Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
IVL	3713	genome.wustl.edu	36	1	151149202	151149202	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	1	151149202	151149202	A	C	SNP	IVL	NM_005547	human	genbank	54_36p	1	reviewed	missense	c.305	p.E102A		NULL	HMMPfam_Involucrin	-	no_errors
CRB1	23418	genome.wustl.edu	36	1	195657676	195657676	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	1	195657676	195657676	C	T	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.2095	p.H699Y	1	HMMPfam_EGF	HMMPfam_EGF;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_EGF/Laminin	-	no_errors
ETNK2	55224	genome.wustl.edu	36	1	202383259	202383259	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	1	202383259	202383259	G	T	SNP	ETNK2	ENST00000367198	human	ensembl	54_36p	-1	known	missense	c.68	p.T23K		NULL	-	-	no_start_codon
RBBP4	5928	genome.wustl.edu	36	1	32895695	32895695	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	1	32895695	32895695	C	A	SNP	RBBP4	NM_005610	human	genbank	54_36p	1	reviewed	missense	c.245	p.A82D	1	NULL	-	-	no_errors
FAM183A	440585	genome.wustl.edu	36	1	43389041	43389041	+	Silent	SNP	C	C	G		Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	1	43389041	43389041	C	G	SNP	FAM183A	NM_001101376	human	genbank	54_36p	1	validated	silent	c.156	p.P52	1	NULL	-	-	no_errors
SYDE2	84144	genome.wustl.edu	36	1	85428505	85428505	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	1	85428505	85428505	A	C	SNP	SYDE2	NM_032184	human	genbank	54_36p	-1	validated	missense	c.1264	p.S422A	0.27	NULL	-	-	no_errors
CHUK	1147	genome.wustl.edu	36	10	101968473	101968473	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	10	101968473	101968473	G	A	SNP	CHUK	NM_001278	human	genbank	54_36p	-1	reviewed	silent	c.789	p.S263	1	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like);superfamily_Purine and uridine phosphorylases	-	no_errors
ENSG00000211945	0	genome.wustl.edu	36	14	105712750	105712750	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	14	105712750	105712750	A	T	SNP	ENSG00000211945	ENST00000390605	human	ensembl	54_36p	-1	known	missense	c.209	p.I70N		NULL	-	-	no_stop_codon:bad_bp_length_for_coding_region
C11orf63	79864	genome.wustl.edu	36	11	122279934	122279934	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	11	122279934	122279934	G	C	SNP	C11orf63	NM_024806	human	genbank	54_36p	1	validated	missense	c.436	p.A146P	0.01	NULL	-	-	no_errors
LOC645490	645490	genome.wustl.edu	36	11	20552850	20552851	+	Missense_Mutation	DNP	GG	TC	TC	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	GG	GG	TC	TC	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	11	20552850	20552851	GG	TC	DNP	LOC645490	XM_928515	human	genbank	54_36p	1	model	missense	c.325_326	p.G109S	1.000:1.000	NULL	-	-	no_errors
CARS	833	genome.wustl.edu	36	11	3004584	3004584	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	11	3004584	3004584	C	G	SNP	CARS	NM_001014437	human	genbank	54_36p	-1	reviewed	missense	c.1051	p.V351L	1	HMMPfam_tRNA-synt_1e	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases;superfamily_Glutathione S-transferase (GST) C-terminal domain;HMMPfam_tRNA-synt_1e;superfamily_Nucleotidylyl transferase	-	no_errors
OR5I1	10798	genome.wustl.edu	36	11	55459861	55459861	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	11	55459861	55459861	C	T	SNP	OR5I1	NM_006637	human	genbank	54_36p	-1	reviewed	missense	c.592	p.E198K	0.8	NULL	-	-	no_errors
PC	5091	genome.wustl.edu	36	11	66375126	66375126	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	11	66375126	66375126	T	C	SNP	PC	NM_000920	human	genbank	54_36p	-1	reviewed	silent	c.2184	p.E728	0.811	HMMPfam_HMGL-like	HMMPfam_HMGL-like,HMMPfam_PYC_OADA,HMMPfam_CPSase_L_D2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,superfamily_Rudiment single hybrid motif,superfamily_Aldolase,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,superfamily_post-HMGL domain-like,HMMPfam_Biotin_lipoyl	-	no_errors
PDE2A	5138	genome.wustl.edu	36	11	71977887	71977887	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	11	71977887	71977887	G	T	SNP	PDE2A	NM_002599	human	genbank	54_36p	-1	validated	missense	c.919	p.Q307K	1	HMMPfam_GAF	HMMPfam_PDEase_I,HMMPfam_GAF,superfamily_HD-domain/PDEase-like,superfamily_GAF domain-like	-	no_errors
HEPHL1	341208	genome.wustl.edu	36	11	93478930	93478930	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	11	93478930	93478930	A	T	SNP	HEPHL1	NM_001098672	human	genbank	54_36p	1	validated	missense	c.3031	p.S1011C	1	NULL	-	-	no_errors
ACAD10	80724	genome.wustl.edu	36	12	110671532	110671532	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	12	110671532	110671532	C	T	SNP	ACAD10	NM_025247	human	genbank	54_36p	1	reviewed	silent	c.2817	p.R939	0.51	NULL	-	-	no_errors
LRRIQ1	84125	genome.wustl.edu	36	12	83991003	83991003	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	12	83991003	83991003	G	C	SNP	LRRIQ1	NM_001079910	human	genbank	54_36p	1	validated	missense	c.2883	p.W961C	0.01	NULL	-	-	no_errors
PZP	5858	genome.wustl.edu	36	12	9246425	9246425	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	12	9246425	9246425	G	A	SNP	PZP	NM_002864	human	genbank	54_36p	-1	validated	silent	c.390	p.V130	1	HMMPfam_A2M_N	HMMPfam_A2M;HMMPfam_A2M_N;superfamily_Terpenoid cyclases/Protein prenyltransferases;superfamily_Invasin/intimin cell-adhesion fragments;HMMPfam_A2M_recep;superfamily_Alpha-macroglobulin receptor domain;HMMPfam_A2M_N_2;HMMPfam_A2M_comp	-	no_errors
DIAPH3	81624	genome.wustl.edu	36	13	59311503	59311503	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	13	59311503	59311503	G	A	SNP	DIAPH3	NM_001042517	human	genbank	54_36p	-1	validated	missense	c.2818	p.P940S	1	NULL	-	-	no_errors
TDP1	55775	genome.wustl.edu	36	14	89499549	89499552	+	Frame_Shift_Del	DEL	AGAA	AGAA	-		Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	AGAA	AGAA	AGAA	-	AGAA	AGAA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	14	89499549	89499552	AGAA	-	DEL	TDP1	NM_001008744	human	genbank	54_36p	1	reviewed	frame_shift_del	c.338_341	p.K114fs	0.643:0.282:0.061:0.048	NULL	HMMPfam_Tyr-DNA_phospho,superfamily_Phospholipase D/nuclease	(deletion:cds_exon[89499212,89499770])	no_errors
MIR513A1	574509	genome.wustl.edu	36	X	146102784	146102784	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	X	146102784	146102784	G	T	SNP	MIRN513A1	ENST00000385138	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.3	-	-	-	no_errors
RTF1	23168	genome.wustl.edu	36	15	39559776	39559776	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	15	39559776	39559776	G	C	SNP	RTF1	NM_015138	human	genbank	54_36p	1	validated	missense	c.1612	p.D538H	1	NULL	HMMPfam_Plus-3	-	no_errors
SLC28A2	9153	genome.wustl.edu	36	15	43341525	43341525	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	15	43341525	43341525	G	A	SNP	SLC28A2	NM_004212	human	genbank	54_36p	1	provisional	missense	c.191	p.S64N	0.02	NULL	-	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61739125	61739125	+	Nonsense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	15	61739125	61739125	A	C	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	nonsense	c.9287	p.L3096*	1	NULL	HMMPfam_RCC1;HMMPfam_HECT;HMMPfam_WD40;HMMPfam_SPRY;superfamily_RCC1/BLIP-II;superfamily_WD40 repeat-like;superfamily_Hect E3 ligase catalytic domain	-	no_errors
SEC11A	23478	genome.wustl.edu	36	15	83014261	83014261	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	15	83014261	83014261	C	T	SNP	SEC11A	NM_014300	human	genbank	54_36p	-1	provisional	missense	c.533	p.R178H	1	NULL	-	-	no_errors
JUP	3728	genome.wustl.edu	36	17	37165966	37165968	+	In_Frame_Del	DEL	CTC	CTC	-		Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	CTC	CTC	CTC	-	CTC	CTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	17	37165966	37165968	CTC	-	DEL	JUP	NM_002230	human	genbank	54_36p	-1	reviewed	in_frame_del	c.2073_2071	p.E691in_frame_del	0.953:0.993:0.998	NULL	superfamily_ARM repeat,Arm,HMMPfam_Arm,HEAT,HMMPfam_HEAT	(deletion:cds_exon[37165953,37165992])	no_errors
SCRN2	90507	genome.wustl.edu	36	17	43270947	43270947	+	Missense_Mutation	SNP	T	T	A		Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	17	43270947	43270947	T	A	SNP	SCRN2	NM_138355	human	genbank	54_36p	-1	validated	missense	c.887	p.D296V	0.998	NULL	-	-	no_errors
OTOP2	92736	genome.wustl.edu	36	17	70441188	70441188	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	17	70441188	70441188	C	T	SNP	OTOP2	NM_178160	human	genbank	54_36p	1	provisional	missense	c.1642	p.R548C	0.997	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518334	7518334	+	Splice_Site	SNP	C	T	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	17	7518334	7518334	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.673-1	e6-1	0.99	-	-	-	no_errors
TRAPPC8	22878	genome.wustl.edu	36	18	27698596	27698596	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	18	27698596	27698596	G	A	SNP	KIAA1012	NM_014939	human	genbank	54_36p	-1	validated	silent	c.2737	p.L913	1	NULL	superfamily_TPR-like	-	no_errors
AP1M1	8907	genome.wustl.edu	36	19	16206060	16206060	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	19	16206060	16206060	G	C	SNP	AP1M1	NM_032493	human	genbank	54_36p	1	reviewed	missense	c.1224	p.W408C	1	HMMPfam_Adap_comp_sub	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,superfamily_SNARE-like	-	no_errors
ZNF229	7772	genome.wustl.edu	36	19	49626013	49626013	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	19	49626013	49626013	T	C	SNP	ZNF229	NM_014518	human	genbank	54_36p	-1	validated	silent	c.783	p.G261		NULL	-	-	no_errors
SCN9A	6335	genome.wustl.edu	36	2	166851301	166851301	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	2	166851301	166851301	T	A	SNP	SCN9A	NM_002977	human	genbank	54_36p	-1	validated	missense	c.1393	p.T465S	0.92	NULL	HMMPfam_IQ;HMMPfam_Ion_trans;HMMPfam_Na_trans_assoc;superfamily_EF-hand;superfamily_Voltage-gated potassium channels	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169697435	169697435	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	2	169697435	169697435	C	G	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	silent	c.13623	p.V4541	0.02	NULL	HMMPfam_Ldl_recept_b;HMMPfam_Ldl_recept_a;HMMPfam_EGF;superfamily_Growth factor receptor domain;HMMPfam_EGF_CA;HMMPfam_EGF_2;superfamily_EGF/Laminin;superfamily_LDL receptor-like module;superfamily_YWTD domain	-	no_errors
GLS	2744	genome.wustl.edu	36	2	191527599	191527599	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	2	191527599	191527599	C	G	SNP	GLS	NM_014905	human	genbank	54_36p	1	validated	missense	c.1757	p.S586C	1	HMMPfam_Ank	HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_beta-lactamase/transpeptidase-like;HMMPfam_Glutaminase	-	no_errors
SOS1	6654	genome.wustl.edu	36	2	39066780	39066780	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	2	39066780	39066780	G	C	SNP	SOS1	NM_005633	human	genbank	54_36p	-1	reviewed	missense	c.3691	p.L1231V	1	NULL	HMMPfam_RhoGEF;HMMPfam_RasGEF_N;HMMPfam_PH;HMMPfam_RasGEF;HMMPfam_Histone;superfamily_Ras GEF;superfamily_Histone-fold;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like	-	no_errors
CDKL4	344387	genome.wustl.edu	36	2	39294099	39294099	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	2	39294099	39294099	G	C	SNP	CDKL4	NM_001009565	human	genbank	54_36p	-1	provisional	missense	c.309	p.I103M	1	HMMPfam_Pkinase	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
LOC730187	730187	genome.wustl.edu	36	2	64746640	64746640	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	2	64746640	64746640	C	T	SNP	LOC730187	XR_042354	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CNNM3	26505	genome.wustl.edu	36	2	96854663	96854663	+	Missense_Mutation	SNP	A	A	G		Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	2	96854663	96854663	A	G	SNP	CNNM3	NM_017623	human	genbank	54_36p	1	validated	missense	c.1367	p.Y456C	1	NULL	-	-	no_errors
SON	6651	genome.wustl.edu	36	21	33848752	33848752	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	21	33848752	33848752	C	T	SNP	SON	NM_138927	human	genbank	54_36p	1	reviewed	missense	c.5345	p.S1782F	0.93	NULL	HMMPfam_G-patch;HMMPfam_dsrm;superfamily_WD40 repeat-like;superfamily_dsRNA-binding domain-like	-	no_errors
FBXO40	51725	genome.wustl.edu	36	3	122824185	122824185	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	3	122824185	122824185	G	T	SNP	FBXO40	NM_016298	human	genbank	54_36p	1	validated	nonsense	c.1219	p.E407*	1	NULL	HMMPfam_F-box;superfamily_TRAF domain-like;superfamily_F-box domain	-	no_errors
CLGN	1047	genome.wustl.edu	36	4	141531248	141531248	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	4	141531248	141531248	G	A	SNP	CLGN	NM_004362	human	genbank	54_36p	-1	reviewed	missense	c.1736	p.S579F	1	NULL	HMMPfam_Calreticulin;superfamily_Concanavalin A-like lectins/glucanases;superfamily_P-domain of calnexin/calreticulin	-	no_errors
ADAMTS3	9508	genome.wustl.edu	36	4	73390622	73390622	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	4	73390622	73390622	G	C	SNP	ADAMTS3	NM_014243	human	genbank	54_36p	-1	reviewed	missense	c.2206	p.P736A	1	HMMPfam_ADAM_spacer1	"HMMPfam_TSP_1;HMMPfam_Reprolysin;HMMPfam_Pep_M12B_propep;HMMPfam_ADAM_spacer1;superfamily_Metalloproteases (""zincins"") catalytic domain;superfamily_TSP-1 type 1 repeat"	-	no_errors
LOC152845	152845	genome.wustl.edu	36	4	85385689	85385689	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	4	85385689	85385689	T	C	SNP	LOC152845	XR_038721	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
GPR78	27201	genome.wustl.edu	36	4	8635215	8635215	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	4	8635215	8635215	G	T	SNP	GPR78	NM_080819	human	genbank	54_36p	1	validated	missense	c.726	p.K242N	1	HMMPfam_7tm_1	7tm_1;HMMPfam_7tm_1;Family A G protein-coupled receptor-like;superfamily_Family A G protein-coupled receptor-like	-	no_errors
ODZ2	57451	genome.wustl.edu	36	5	167574777	167574777	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	5	167574777	167574777	G	C	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	1	known	missense	c.3997	p.E1333Q	1	NULL	-	-	no_errors
ZNF354A	6940	genome.wustl.edu	36	5	178072355	178072355	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	5	178072355	178072355	G	T	SNP	ZNF354A	NM_005649	human	genbank	54_36p	-1	validated	missense	c.1130	p.T377N	1	NULL	-	-	no_errors
ARL15	54622	genome.wustl.edu	36	5	53503386	53503386	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	5	53503386	53503386	C	A	SNP	ARL15	NM_019087	human	genbank	54_36p	-1	validated	missense	c.178	p.V60F	0.79	NULL	-	-	no_errors
NR2F1	7025	genome.wustl.edu	36	5	92955171	92955171	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	5	92955171	92955171	T	G	SNP	NR2F1	NM_005654	human	genbank	54_36p	1	provisional	missense	c.1139	p.V380G	1	HMMPfam_Hormone_recep	HMMPfam_Hormone_recep;HMMPfam_zf-C4;superfamily_Nuclear receptor ligand-binding domain;HMMPfam_zf-C4_C;superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
BEND3	57673	genome.wustl.edu	36	6	107498431	107498431	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	6	107498431	107498431	C	T	SNP	BEND3	NM_001080450	human	genbank	54_36p	-1	provisional	silent	c.657	p.L219	1	NULL	-	-	no_errors
LAMA2	3908	genome.wustl.edu	36	6	129868037	129868037	+	Splice_Site	SNP	G	T	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	6	129868037	129868037	G	T	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	splice_site	c.8548-1	e61-1	1	-	-	-	no_errors
AKAP7	9465	genome.wustl.edu	36	6	131644385	131644385	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	6	131644385	131644385	C	G	SNP	AKAP7	NM_016377	human	genbank	54_36p	1	reviewed	silent	c.807	p.P269	0.88	NULL	-	-	no_errors
ENPP3	5169	genome.wustl.edu	36	6	132037101	132037101	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	6	132037101	132037101	G	A	SNP	ENPP3	NM_005021	human	genbank	54_36p	1	reviewed	nonsense	c.749	p.W250*	1	HMMPfam_Phosphodiest	HMMPfam_Somatomedin_B;HMMPfam_Phosphodiest;superfamily_Alkaline phosphatase-like;superfamily_His-Me finger endonucleases;superfamily_Somatomedin B domain	-	no_errors
HIVEP2	3097	genome.wustl.edu	36	6	143132492	143132492	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	6	143132492	143132492	G	C	SNP	HIVEP2	NM_006734	human	genbank	54_36p	-1	provisional	missense	c.5077	p.L1693V	1	NULL	-	-	no_errors
TRIM39	56658	genome.wustl.edu	36	6	30417509	30417509	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	6	30417509	30417509	G	C	SNP	TRIM39	NM_021253	human	genbank	54_36p	1	reviewed	missense	c.1051	p.V351L	0.9	NULL	-	-	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121486093	121486093	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	7	121486093	121486093	G	A	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	1	reviewed	missense	c.6532	p.D2178N	1	HMMPfam_Y_phosphatase	superfamily_Carbonic anhydrase;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_(Phosphotyrosine protein) phosphatases II;HMMPfam_Y_phosphatase;HMMPfam_Carb_anhydrase	-	no_errors
MEST	4232	genome.wustl.edu	36	7	129925243	129925243	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	7	129925243	129925243	C	T	SNP	MEST	NM_002402	human	genbank	54_36p	1	reviewed	nonsense	c.367	p.Q123*	1	HMMPfam_Abhydrolase_1	HMMPfam_Abhydrolase_1;superfamily_alpha/beta-Hydrolases	-	no_errors
PLXNA4	91584	genome.wustl.edu	36	7	131483904	131483904	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	7	131483904	131483904	C	A	SNP	PLXNA4	NM_020911	human	genbank	54_36p	-1	validated	nonsense	c.4702	p.E1568*	1	NULL	-	-	no_errors
HOXA2	3199	genome.wustl.edu	36	7	27106929	27106929	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	7	27106929	27106929	T	C	SNP	HOXA2	NM_006735	human	genbank	54_36p	-1	reviewed	missense	c.1072	p.S358G	1	NULL	HMMPfam_Homeobox;superfamily_Homeodomain-like	-	no_errors
PKD1L1	168507	genome.wustl.edu	36	7	47872723	47872723	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	7	47872723	47872723	A	C	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	missense	c.3911	p.L1304R	0.96	NULL	-	-	no_errors
PKD1L1	168507	genome.wustl.edu	36	7	47900115	47900115	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	7	47900115	47900115	G	T	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	missense	c.2338	p.P780T	0.47	NULL	-	-	no_errors
RIMS2	9699	genome.wustl.edu	36	8	105079642	105079642	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	8	105079642	105079642	A	T	SNP	RIMS2	NM_014677	human	genbank	54_36p	1	validated	missense	c.2474	p.H825L	1	NULL	superfamily_PDZ domain-like;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);HMMPfam_C2;HMMPfam_PDZ	-	no_errors
CSGALNACT1	55790	genome.wustl.edu	36	8	19360412	19360412	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	8	19360412	19360412	T	C	SNP	CSGALNACT1	NM_018371	human	genbank	54_36p	-1	validated	missense	c.656	p.D219G	1	NULL	-	-	no_errors
EBF2	64641	genome.wustl.edu	36	8	25955570	25955570	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	8	25955570	25955570	C	A	SNP	EBF2	NM_022659	human	genbank	54_36p	-1	validated	missense	c.246	p.E82D	1	NULL	-	-	no_errors
CLU	1191	genome.wustl.edu	36	8	27518595	27518595	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	8	27518595	27518595	G	A	SNP	CLU	NM_001831	human	genbank	54_36p	-1	validated	missense	c.748	p.R250W		HMMPfam_Clusterin	HMMPfam_Clusterin	-	no_errors
ENSG00000211634	0	genome.wustl.edu	36	2	89886467	89886467	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	2	89886467	89886467	A	C	SNP	ENSG00000211634	ENST00000390279	human	ensembl	54_36p	1	known	silent	c.118	p.R40	0.02	NULL	-	-	no_stop_codon:bad_bp_length_for_coding_region
SMC2	10592	genome.wustl.edu	36	9	105927141	105927141	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	9	105927141	105927141	G	A	SNP	SMC2	NM_001042550	human	genbank	54_36p	1	validated	silent	c.2385	p.Q795	1	NULL	-	-	no_errors
SVEP1	79987	genome.wustl.edu	36	9	112208884	112208884	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	9	112208884	112208884	T	G	SNP	SVEP1	NM_153366	human	genbank	54_36p	-1	validated	silent	c.8817	p.A2939	0.7	NULL	-	-	no_errors
CA9	768	genome.wustl.edu	36	9	35666372	35666372	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	9	35666372	35666372	G	A	SNP	CA9	NM_001216	human	genbank	54_36p	1	reviewed	missense	c.826	p.A276T	1	HMMPfam_Carb_anhydrase	HMMPfam_Carb_anhydrase;superfamily_Carbonic anhydrase	-	no_errors
HEMGN	55363	genome.wustl.edu	36	9	99733038	99733038	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	9	99733038	99733038	C	A	SNP	HEMGN	NM_018437	human	genbank	54_36p	-1	validated	missense	c.460	p.A154S	0.01	NULL	-	-	no_errors
ZCCHC12	170261	genome.wustl.edu	36	X	117843682	117843682	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	X	117843682	117843682	G	A	SNP	ZCCHC12	NM_173798	human	genbank	54_36p	1	provisional	silent	c.447	p.V149	1	NULL	-	-	no_errors
THOC2	57187	genome.wustl.edu	36	X	122657585	122657585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	X	122657585	122657585	C	T	SNP	THOC2	NM_001081550	human	genbank	54_36p	-1	validated	missense	c.568	p.D190N	1	NULL	-	-	no_errors
MAGEB16	139604	genome.wustl.edu	36	X	35730537	35730537	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	X	35730537	35730537	T	A	SNP	MAGEB16	NM_001099921	human	genbank	54_36p	1	provisional	missense	c.303	p.D101E		NULL	-	-	no_errors
FAM47C	442444	genome.wustl.edu	36	X	36938334	36938334	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	X	36938334	36938334	C	G	SNP	FAM47C	NM_001013736	human	genbank	54_36p	1	provisional	missense	c.1930	p.P644A	0.65	NULL	-	-	no_errors
ELK1	2002	genome.wustl.edu	36	X	47385680	47385680	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	X	47385680	47385680	C	G	SNP	ELK1	NM_005229	human	genbank	54_36p	-1	reviewed	missense	c.105	p.K35N	1	HMMPfam_Ets	"HMMPfam_Ets;superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
WWC3	55841	genome.wustl.edu	36	X	9995469	9995469	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	830e207f-458e-4628-b7bc-287c2f2e12e5	629e5b70-2205-4a40-9575-f69c019edf53	X	9995469	9995469	C	T	SNP	WWC3	NM_015691	human	genbank	54_36p	1	validated	silent	c.159	p.A53	0.42	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_Spectrin repeat	-	no_errors