Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID CHD6 84181 hgsc.bcm.edu 36 20 39467333 39467333 + Missense_Mutation SNP G G A novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 CNOT3 4849 hgsc.bcm.edu 36 19 59350944 59350944 + Missense_Mutation SNP G G A novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 COL4A4 1286 hgsc.bcm.edu 36 2 227651009 227651009 + Missense_Mutation SNP C C T novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 TPK1 27010 hgsc.bcm.edu 36 7 143951235 143951235 + Missense_Mutation SNP C C T novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 TPO 7173 hgsc.bcm.edu 36 2 1470729 1470729 + Missense_Mutation SNP C C A novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 CNTNAP2 26047 hgsc.bcm.edu 36 7 146449148 146449148 + Missense_Mutation SNP G G A novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 DCC 1630 hgsc.bcm.edu 36 18 48988108 48988108 + Missense_Mutation SNP G G A novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 GBE1 2632 hgsc.bcm.edu 36 3 81722993 81722993 + Nonsense_Mutation SNP G G C novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 NEIL3 55247 hgsc.bcm.edu 36 4 178520448 178520448 + Missense_Mutation SNP G G T novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 RFPL3 10738 hgsc.bcm.edu 36 22 31086703 31086703 + Missense_Mutation SNP C C T novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 SLPI 6590 hgsc.bcm.edu 36 20 43316571 43316571 + Missense_Mutation SNP G G C novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 TP53 7157 hgsc.bcm.edu 36 17 7518310 7518321 + In_Frame_Del DEL GATGGTGGTACA GATGGTGGTACA - novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 GATGGTGGTACA GATGGTGGTACA GATGGTGGTACA - GATGGTGGTACA GATGGTGGTACA Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915 VN1R1 57191 hgsc.bcm.edu 36 19 62659419 62659419 + Missense_Mutation SNP G G C novel TCGA-09-0364-01A-02W-0370-10 TCGA-09-0364-10A-01W-0370-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID a2f211dd-6af1-4fa7-ab0c-9bcdbcfe82b7 0bf88efe-688e-4da8-b2f1-b6c21008e915