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12479143 12479143 SNX29 16 C C T 25 CDH3 1001 broad.mit.edu 36 16 67273825 67273825 + Silent SNP C C T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 67273825 67273825 CDH3 16 C C T 19 SHPK 23729 broad.mit.edu 36 17 3471376 3471376 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3471376 3471376 SHPK 17 T T C 51 TP53 7157 broad.mit.edu 36 17 7514728 7514728 + Nonsense_Mutation SNP G G A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 7514728 7514728 TP53 17 G G A 39 MYH4 4622 broad.mit.edu 36 17 10301583 10301583 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10301583 10301583 MYH4 17 G G T 48 C17orf102 400591 broad.mit.edu 36 17 29928688 29928688 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29928688 29928688 C17orf102 17 C C T 28 POLD1 5424 broad.mit.edu 36 19 55604717 55604717 + Silent SNP G G T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 55604717 55604717 POLD1 19 G G T 40 TLX2 3196 broad.mit.edu 36 2 74596361 74596361 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74596361 74596361 TLX2 2 C C G 30 COL5A2 1290 broad.mit.edu 36 2 189612490 189612490 + Silent SNP A A C novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 189612490 189612490 COL5A2 2 A A C 7 ACSL3 2181 broad.mit.edu 36 2 223494251 223494251 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 223494251 223494251 ACSL3 2 C C A 24 PPIL2 23759 broad.mit.edu 36 22 20369067 20369067 + Silent SNP G G A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 20369067 20369067 PPIL2 22 G G A 40 ZBED4 9889 broad.mit.edu 36 22 48666474 48666474 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48666474 48666474 ZBED4 22 C C G 22 NUP210 23225 broad.mit.edu 36 3 13335796 13335796 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13335796 13335796 NUP210 3 C C A 30 WNT7A 7476 broad.mit.edu 36 3 13871219 13871219 + Silent SNP G G A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 13871219 13871219 WNT7A 3 G G A 44 GRID2 2895 broad.mit.edu 36 4 93730328 93730328 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 93730328 93730328 GRID2 4 A A C 5 CDH18 1016 broad.mit.edu 36 5 19556547 19556547 + Silent SNP T T A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 19556547 19556547 CDH18 5 T T A 49 DMGDH 29958 broad.mit.edu 36 5 78358071 78358071 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 78358071 78358071 DMGDH 5 C C G 31 PPIC 5480 broad.mit.edu 36 5 122389422 122389422 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122389422 122389422 PPIC 5 A A C 2 ADAMTS19 171019 broad.mit.edu 36 5 129098563 129098563 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129098563 129098563 ADAMTS19 5 A A T 4 PCDHB7 56129 broad.mit.edu 36 5 140534449 140534449 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140534449 140534449 PCDHB7 5 G G A 40 PDGFRB 5159 broad.mit.edu 36 5 149496770 149496770 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 149496770 149496770 PDGFRB 5 G G C 35 DOCK2 1794 broad.mit.edu 36 5 169416307 169416307 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 169416307 169416307 DOCK2 5 G G A 39 MYLK4 340156 broad.mit.edu 36 6 2634129 2634129 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2634129 2634129 MYLK4 6 G G A 38 GABBR1 2550 broad.mit.edu 36 6 29706244 29706244 + Nonsense_Mutation SNP G G A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 29706244 29706244 GABBR1 6 G G A 47 EPHA7 2045 broad.mit.edu 36 6 94009931 94009931 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94009931 94009931 EPHA7 6 G G C 45 ABCA13 154664 broad.mit.edu 36 7 48399249 48399249 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48399249 48399249 ABCA13 7 T T C 59 HIP1 3092 broad.mit.edu 36 7 75025480 75025480 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75025480 75025480 HIP1 7 T T G 52 PLOD3 8985 broad.mit.edu 36 7 100643184 100643184 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100643184 100643184 PLOD3 7 T T A 50 FOXP2 93986 broad.mit.edu 36 7 114071986 114071986 + Nonsense_Mutation SNP G G T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 114071986 114071986 FOXP2 7 G G T 45 C7orf58 79974 broad.mit.edu 36 7 120664099 120664099 + Silent SNP A A G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 120664099 120664099 C7orf58 7 A A G 12 PARP12 64761 broad.mit.edu 36 7 139393278 139393278 + Splice_Site_SNP SNP T T A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 139393278 139393278 PARP12 7 T T A 55 TRPV5 56302 broad.mit.edu 36 7 142336330 142336330 + Silent SNP G G A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 142336330 142336330 TRPV5 7 G G A 44 RP1 6101 broad.mit.edu 36 8 55699974 55699974 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55699974 55699974 RP1 8 C C G 29 KIF24 347240 broad.mit.edu 36 9 34246558 34246558 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34246558 34246558 KIF24 9 G G C 47 TRPM3 80036 broad.mit.edu 36 9 72615968 72615968 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72615968 72615968 TRPM3 9 A A T 1 DCAF8L1 139425 broad.mit.edu 36 X 27908693 27908693 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27908693 27908693 DCAF8L1 23 C C G 23 BCOR 54880 broad.mit.edu 36 X 39801518 39801518 + Nonsense_Mutation SNP C C A novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 39801518 39801518 BCOR 23 C C A 30 HUWE1 10075 broad.mit.edu 36 X 53596376 53596376 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53596376 53596376 HUWE1 23 C C T 20 HTR2C 3358 broad.mit.edu 36 X 114047863 114047863 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 114047863 114047863 HTR2C 23 C C G 32 DDX26B 203522 broad.mit.edu 36 X 134534562 134534562 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2097-01 TCGA-61-2097-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134534562 134534562 DDX26B 23 C C T 20