Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error C11orf42 160298 genome.wustl.edu 36 11 6188787 6188787 + Missense_Mutation SNP G G A novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 11 6188787 6188787 G A SNP C11orf42 NM_173525 human genbank 54_36p +1 predicted missense c.941 p.G314E 1.000 NULL NULL - no_errors TAS2R1 50834 genome.wustl.edu 36 5 9682690 9682690 + Missense_Mutation SNP A A G novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 5 9682690 9682690 A G SNP TAS2R1 NM_019599 human genbank 54_36p -1 reviewed missense c.455 p.V152A 0.000 HMMPfam_TAS2R,superfamily_SSF81321 HMMPfam_TAS2R,superfamily_SSF81321 - no_errors LOC729057 729057 genome.wustl.edu 36 22 14503724 14503724 + RNA SNP C C T novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 22 14503724 14503724 C T SNP LOC729057 XR_042044 human genbank 54_36p +1 model rna NULL NULL 1.000 - - - no_errors KRAS 3845 genome.wustl.edu 36 12 25289551 25289551 + Missense_Mutation SNP C C A novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 12 25289551 25289551 C A SNP KRAS NM_033360 human genbank 54_36p -1 reviewed missense c.35 p.G12V 1.000 HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176 HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176 - no_errors TMEM222 84065 genome.wustl.edu 36 1 27534517 27534517 + Silent SNP C T T novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 1 27534517 27534517 C T SNP TMEM222 NM_032125 human genbank 54_36p +1 validated silent c.600 p.T200 0.267 NULL HMMPfam_DUF778 - no_errors NCR3 259197 genome.wustl.edu 36 6 31665635 31665635 + Missense_Mutation SNP G G C novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 6 31665635 31665635 G C SNP NCR3 NM_147130 human genbank 54_36p -1 validated missense c.291 p.D97E 0.037 superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409 superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409 - no_errors DMD 1756 genome.wustl.edu 36 X 31803341 31803341 + Missense_Mutation SNP T T A novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c X 31803341 31803341 T A SNP DMD NM_004006 human genbank 54_36p -1 reviewed missense c.6983 p.K2328I 0.956 superfamily_Spectrin repeat superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin - no_errors DLGAP3 58512 genome.wustl.edu 36 1 35143338 35143338 + Silent SNP C C T novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 1 35143338 35143338 C T SNP DLGAP3 NM_001080418 human genbank 54_36p -1 provisional silent c.234 p.A78 0.414 NULL HMMPfam_GKAP - no_errors ZFP82 284406 genome.wustl.edu 36 19 41576919 41576919 + Missense_Mutation SNP T C C novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 19 41576919 41576919 T C SNP ZFP82 ENST00000392171 human ensembl 54_36p -1 known missense c.163 p.T55A 0.000 HMMSmart_KRAB superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors DOK5 55816 genome.wustl.edu 36 20 52604926 52604926 + Silent SNP T T C novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 20 52604926 52604926 T C SNP DOK5 NM_018431 human genbank 54_36p +1 reviewed silent c.114 p.G38 0.965 superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233 superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00310,HMMPfam_IRS - no_errors JARID1C 8242 genome.wustl.edu 36 X 53238918 53238918 + Silent SNP G G A novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c X 53238918 53238918 G A SNP JARID1C NM_004187 human genbank 54_36p -1 reviewed silent c.4639 p.L1547 0.012 NULL HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1 - no_errors RB1CC1 9821 genome.wustl.edu 36 8 53732846 53732846 + Missense_Mutation SNP G G A novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 8 53732846 53732846 G A SNP RB1CC1 NM_014781 human genbank 54_36p -1 validated missense c.2096 p.T699M 1.000 NULL superfamily_SSF54236,HMMPfam_ATG11 - no_errors MAGT1 84061 genome.wustl.edu 36 X 76999027 76999027 + Splice_Site SNP C C A novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c X 76999027 76999027 C A SNP MAGT1 NM_032121 human genbank 54_36p -1 validated splice_site c.532-1 e5-1 1.000 - - - no_errors MUC17 140453 genome.wustl.edu 36 7 100471112 100471112 + Missense_Mutation SNP C C T novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 7 100471112 100471112 C T SNP MUC17 NM_001040105 human genbank 54_36p +1 provisional missense c.9695 p.T3232M 0.013 NULL superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA - no_errors KCNH7 90134 genome.wustl.edu 36 2 162944669 162944669 + Missense_Mutation SNP C C T novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 2 162944669 162944669 C T SNP KCNH7 NM_033272 human genbank 54_36p -1 reviewed missense c.3071 p.S1024N 1.000 NULL superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding - no_errors PDE10A 10846 genome.wustl.edu 36 6 165749717 165749717 + Silent SNP T T C novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 6 165749717 165749717 T C SNP PDE10A NM_006661 human genbank 54_36p -1 validated silent c.1011 p.T337 0.995 superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065 superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I - no_errors COL4A4 1286 genome.wustl.edu 36 2 227623028 227623028 + Nonsense_Mutation SNP C C A novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 2 227623028 227623028 C A SNP COL4A4 NM_000092 human genbank 54_36p -1 reviewed nonsense c.3214 p.G1072* 1.000 HMMPfam_Collagen HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like - no_errors MT-CYB 4519 genome.wustl.edu 36 MT 15644 15661 + In_Frame_Del DEL CATCCTAGCAATAATCCC CATCCTAGCAATAATCCC - novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 CATCCTAGCAATAATCCC CATCCTAGCAATAATCCC Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c MT 15644 15661 CATCCTAGCAATAATCCC - DEL MT-CYB ENST00000361789 human ensembl 54_36p +1 known in_frame_del c.897_914 p.AMIPIL302in_frame_del NULL HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C superfamily_Transmembr_di-haem_cytochrome,HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C (deletion:cds_exon[14748,15882]) no_stop_codon:bad_bp_length_for_coding_region NF1 4763 genome.wustl.edu 36 17 26510186 26510187 + Frame_Shift_Ins INS - - T novel unknown TCGA-09-1664-01A-01W-0639-09 TCGA-09-1664-11A-01W-0639-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 8364585f-d532-4c26-9e0e-22cbfaeaf683 396c481e-d6ec-456f-a9dc-5740e9bfb22c 17 26510186 26510187 - T INS NF1 NM_001042492 human genbank 54_36p +1 reviewed frame_shift_ins c.237_238 p.Y79fs 0.988:1.000 NULL HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516 - no_errors