Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error AKNAD1 254268 genome.wustl.edu 36 1 109196288 109196288 + Silent SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 1 109196288 109196288 C T SNP C1orf62 NM_152763 human genbank 54_36p -1 validated silent c.522 p.P174 NULL - - no_errors ADORA3 140 genome.wustl.edu 36 1 111847261 111847261 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 1 111847261 111847261 A T SNP ADORA3 NM_020683 human genbank 54_36p -1 reviewed missense c.239 p.F80Y 1 NULL - - no_errors FAM20B 9917 genome.wustl.edu 36 1 177300122 177300122 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 1 177300122 177300122 G T SNP FAM20B NM_014864 human genbank 54_36p 1 validated missense c.806 p.G269V 1 NULL - - no_errors ARHGEF10L 55160 genome.wustl.edu 36 1 17823526 17823526 + Missense_Mutation SNP G G A Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 1 17823526 17823526 G A SNP ARHGEF10L NM_018125 human genbank 54_36p 1 validated missense c.1258 p.A420T 1 NULL - - no_errors PTGS2 5743 genome.wustl.edu 36 1 184912345 184912345 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 1 184912345 184912345 C T SNP PTGS2 NM_000963 human genbank 54_36p -1 reviewed missense c.847 p.G283S 0.99 HMMPfam_An_peroxidase HMMPfam_An_peroxidase;HMMPfam_EGF;superfamily_Heme-dependent peroxidases;superfamily_EGF/Laminin - no_errors TXLNA 200081 genome.wustl.edu 36 1 32433268 32433268 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 1 32433268 32433268 G T SNP TXLNA NM_175852 human genbank 54_36p 1 validated missense c.1526 p.G509V 0.14 NULL - - no_errors EVI5 7813 genome.wustl.edu 36 1 92751926 92751926 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 1 92751926 92751926 G T SNP EVI5 NM_005665 human genbank 54_36p -1 validated missense c.2308 p.P770T 0.959 NULL - - no_errors VTI1A 143187 genome.wustl.edu 36 10 114565097 114565097 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 10 114565097 114565097 C G SNP VTI1A NM_145206 human genbank 54_36p 1 validated missense c.619 p.L207V 1 NULL - - no_errors PSAP 5660 genome.wustl.edu 36 10 73251668 73251668 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 10 73251668 73251668 G A SNP PSAP NM_001042465 human genbank 54_36p -1 reviewed missense c.889 p.P297S 1 NULL - - no_errors ENSG00000211964 0 genome.wustl.edu 36 14 106064967 106064967 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 14 106064967 106064967 G T SNP ENSG00000211964 ENST00000390624 human ensembl 54_36p -1 known missense c.243 p.D81E NULL - - no_stop_codon:bad_bp_length_for_coding_region NPAT 4863 genome.wustl.edu 36 11 107537471 107537471 + Silent SNP T T C novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 11 107537471 107537471 T C SNP NPAT NM_002519 human genbank 54_36p -1 validated silent c.3552 p.S1184 0.46 NULL - - no_errors MOGAT2 80168 genome.wustl.edu 36 11 75106597 75106597 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 11 75106597 75106597 C A SNP MOGAT2 NM_025098 human genbank 54_36p 1 provisional missense c.16 p.P6T 0.923 NULL - - no_errors MOGAT2 80168 genome.wustl.edu 36 11 75116767 75116767 + Missense_Mutation SNP G G A Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 11 75116767 75116767 G A SNP MOGAT2 NM_025098 human genbank 54_36p 1 provisional missense c.580 p.A194T 1 NULL - - no_errors ITPR2 3709 genome.wustl.edu 36 12 26463359 26463359 + Missense_Mutation SNP T T G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 12 26463359 26463359 T G SNP ITPR2 NM_002223 human genbank 54_36p -1 validated missense c.7000 p.T2334P 1 NULL - - no_errors OR4E2 26686 genome.wustl.edu 36 14 21204039 21204039 + Silent SNP C C G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 14 21204039 21204039 C G SNP OR4E2 NM_001001912 human genbank 54_36p 1 validated silent c.903 p.L301 0.69 NULL HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like - no_errors MYH11 4629 genome.wustl.edu 36 16 15743116 15743116 + Splice_Site SNP A A T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 16 15743116 15743116 A T SNP MYH11 NM_001040114 human genbank 54_36p -1 reviewed splice_site c.2673+2 e21+2 1 - - - no_errors LOC100131046 100131046 genome.wustl.edu 36 16 20074259 20074259 + RNA SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 16 20074259 20074259 C T SNP LOC100131046 XR_037711 human genbank 54_36p 1 model rna NULL NULL 0.132 - - - pseudogene DNAH3 55567 genome.wustl.edu 36 16 20970551 20970551 + Silent SNP A A G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 16 20970551 20970551 A G SNP DNAH3 NM_017539 human genbank 54_36p -1 provisional silent c.4179 p.Y1393 1 NULL - - no_errors MEFV 4210 genome.wustl.edu 36 16 3239649 3239649 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 16 3239649 3239649 C T SNP MEFV NM_000243 human genbank 54_36p -1 reviewed missense c.1043 p.R348H 0 NULL HMMPfam_zf-B_box,HMMPfam_SPRY,HMMPfam_PAAD_DAPIN,superfamily_DEATH domain,superfamily_B-box zinc-binding domain - no_errors NUP93 9688 genome.wustl.edu 36 16 55423717 55423717 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 16 55423717 55423717 G T SNP NUP93 NM_014669 human genbank 54_36p 1 validated missense c.1261 p.V421L 1 HMMPfam_NIC HMMPfam_NIC - no_errors SNORD3A 780851 genome.wustl.edu 36 17 19032095 19032095 + RNA SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 17 19032095 19032095 C T SNP SNORD3A ENST00000365494 human ensembl 54_36p 1 known rna NULL NULL 0.99 - - - no_errors MYO18A 399687 genome.wustl.edu 36 17 24442013 24442013 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 17 24442013 24442013 C G SNP MYO18A NM_078471 human genbank 54_36p -1 validated missense c.5245 p.E1749Q 1 NULL HMMPfam_Myosin_head;superfamily_Regulator of G-protein signaling RGS;superfamily_P-loop containing nucleoside triphosphate hydrolases;HMMPfam_IQ;HMMPfam_PDZ;superfamily_PDZ domain-like - no_errors PECAM1 5175 genome.wustl.edu 36 17 59791381 59791381 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 17 59791381 59791381 C T SNP PECAM1 ENST00000375748 human ensembl 54_36p -1 known missense c.130 p.V44I NULL - - no_stop_codon TP53 7157 genome.wustl.edu 36 17 7518305 7518305 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 17 7518305 7518305 T C SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.701 p.Y234C 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors CHST9 83539 genome.wustl.edu 36 18 22750325 22750325 + Missense_Mutation SNP C C T Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 18 22750325 22750325 C T SNP CHST9 NM_031422 human genbank 54_36p -1 validated missense c.1228 p.V410M 0.961 NULL - - no_errors EPS15L1 58513 genome.wustl.edu 36 19 16333718 16333718 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 19 16333718 16333718 C G SNP EPS15L1 NM_021235 human genbank 54_36p -1 provisional missense c.2458 p.D820H 1 NULL HMMPfam_efhand;superfamily_Prefoldin;superfamily_Ferritin-like;superfamily_EF-hand - no_errors PDE4C 5143 genome.wustl.edu 36 19 18188666 18188666 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 19 18188666 18188666 A G SNP PDE4C NM_000923 human genbank 54_36p -1 validated missense c.1370 p.L457P 1 HMMPfam_PDEase_I HMMPfam_PDEase_I;superfamily_HD-domain/PDEase-like - no_errors TMEM59L 25789 genome.wustl.edu 36 19 18588888 18588888 + Missense_Mutation SNP C C A Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C A C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 19 18588888 18588888 C A SNP TMEM59L NM_012109 human genbank 54_36p 1 reviewed missense c.640 p.P214T 0.531 NULL - - no_errors ATP13A1 57130 genome.wustl.edu 36 19 19617787 19617787 + Nonsense_Mutation SNP G G A Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 19 19617787 19617787 G A SNP ATP13A1 NM_020410 human genbank 54_36p -1 validated nonsense c.2902 p.Q968* 0.991 NULL HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M - no_errors NLRP13 126204 genome.wustl.edu 36 19 61099174 61099174 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 19 61099174 61099174 C A SNP NLRP13 NM_176810 human genbank 54_36p -1 validated missense c.3081 p.M1027I 0.05 NULL HMMPfam_LRR_1;HMMPfam_PAAD_DAPIN;HMMPfam_NACHT;superfamily_DEATH domain;superfamily_RNI-like;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors ZNF304 57343 genome.wustl.edu 36 19 62559698 62559698 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 19 62559698 62559698 T C SNP ZNF304 NM_020657 human genbank 54_36p 1 validated missense c.649 p.Y217H NULL HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers - no_errors RDH8 50700 genome.wustl.edu 36 19 9988889 9988889 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 19 9988889 9988889 T A SNP RDH8 NM_015725 human genbank 54_36p 1 validated missense c.260 p.L87Q 1 HMMPfam_adh_short HMMPfam_adh_short;superfamily_NAD(P)-binding Rossmann-fold domains - no_errors SULT1C2 6819 genome.wustl.edu 36 2 108287559 108287559 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 2 108287559 108287559 A G SNP SULT1C2 NM_176825 human genbank 54_36p 1 reviewed missense c.506 p.E169G 0.98 HMMPfam_Sulfotransfer_1 HMMPfam_Sulfotransfer_1;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors SCN1A 6323 genome.wustl.edu 36 2 166560768 166560768 + Splice_Site SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 2 166560768 166560768 C T SNP SCN1A NM_006920 human genbank 54_36p -1 validated splice_site c.4548+1 e24+1 1 - - - no_errors PPIG 9360 genome.wustl.edu 36 2 170201593 170201593 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 2 170201593 170201593 A G SNP PPIG NM_004792 human genbank 54_36p 1 validated missense c.1579 p.S527G 0.93 NULL - - no_errors DNMT3A 1788 genome.wustl.edu 36 2 25310663 25310663 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 2 25310663 25310663 C T SNP DNMT3A NM_022552 human genbank 54_36p -1 reviewed missense c.2728 p.A910T 1 NULL HMMPfam_PWWP;HMMPfam_DNA_methylase;superfamily_FYVE/PHD zinc finger;superfamily_S-adenosyl-L-methionine-dependent methyltransferases;superfamily_Tudor/PWWP/MBT - no_errors C20orf70 140683 genome.wustl.edu 36 20 31224419 31224419 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 20 31224419 31224419 G A SNP C20orf70 NM_080574 human genbank 54_36p 1 validated missense c.178 p.V60I NULL - - no_errors TRAPPC10 7109 genome.wustl.edu 36 21 44276400 44276400 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 21 44276400 44276400 G A SNP TRAPPC10 NM_003274 human genbank 54_36p 1 reviewed missense c.68 p.C23Y 1 NULL superfamily_TPR-like - no_errors DEPDC5 9681 genome.wustl.edu 36 22 30536507 30536507 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 22 30536507 30536507 C T SNP DEPDC5 NM_014662 human genbank 54_36p 1 validated missense c.1325 p.S442F 1 NULL "HMMPfam_DEP;superfamily_""Winged helix"" DNA-binding domain" - no_errors EIF3L 51386 genome.wustl.edu 36 22 36596199 36596199 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 22 36596199 36596199 C G SNP EIF3L NM_016091 human genbank 54_36p 1 validated missense c.650 p.S217C 1 NULL - - no_errors POLQ 10721 genome.wustl.edu 36 3 122690091 122690091 + Silent SNP T T A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 3 122690091 122690091 T A SNP POLQ NM_199420 human genbank 54_36p -1 validated silent c.4377 p.I1459 NULL HMMPfam_DNA_pol_A;HMMPfam_Helicase_C;HMMPfam_DEAD;superfamily_Ribonuclease H-like;superfamily_Immunoglobulin;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_DNA/RNA polymerases - no_errors PDIA5 10954 genome.wustl.edu 36 3 124362860 124362860 + Silent SNP T T A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 3 124362860 124362860 T A SNP PDIA5 NM_006810 human genbank 54_36p 1 provisional silent c.1347 p.I449 0.976 NULL - - no_errors XPC 7508 genome.wustl.edu 36 3 14186991 14186991 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 3 14186991 14186991 G T SNP XPC ENST00000285021 human ensembl 54_36p -1 known missense c.363 p.D121E 0.01 NULL HMMPfam_Rad4 - no_errors CLASP2 23122 genome.wustl.edu 36 3 33518188 33518188 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 3 33518188 33518188 T A SNP CLASP2 NM_015097 human genbank 54_36p -1 validated missense c.4394 p.D1465V 1 NULL HMMPfam_HEAT;superfamily_ARM repeat - no_errors SETD5 55209 genome.wustl.edu 36 3 9450570 9450570 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 3 9450570 9450570 G A SNP SETD5 NM_001080517 human genbank 54_36p 1 provisional missense c.113 p.S38N 1 NULL - - no_errors ACSL1 2180 genome.wustl.edu 36 4 185916019 185916019 + Nonsense_Mutation SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 4 185916019 185916019 C T SNP ACSL1 NM_001995 human genbank 54_36p -1 reviewed nonsense c.1832 p.W611* 1 NULL HMMPfam_AMP-binding;superfamily_Acetyl-CoA synthetase-like - no_errors GNPDA2 132789 genome.wustl.edu 36 4 44413920 44413920 + Nonsense_Mutation SNP T T A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 4 44413920 44413920 T A SNP GNPDA2 NM_138335 human genbank 54_36p -1 provisional nonsense c.376 p.K126* 0.95 HMMPfam_Glucosamine_iso HMMPfam_Glucosamine_iso;superfamily_NagB/RpiA/CoA transferase-like - no_errors EVC 2121 genome.wustl.edu 36 4 5784250 5784250 + Silent SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 4 5784250 5784250 G T SNP EVC NM_153717 human genbank 54_36p 1 reviewed silent c.582 p.R194 0.04 NULL - - no_errors LVRN 206338 genome.wustl.edu 36 5 115364028 115364028 + Splice_Site SNP G G C novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 5 115364028 115364028 G C SNP LVRN NM_173800 human genbank 54_36p 1 validated splice_site c.1516-1 e8-1 1 - - - no_errors SLC12A2 6558 genome.wustl.edu 36 5 127512432 127512432 + Missense_Mutation SNP T T G Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T G T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 5 127512432 127512432 T G SNP SLC12A2 NM_001046 human genbank 54_36p 1 validated missense c.1969 p.L657V 1 NULL - - no_errors PCDHGC5 56097 genome.wustl.edu 36 5 140849910 140849910 + Missense_Mutation SNP C A A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 5 140849910 140849910 C A SNP PCDHGC5 NM_018929 human genbank 54_36p 1 reviewed missense c.919 p.P307T 0.54 NULL - - no_errors C5orf42 65250 genome.wustl.edu 36 5 37205347 37205347 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 5 37205347 37205347 G T SNP C5orf42 NM_023073 human genbank 54_36p -1 predicted missense c.3176 p.S1059Y 0.01 NULL - - no_errors GPR98 84059 genome.wustl.edu 36 5 90088717 90088717 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 5 90088717 90088717 G C SNP GPR98 NM_032119 human genbank 54_36p 1 reviewed missense c.11923 p.E3975Q 0.98 NULL HMMPfam_GPS;HMMPfam_Calx-beta;HMMPfam_EPTP;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Phosphoglucomutase first 3 domains - no_errors OR5AK3P 81228 genome.wustl.edu 36 11 56495874 56495874 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 11 56495874 56495874 G A SNP OR5AK3P ENST00000326876 human ensembl 54_36p 1 known missense c.774 p.M258I NULL - - no_errors DNAH8 1769 genome.wustl.edu 36 6 39106034 39106034 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 6 39106034 39106034 A T SNP DNAH8 NM_001371 human genbank 54_36p 1 validated missense c.13361 p.K4454M 1 HMMPfam_Dynein_heavy HMMPfam_AAA_5;HMMPfam_DHC_N1;HMMPfam_DHC_N2;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases;HMMPfam_Dynein_heavy - no_errors PRPH2 5961 genome.wustl.edu 36 6 42797997 42797997 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 6 42797997 42797997 T A SNP PRPH2 NM_000322 human genbank 54_36p -1 reviewed missense c.54 p.Q18H 1 HMMPfam_Tetraspannin HMMPfam_Tetraspannin;superfamily_Tetraspanin - no_errors RIMS1 22999 genome.wustl.edu 36 6 72735448 72735448 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 6 72735448 72735448 C G SNP RIMS1 NM_014989 human genbank 54_36p 1 validated missense c.206 p.T69R 1 NULL HMMPfam_C2;HMMPfam_PDZ;superfamily_PDZ domain-like;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_FYVE/PHD zinc finger - no_errors UBE3C 9690 genome.wustl.edu 36 7 156733849 156733849 + Silent SNP G G A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 7 156733849 156733849 G A SNP UBE3C NM_014671 human genbank 54_36p 1 validated silent c.2508 p.E836 1 HMMPfam_HECT HMMPfam_IQ;HMMPfam_HECT;superfamily_Dihydrofolate reductases;superfamily_Hect E3 ligase catalytic domain - no_errors DFNA5 1687 genome.wustl.edu 36 7 24750786 24750786 + Silent SNP G G A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 7 24750786 24750786 G A SNP DFNA5 NM_004403 human genbank 54_36p -1 reviewed silent c.324 p.R108 0.03 NULL - - no_errors ABCB4 5244 genome.wustl.edu 36 7 86870405 86870405 + Silent SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 7 86870405 86870405 C T SNP ABCB4 NM_018849 human genbank 54_36p -1 reviewed silent c.3636 p.L1212 1 HMMPfam_ABC_tran HMMPfam_ABC_membrane;HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain - no_errors CSMD3 114788 genome.wustl.edu 36 8 113392466 113392466 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 8 113392466 113392466 C A SNP CSMD3 NM_198123 human genbank 54_36p -1 validated missense c.7802 p.R2601L 1 HMMPfam_Sushi HMMPfam_Sushi;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;superfamily_Complement control module/SCR domain - no_errors FAM91A1 157769 genome.wustl.edu 36 8 124881019 124881019 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 8 124881019 124881019 C G SNP FAM91A1 NM_144963 human genbank 54_36p 1 validated missense c.1639 p.P547A 1 NULL - - no_errors ST18 9705 genome.wustl.edu 36 8 53255238 53255238 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 8 53255238 53255238 C T SNP ST18 NM_014682 human genbank 54_36p -1 validated missense c.274 p.A92T 0.91 NULL - - no_errors OMD 4958 genome.wustl.edu 36 9 94218967 94218967 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 9 94218967 94218967 G T SNP OMD NM_005014 human genbank 54_36p -1 validated missense c.695 p.P232H 1 NULL HMMPfam_LRRNT;HMMPfam_LRR_1;superfamily_L domain-like - no_errors LOC642943 642943 genome.wustl.edu 36 9 94688065 94688065 + RNA SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d 9 94688065 94688065 G T SNP LOC642943 XR_039168 human genbank 54_36p 1 model rna NULL NULL 0.01 - - - pseudogene KIAA1210 57481 genome.wustl.edu 36 X 118123066 118123066 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d X 118123066 118123066 A T SNP KIAA1210 NM_020721 human genbank 54_36p -1 validated missense c.985 p.L329M NULL - - no_errors AIFM1 9131 genome.wustl.edu 36 X 129093440 129093440 + Silent SNP G G T novel Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d X 129093440 129093440 G T SNP AIFM1 NM_004208 human genbank 54_36p -1 reviewed silent c.1464 p.P488 0.49 NULL Pyr_redox;HMMPfam_Pyr_redox;Pyr_redox_2;HMMPfam_Pyr_redox_2;FAD/NAD(P)-binding domain;superfamily_FAD/NAD(P)-binding domain;FAD/NAD-linked reductases dimerisation (C-terminal) domain;superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain - no_errors MST4 51765 genome.wustl.edu 36 X 131034719 131034719 + Silent SNP C C T Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d X 131034719 131034719 C T SNP MST4 NM_016542 human genbank 54_36p 1 reviewed silent c.1143 p.L381 0.925 NULL Pkinase,HMMPfam_Pkinase - no_errors PFKFB1 5207 genome.wustl.edu 36 X 55037157 55037157 + Silent SNP T T G Unknown TCGA-04-1361-01A-01W-0494-09 TCGA-04-1361-11A-01W-0494-09 T T T G T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 0fc567bd-2201-4f3d-820e-2c0dbe58da6f d3ed75c6-ca30-4f83-8b1f-7ee17b3ca79d X 55037157 55037157 T G SNP PFKFB1 NM_002625 human genbank 54_36p -1 reviewed silent c.9 p.P3 0.922 NULL HMMPfam_PGAM,HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Phosphoglycerate mutase-like - no_errors