Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context NOC2L 26155 broad.mit.edu 36 1 882497 882497 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 882497 882497 NOC2L 1 A A G 11 NUDC 10726 broad.mit.edu 36 1 27140889 27140889 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27140889 27140889 NUDC 1 G G A 43 COL16A1 1307 broad.mit.edu 36 1 31929813 31929813 + Silent SNP G G T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 31929813 31929813 COL16A1 1 G G T 33 ST3GAL3 6487 broad.mit.edu 36 1 44168413 44168413 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44168413 44168413 ST3GAL3 1 G G A 37 CDC7 8317 broad.mit.edu 36 1 91746068 91746068 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 91746068 91746068 CDC7 1 A A G 10 ARHGAP21 57584 broad.mit.edu 36 10 24949169 24949169 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24949169 24949169 ARHGAP21 10 C C G 31 DNMBP 23268 broad.mit.edu 36 10 101649751 101649751 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101649751 101649751 DNMBP 10 G G T 45 C10orf79 80217 broad.mit.edu 36 10 105910856 105910856 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105910856 105910856 C10orf79 10 C C T 32 KIF18A 81930 broad.mit.edu 36 11 28001961 28001961 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28001961 28001961 KIF18A 11 G G C 48 TTC17 55761 broad.mit.edu 36 11 43385634 43385634 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43385634 43385634 TTC17 11 G G C 45 SSSCA1 10534 broad.mit.edu 36 11 65094555 65094555 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65094555 65094555 SSSCA1 11 C C A 28 TRPC6 7225 broad.mit.edu 36 11 100880101 100880101 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100880101 100880101 TRPC6 11 G G T 41 USP2 9099 broad.mit.edu 36 11 118733205 118733205 + Silent SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 118733205 118733205 USP2 11 G G A 40 ZBTB44 29068 broad.mit.edu 36 11 129635972 129635972 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129635972 129635972 ZBTB44 11 G G A 33 PRMT8 56341 broad.mit.edu 36 12 3572531 3572531 + Silent SNP C C T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 3572531 3572531 PRMT8 12 C C T 18 SLC39A5 283375 broad.mit.edu 36 12 54916704 54916704 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54916704 54916704 SLC39A5 12 G G A 35 PIWIL1 9271 broad.mit.edu 36 12 129397538 129397538 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129397538 129397538 PIWIL1 12 T T A 60 RBM25 58517 broad.mit.edu 36 14 72648087 72648087 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72648087 72648087 RBM25 14 G G A 40 OR4N4 283694 broad.mit.edu 36 15 19883887 19883887 + Silent SNP G G C novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 19883887 19883887 OR4N4 15 G G C 45 MGA 23269 broad.mit.edu 36 15 39828855 39828855 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39828855 39828855 MGA 15 A A G 2 SPTBN5 51332 broad.mit.edu 36 15 39955714 39955715 + Missense_Mutation DNP CA CA TT novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 39955714 39955715 SPTBN5 15 CA CA TT 25 ZNF48 197407 broad.mit.edu 36 16 30316593 30316593 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30316593 30316593 ZNF48 16 C C A 26 TP53 7157 broad.mit.edu 36 17 7518276 7518276 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518276 7518276 TP53 17 C C A 22 STAT5B 6777 broad.mit.edu 36 17 37613252 37613252 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37613252 37613252 STAT5B 17 G G C 33 ATP8B1 5205 broad.mit.edu 36 18 53506591 53506591 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53506591 53506591 ATP8B1 18 G G A 40 LONP1 9361 broad.mit.edu 36 19 5651873 5651873 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5651873 5651873 LONP1 19 A A T 7 PIK3R2 5296 broad.mit.edu 36 19 18137981 18137981 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18137981 18137981 PIK3R2 19 G G A 45 IL4I1 259307 broad.mit.edu 36 19 55091074 55091074 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55091074 55091074 IL4I1 19 G G C 41 PPP2R1A 5518 broad.mit.edu 36 19 57407794 57407794 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57407794 57407794 PPP2R1A 19 C C T 27 YIPF4 84272 broad.mit.edu 36 2 32370801 32370801 + Silent SNP T T C novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 32370801 32370801 YIPF4 2 T T C 64 SNRNP200 23020 broad.mit.edu 36 2 96312785 96312785 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96312785 96312785 SNRNP200 2 G G A 39 IL18R1 8809 broad.mit.edu 36 2 102379668 102379668 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102379668 102379668 IL18R1 2 C C G 32 GRB14 2888 broad.mit.edu 36 2 165057912 165057912 + Silent SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 165057912 165057912 GRB14 2 G G A 48 CCDC141 285025 broad.mit.edu 36 2 179410662 179410662 + Silent SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 179410662 179410662 CCDC141 2 G G A 36 LANCL1 10314 broad.mit.edu 36 2 211007490 211007490 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 211007490 211007490 LANCL1 2 G G A 43 OR6B3 150681 broad.mit.edu 36 2 240634001 240634001 + Silent SNP G G T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 240634001 240634001 OR6B3 2 G G T 43 ANO7 50636 broad.mit.edu 36 2 241798559 241798559 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 241798559 241798559 ANO7 2 T T G 54 VSTM2L 128434 broad.mit.edu 36 20 36005858 36005858 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36005858 36005858 VSTM2L 20 C C T 19 KRTAP13-1 140258 broad.mit.edu 36 21 30690461 30690461 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30690461 30690461 KRTAP13-1 21 G G T 34 MN1 4330 broad.mit.edu 36 22 26524044 26524044 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26524044 26524044 MN1 22 T T C 59 MYH9 4627 broad.mit.edu 36 22 35026157 35026157 + Nonsense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 35026157 35026157 MYH9 22 G G A 46 C4orf44 345222 broad.mit.edu 36 4 3224946 3224946 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3224946 3224946 C4orf44 4 G G A 37 PPP2R2C 5522 broad.mit.edu 36 4 6425167 6425167 + Silent SNP G G T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 6425167 6425167 PPP2R2C 4 G G T 45 DNAH5 1767 broad.mit.edu 36 5 13823873 13823873 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13823873 13823873 DNAH5 5 C C T 23 GIN1 54826 broad.mit.edu 36 5 102451740 102451740 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102451740 102451740 GIN1 5 C C G 32 SLC23A1 9963 broad.mit.edu 36 5 138746824 138746824 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 138746824 138746824 SLC23A1 5 G G C 44 PCDHB3 56132 broad.mit.edu 36 5 140461793 140461793 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140461793 140461793 PCDHB3 5 T T C 62 FCHSD1 89848 broad.mit.edu 36 5 141001279 141001279 + Silent SNP C C T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 141001279 141001279 FCHSD1 5 C C T 23 RANBP6 26953 broad.mit.edu 36 9 6003873 6003873 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6003873 6003873 RANBP6 9 C C T 30 FIGF 2277 broad.mit.edu 36 X 15286135 15286135 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15286135 15286135 FIGF 23 G G A 43 CNKSR2 22866 broad.mit.edu 36 X 21537357 21537357 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21537357 21537357 CNKSR2 23 C C T 27 SLC25A14 9016 broad.mit.edu 36 X 129306840 129306840 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129306840 129306840 SLC25A14 23 C C A 21 FOXN4 121643 broad.mit.edu 36 12 108202014 108202022 + In_Frame_Del DEL GGGTTAGGC - GGGTTAGGC novel Unknown TCGA-61-2111-01 TCGA-61-2111-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 108202014 108202022 FOXN4 12 GGGTTAGGC - GGGTTAGGC 43