Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCG1 9619 hgsc.bcm.edu 36 21 42581464 42581464 + Missense_Mutation SNP G G T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 CACNG3 10368 hgsc.bcm.edu 36 16 24265617 24265617 + Silent SNP G G A novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 COL6A3 1293 hgsc.bcm.edu 36 2 237930743 237930743 + Missense_Mutation SNP C C T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 DCTN1 1639 hgsc.bcm.edu 36 2 74450063 74450063 + Silent SNP G G T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 DDIT3 1649 hgsc.bcm.edu 36 12 56197026 56197026 + Missense_Mutation SNP C C T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 ERN2 10595 hgsc.bcm.edu 36 16 23611111 23611111 + Missense_Mutation SNP A A T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 FABP4 2167 hgsc.bcm.edu 36 8 82553699 82553699 + Missense_Mutation SNP C C T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 FAM47B 170062 hgsc.bcm.edu 36 X 34872017 34872017 + Nonsense_Mutation SNP G G A novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 FASTKD3 79072 hgsc.bcm.edu 36 5 7920785 7920785 + Missense_Mutation SNP A A C novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A A C A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 FBXO47 494188 hgsc.bcm.edu 36 17 34354744 34354744 + Missense_Mutation SNP T T A novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 MYST4 23522 hgsc.bcm.edu 36 10 76451914 76451914 + Silent SNP A A G novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 NR4A2 4929 hgsc.bcm.edu 36 2 156892706 156892706 + Frame_Shift_Del DEL T T - novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 SCN3A 6328 hgsc.bcm.edu 36 2 165655734 165655734 + Silent SNP G G A novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 TNFAIP3 7128 hgsc.bcm.edu 36 6 138237686 138237686 + Missense_Mutation SNP T T G novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 TRIM73 375593 hgsc.bcm.edu 36 7 74870941 74870941 + Missense_Mutation SNP A A C rs3095183 TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 TSHZ3 57616 hgsc.bcm.edu 36 19 36462022 36462022 + Missense_Mutation SNP C C T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 WNT2 7472 hgsc.bcm.edu 36 7 116747964 116747964 + Missense_Mutation SNP C C T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 YIPF2 78992 hgsc.bcm.edu 36 19 10895080 10895080 + Frame_Shift_Del DEL A A - novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 ACACB 32 hgsc.bcm.edu 36 12 108107791 108107791 + Missense_Mutation SNP C C T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 ARMCX2 9823 hgsc.bcm.edu 36 X 100798969 100798969 + Missense_Mutation SNP A A C novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A A C A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 CES7 221223 hgsc.bcm.edu 36 16 54438072 54438072 + Missense_Mutation SNP G G A novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 CHML 1122 hgsc.bcm.edu 36 1 239863810 239863810 + Missense_Mutation SNP G G A novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 CRP 1401 hgsc.bcm.edu 36 1 157950307 157950307 + Missense_Mutation SNP C C T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 FAM111A 63901 hgsc.bcm.edu 36 11 58677422 58677422 + Missense_Mutation SNP C C G novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 GRM8 2918 hgsc.bcm.edu 36 7 125960644 125960644 + Missense_Mutation SNP T T C novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 MTSS1 9788 hgsc.bcm.edu 36 8 125649854 125649854 + Missense_Mutation SNP T T C novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 NCKAP1 10787 hgsc.bcm.edu 36 2 183556332 183556332 + Missense_Mutation SNP C C A novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 NRG1 3084 hgsc.bcm.edu 36 8 32625385 32625385 + Missense_Mutation SNP C C A novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 PBRM1 55193 hgsc.bcm.edu 36 3 52660820 52660820 + Missense_Mutation SNP T T C novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 PDE6C 5146 hgsc.bcm.edu 36 10 95390680 95390680 + Missense_Mutation SNP A A C novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A A C A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 SEC23A 10484 hgsc.bcm.edu 36 14 38584206 38584206 + Missense_Mutation SNP C C T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 TOM1 10043 hgsc.bcm.edu 36 22 34047995 34047995 + Missense_Mutation SNP A A C novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A A C A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 TSHZ2 128553 hgsc.bcm.edu 36 20 51306452 51306452 + Silent SNP G G A novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 ZNF691 51058 hgsc.bcm.edu 36 1 43090048 43090048 + Missense_Mutation SNP C C G novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 DDR1 780 hgsc.bcm.edu 36 6 30964747 30964747 + Missense_Mutation SNP A A G novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 GPR112 139378 hgsc.bcm.edu 36 X 135218642 135218642 + Missense_Mutation SNP A A C novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A A C A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 KANK1 23189 hgsc.bcm.edu 36 9 728303 728303 + Missense_Mutation SNP C C A novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C A A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 MAN1A1 4121 hgsc.bcm.edu 36 6 119567731 119567731 + Missense_Mutation SNP G G C novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 TP53 7157 hgsc.bcm.edu 36 17 7519015 7519015 + Splice_Site SNP C C T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 C C T T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1 ZNF804A 91752 hgsc.bcm.edu 36 2 185439358 185439358 + Missense_Mutation SNP A A T novel TCGA-09-1661-01B-01W-0615-10 TCGA-09-1661-10A-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 79de1282-1bd7-4f35-9b00-777f78c41ebc 0eb5de54-be9e-49fe-9279-cb00e76a8ce1