Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AFF3 3899 hgsc.bcm.edu 36 2 99989528 99989528 + Missense_Mutation SNP C C T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb AKAP9 10142 hgsc.bcm.edu 36 7 91490114 91490115 + In_Frame_Ins INS - - AAC rs10644111 TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb ASXL3 80816 hgsc.bcm.edu 36 18 29579797 29579798 + Frame_Shift_Ins INS - - G novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb BTN2A1 11120 hgsc.bcm.edu 36 6 26571485 26571486 + Frame_Shift_Del DEL CC CC - novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 CC CC . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb CHRNA7 1139 hgsc.bcm.edu 36 15 30237996 30237996 + Silent SNP G G A rs1042722 TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb COX10 1352 hgsc.bcm.edu 36 17 13913676 13913677 + Frame_Shift_Del DEL CA CA - novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 CA CA . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb CSMD1 64478 hgsc.bcm.edu 36 8 3250958 3250958 + Missense_Mutation SNP T T A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb DOCK11 139818 hgsc.bcm.edu 36 X 117615509 117615525 + Frame_Shift_Del DEL GCTACTTGAATCTGAAT GCTACTTGAATCTGAAT - novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 GCTACTTGAATCTGAAT GCTACTTGAATCTGAAT . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb EPS8L3 79574 hgsc.bcm.edu 36 1 110101296 110101296 + Nonsense_Mutation SNP G G T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb GART 2618 hgsc.bcm.edu 36 21 33803992 33803992 + Frame_Shift_Del DEL T T - novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb GRM1 2911 hgsc.bcm.edu 36 6 146393031 146393031 + Missense_Mutation SNP G G T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb NBPF12 440675 hgsc.bcm.edu 36 1 144929408 144929408 + Missense_Mutation SNP T T C rs4098124 TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb NCOA3 8202 hgsc.bcm.edu 36 20 45711204 45711205 + In_Frame_Ins INS - - CTG novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb OR11G2 390439 hgsc.bcm.edu 36 14 19736015 19736016 + Frame_Shift_Ins INS - - A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb RYR3 6263 hgsc.bcm.edu 36 15 31924372 31924374 + In_Frame_Del DEL AGA AGA - novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 AGA AGA . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb SLC12A9 56996 hgsc.bcm.edu 36 7 100292535 100292537 + In_Frame_Del DEL CGG CGG - novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 CGG CGG . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb TMPRSS2 7113 hgsc.bcm.edu 36 21 41762266 41762266 + Missense_Mutation SNP T T A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb TRIP12 9320 hgsc.bcm.edu 36 2 230377159 230377159 + Missense_Mutation SNP A A T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb ZFHX3 463 hgsc.bcm.edu 36 16 71549769 71549769 + Nonsense_Mutation SNP C C A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb C20orf85 128602 hgsc.bcm.edu 36 20 56169159 56169159 + Missense_Mutation SNP G G T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb COQ2 27235 hgsc.bcm.edu 36 4 84407796 84407796 + Silent SNP G G A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb DMD 1756 hgsc.bcm.edu 36 X 31049933 31049933 + Missense_Mutation SNP C C A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb GARNL1 253959 hgsc.bcm.edu 36 14 35144664 35144664 + Missense_Mutation SNP C C A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb GARNL1 253959 hgsc.bcm.edu 36 14 35174434 35174434 + Missense_Mutation SNP T T C novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 T T T C T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb HCN1 348980 hgsc.bcm.edu 36 5 45681093 45681093 + Missense_Mutation SNP C C A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb P2RY2 5029 hgsc.bcm.edu 36 11 72623100 72623100 + Missense_Mutation SNP C C T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb SNRPB 6628 hgsc.bcm.edu 36 20 2394385 2394385 + Missense_Mutation SNP G G A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb SNX7 51375 hgsc.bcm.edu 36 1 98933689 98933689 + Missense_Mutation SNP C C T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb ZNF354A 6940 hgsc.bcm.edu 36 5 178072848 178072848 + Missense_Mutation SNP G G A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb AKAP6 9472 hgsc.bcm.edu 36 14 32217296 32217296 + Missense_Mutation SNP C C T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb AKAP8 10270 hgsc.bcm.edu 36 19 15330826 15330826 + Missense_Mutation SNP A A C novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 A A A C A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb BAI3 577 hgsc.bcm.edu 36 6 69760509 69760509 + Missense_Mutation SNP G G T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G G T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb ELAVL2 1993 hgsc.bcm.edu 36 9 23682568 23682568 + Missense_Mutation SNP G G A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb MACF1 23499 hgsc.bcm.edu 36 1 39595898 39595898 + Missense_Mutation SNP G G A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb SLC5A12 159963 hgsc.bcm.edu 36 11 26661948 26661948 + Missense_Mutation SNP C C T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb TP53 7157 hgsc.bcm.edu 36 17 7519280 7519280 + Splice_Site SNP C C T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb TTN 7273 hgsc.bcm.edu 36 2 179354220 179354220 + Nonsense_Mutation SNP G G T novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G G T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb ZNF180 7733 hgsc.bcm.edu 36 19 49693201 49693201 + Missense_Mutation SNP G G A novel TCGA-04-1365-01A-01W-0490-10 TCGA-04-1365-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1f8ba3a5-b995-4582-b8e4-3f99d042737c efb588f1-26a9-4786-8111-bab6bfecb0fb