Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ECE1 1889 broad.mit.edu 36 1 21444134 21444134 + Missense_Mutation SNP A A C novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a PTPRU 10076 broad.mit.edu 36 1 29504461 29504461 + Missense_Mutation SNP C C A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a LPPR4 9890 broad.mit.edu 36 1 99544192 99544192 + Missense_Mutation SNP T T A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a SHE 126669 broad.mit.edu 36 1 152728203 152728203 + Missense_Mutation SNP C C A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a SPTA1 6708 broad.mit.edu 36 1 156917982 156917982 + Missense_Mutation SNP C C G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a AIM2 9447 broad.mit.edu 36 1 157302731 157302731 + Missense_Mutation SNP G G T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a HMCN1 83872 broad.mit.edu 36 1 184101573 184101573 + Silent SNP A A C novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a CACNA1S 779 broad.mit.edu 36 1 199306144 199306144 + Missense_Mutation SNP C C T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a KRTAP5-3 387266 broad.mit.edu 36 11 1586141 1586141 + Silent SNP A A G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a ACCSL 390110 broad.mit.edu 36 11 44031588 44031588 + Silent SNP C C A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a NUP160 23279 broad.mit.edu 36 11 47826395 47826395 + Missense_Mutation SNP C C G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a FADD 8772 broad.mit.edu 36 11 69729942 69729942 + Missense_Mutation SNP G G C novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a RSF1 51773 broad.mit.edu 36 11 77055836 77055836 + Missense_Mutation SNP T T C novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a CARD18 59082 broad.mit.edu 36 11 104514961 104514961 + Missense_Mutation SNP G G T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a VWF 7450 broad.mit.edu 36 12 5998813 5998813 + Silent SNP G G A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a RBP5 83758 broad.mit.edu 36 12 7172153 7172153 + Missense_Mutation SNP C C G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a CD163L1 283316 broad.mit.edu 36 12 7419173 7419173 + Missense_Mutation SNP T T C novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a RNF31 55072 broad.mit.edu 36 14 23689492 23689492 + Missense_Mutation SNP C C A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a SHC4 399694 broad.mit.edu 36 15 46947314 46947314 + Silent SNP A A G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a HCN4 10021 broad.mit.edu 36 15 71404475 71404475 + Missense_Mutation SNP G G T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a PPL 5493 broad.mit.edu 36 16 4880198 4880198 + Silent SNP C C T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a DCUN1D3 123879 broad.mit.edu 36 16 20781014 20781014 + Silent SNP A A G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a CNOT1 23019 broad.mit.edu 36 16 57133879 57133879 + Missense_Mutation SNP G G C novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a DNAH17 8632 broad.mit.edu 36 17 74034652 74034652 + Missense_Mutation SNP T T G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 T T G G T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a PPAN-P2RY11 692312 broad.mit.edu 36 19 10086200 10086200 + Missense_Mutation SNP A A C novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a APLP1 333 broad.mit.edu 36 19 41061911 41061911 + Silent SNP C C G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a ZNF224 7767 broad.mit.edu 36 19 49302639 49302639 + Missense_Mutation SNP C C G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a GRLF1 2909 broad.mit.edu 36 19 52115784 52115784 + Missense_Mutation SNP T T A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 T T A A T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a ABCG5 64240 broad.mit.edu 36 2 43904698 43904698 + Silent SNP C C A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a PAPOLG 64895 broad.mit.edu 36 2 60852164 60852164 + Missense_Mutation SNP C C G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a BMP10 27302 broad.mit.edu 36 2 68946356 68946356 + Missense_Mutation SNP G G A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a LRRTM1 347730 broad.mit.edu 36 2 80383703 80383703 + Silent SNP C C A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a ZSWIM2 151112 broad.mit.edu 36 2 187401221 187401221 + Missense_Mutation SNP T T C novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a SEL1L2 80343 broad.mit.edu 36 20 13815034 13815034 + Missense_Mutation SNP G G A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a BOC 91653 broad.mit.edu 36 3 114452142 114452142 + Missense_Mutation SNP G G A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a HERC6 55008 broad.mit.edu 36 4 89533744 89533744 + Missense_Mutation SNP C C T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a LARP7 51574 broad.mit.edu 36 4 113790234 113790234 + Missense_Mutation SNP T T G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a TNIP1 10318 broad.mit.edu 36 5 150421932 150421932 + Silent SNP G G C novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a SERPINB1 1992 broad.mit.edu 36 6 2779179 2779179 + Missense_Mutation SNP C C T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a AIF1 199 broad.mit.edu 36 6 31692100 31692100 + Missense_Mutation SNP A A T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a LRFN2 57497 broad.mit.edu 36 6 40508130 40508130 + Missense_Mutation SNP G G T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a PRPH2 5961 broad.mit.edu 36 6 42797589 42797589 + Missense_Mutation SNP C C G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a EPHA1 2041 broad.mit.edu 36 7 142804789 142804789 + Missense_Mutation SNP C C T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a CNBD1 168975 broad.mit.edu 36 8 88318266 88318266 + Missense_Mutation SNP T T G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a PKHD1L1 93035 broad.mit.edu 36 8 110604253 110604253 + Silent SNP G G A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a RFX3 5991 broad.mit.edu 36 9 3291562 3291562 + Missense_Mutation SNP G G C novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a FCN1 2219 broad.mit.edu 36 9 136949470 136949470 + Missense_Mutation SNP C C G novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a SCML1 6322 broad.mit.edu 36 X 17678068 17678068 + Missense_Mutation SNP G G A novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a DRP2 1821 broad.mit.edu 36 X 100380655 100380655 + Silent SNP C C T novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a TJP1 7082 broad.mit.edu 36 15 27798088 27798104 + Frame_Shift_Del DEL TGGGCCCTGCTGAAGGG - TGGGCCCTGCTGAAGGG novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 TGGGCCCTGCTGAAGGG TGGGCCCTGCTGAAGGG - - TGGGCCCTGCTGAAGGG TGGGCCCTGCTGAAGGG Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a ABCF1 23 broad.mit.edu 36 6 30658158 30658172 + In_Frame_Del DEL GGAAGAAGGAGAAGG - GGAAGAAGGAGAAGG novel none TCGA-04-1356-01A-01W-0492-08 TCGA-04-1356-11A-01W-0492-08 GGAAGAAGGAGAAGG GGAAGAAGGAGAAGG - - GGAAGAAGGAGAAGG GGAAGAAGGAGAAGG Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 2582c67b-68ca-41f6-aa16-f11bfad6aef3 f76d625e-f485-45d5-9734-5b8cef83243a