Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error CSDE1 7812 genome.wustl.edu 36 1 115083932 115083932 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 1 115083932 115083932 T G SNP CSDE1 NM_001007553 human genbank 54_36p -1 validated missense c.103 p.T35P 1 NULL - - no_errors PRPF3 9129 genome.wustl.edu 36 1 148574237 148574237 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 1 148574237 148574237 C A SNP PRPF3 NM_004698 human genbank 54_36p 1 reviewed missense c.936 p.D312E 1 NULL - - no_errors FCRL5 83416 genome.wustl.edu 36 1 155764297 155764297 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 1 155764297 155764297 C T SNP FCRL5 NM_031281 human genbank 54_36p -1 validated missense c.1694 p.R565H 0.75 NULL HMMPfam_ig;superfamily_Immunoglobulin - no_errors SPTA1 6708 genome.wustl.edu 36 1 156873163 156873163 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 1 156873163 156873163 T C SNP SPTA1 NM_003126 human genbank 54_36p -1 reviewed missense c.5202 p.I1734M 0.32 NULL - - no_errors NBPF3 84224 genome.wustl.edu 36 1 21670841 21670841 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 1 21670841 21670841 C G SNP NBPF3 NM_032264 human genbank 54_36p 1 validated missense c.639 p.H213Q NULL - - no_errors OR4F5 79501 genome.wustl.edu 36 1 59401 59401 + Missense_Mutation SNP G A A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 1 59401 59401 G A SNP OR4F5 NM_001005484 human genbank 54_36p 1 provisional missense c.448 p.V150M NULL - - no_errors PNLIP 5406 genome.wustl.edu 36 10 118308707 118308707 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 10 118308707 118308707 G A SNP PNLIP NM_000936 human genbank 54_36p 1 reviewed missense c.982 p.A328T 1 HMMPfam_Lipase HMMPfam_PLAT;HMMPfam_Lipase;superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain);superfamily_alpha/beta-Hydrolases - no_errors LOC387646 387646 genome.wustl.edu 36 10 27579509 27579509 + RNA SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 10 27579509 27579509 G A SNP LOC387646 NR_003525 human genbank 54_36p -1 provisional rna NULL NULL 0.002 - - - pseudogene ANKRD30A 91074 genome.wustl.edu 36 10 37526222 37526222 + Silent SNP C C T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 10 37526222 37526222 C T SNP ANKRD30A NM_052997 human genbank 54_36p 1 validated silent c.2454 p.P818 0.02 NULL HMMPfam_Ank;superfamily_Ankyrin repeat - no_errors RNLS 55328 genome.wustl.edu 36 10 90112411 90112411 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 10 90112411 90112411 C G SNP C10orf59 NM_001031709 human genbank 54_36p -1 provisional missense c.578 p.R193P 1 NULL HMMPfam_FAD_binding_3;superfamily_FAD/NAD(P)-binding domain - no_errors ENTPD1 953 genome.wustl.edu 36 10 97589521 97589521 + Silent SNP C C T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 10 97589521 97589521 C T SNP ENTPD1 NM_001098175 human genbank 54_36p 1 validated silent c.249 p.G83 1 NULL - - no_errors POLD3 10714 genome.wustl.edu 36 11 74024916 74024916 + Missense_Mutation SNP A A C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 11 74024916 74024916 A C SNP POLD3 NM_006591 human genbank 54_36p 1 validated missense c.1146 p.K382N 1 NULL - - no_errors GRIN2B 2904 genome.wustl.edu 36 12 13659413 13659413 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 12 13659413 13659413 C T SNP GRIN2B NM_000834 human genbank 54_36p -1 reviewed missense c.1556 p.R519Q 1 NULL HMMPfam_Lig_chan;superfamily_Periplasmic binding protein-like I;superfamily_Periplasmic binding protein-like II;superfamily_Voltage-gated potassium channels - no_errors ITPR2 3709 genome.wustl.edu 36 12 26876940 26876940 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 12 26876940 26876940 G C SNP ITPR2 NM_002223 human genbank 54_36p -1 validated missense c.42 p.I14M 1 NULL - - no_errors KRT1 3848 genome.wustl.edu 36 12 51358657 51358657 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 12 51358657 51358657 C T SNP KRT1 NM_006121 human genbank 54_36p -1 reviewed missense c.742 p.D248N 0.52 HMMPfam_Filament HMMPfam_Filament;superfamily_Prefoldin - no_errors LOC400061 400061 genome.wustl.edu 36 12 93439105 93439105 + RNA SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 12 93439105 93439105 G A SNP LOC400061 XR_016608 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene MYO16 23026 genome.wustl.edu 36 13 108575501 108575501 + Silent SNP A A G novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 13 108575501 108575501 A G SNP MYO16 NM_015011 human genbank 54_36p 1 validated silent c.3510 p.R1170 1 NULL HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors LCP1 3936 genome.wustl.edu 36 13 45614517 45614517 + Silent SNP C C T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 13 45614517 45614517 C T SNP LCP1 NM_002298 human genbank 54_36p -1 reviewed silent c.1413 p.A471 1 HMMPfam_CH HMMPfam_CH;HMMPfam_efhand;superfamily_EF-hand;superfamily_Calponin-homology domain CH-domain - no_errors NYNRIN 57523 genome.wustl.edu 36 14 23947546 23947546 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 14 23947546 23947546 C T SNP KIAA1305 NM_025081 human genbank 54_36p 1 validated missense c.830 p.P277L 0.47 NULL - - no_errors PRTG 283659 genome.wustl.edu 36 15 53820119 53820119 + Silent SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 15 53820119 53820119 G A SNP PRTG NM_173814 human genbank 54_36p -1 validated silent c.150 p.V50 1 NULL - - no_errors WHAMM 123720 genome.wustl.edu 36 15 81296867 81296867 + Nonsense_Mutation SNP G G T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 15 81296867 81296867 G T SNP WHAMM NM_001080435 human genbank 54_36p 1 provisional nonsense c.2104 p.E702* NULL - - no_errors WHAMM 123720 genome.wustl.edu 36 15 81299246 81299246 + Silent SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 15 81299246 81299246 G A SNP WHAMM NM_001080435 human genbank 54_36p 1 provisional silent c.2334 p.E778 1 NULL - - no_errors SLC7A6OS 84138 genome.wustl.edu 36 16 66895521 66895521 + Missense_Mutation SNP T C C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 16 66895521 66895521 T C SNP SLC7A6OS NM_032178 human genbank 54_36p -1 provisional missense c.587 p.Y196C 1 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7519015 7519015 + Splice_Site SNP C G G novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 17 7519015 7519015 C G SNP TP53 NM_000546 human genbank 54_36p -1 reviewed splice_site c.560-1 e5-1 0.38 - - - no_errors MYH10 4628 genome.wustl.edu 36 17 8337021 8337021 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 17 8337021 8337021 T C SNP MYH10 NM_005964 human genbank 54_36p -1 validated missense c.4163 p.E1388G 1 HMMPfam_Myosin_tail_1 HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Myosin S1 fragment N-terminal domain;superfamily_Prefoldin;superfamily_UBA-like;superfamily_HR1 repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors ANKRD30B 374860 genome.wustl.edu 36 18 14772535 14772535 + Nonsense_Mutation SNP G G T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 18 14772535 14772535 G T SNP ANKRD30B ENST00000358984 human ensembl 54_36p 1 known nonsense c.1492 p.E498* NULL - - no_errors DSC1 1823 genome.wustl.edu 36 18 26968696 26968696 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 18 26968696 26968696 G T SNP DSC1 NM_024421 human genbank 54_36p -1 reviewed missense c.1713 p.N571K 0.88 NULL HMMPfam_Cadherin;HMMPfam_Cadherin_pro;superfamily_Cadherin-like - no_errors RTN2 6253 genome.wustl.edu 36 19 50684493 50684493 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 19 50684493 50684493 G A SNP RTN2 NM_005619 human genbank 54_36p -1 reviewed missense c.1192 p.R398C 1 HMMPfam_Reticulon HMMPfam_Reticulon - no_errors OR7G3 390883 genome.wustl.edu 36 19 9098569 9098569 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 19 9098569 9098569 C A SNP OR7G3 NM_001001958 human genbank 54_36p -1 provisional missense c.58 p.D20Y NULL - - no_errors TTN 7273 genome.wustl.edu 36 2 179105686 179105686 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 2 179105686 179105686 T C SNP TTN NM_133378 human genbank 54_36p -1 reviewed missense c.96197 p.Q32066R 0.99 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region COL3A1 1281 genome.wustl.edu 36 2 189581976 189581976 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 2 189581976 189581976 G A SNP COL3A1 NM_000090 human genbank 54_36p 1 reviewed missense c.3607 p.A1203T 0.29 NULL COLFI;HMMPfam_COLFI;VWC;HMMPfam_VWC;Collagen;HMMPfam_Collagen;Fibrinogen C-terminal domain-like;superfamily_Fibrinogen C-terminal domain-like - no_errors CYP1B1 1545 genome.wustl.edu 36 2 38151642 38151642 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 2 38151642 38151642 G C SNP CYP1B1 NM_000104 human genbank 54_36p -1 reviewed missense c.1359 p.N453K 1 HMMPfam_p450 HMMPfam_p450;superfamily_Cytochrome P450 - no_errors BTBD3 22903 genome.wustl.edu 36 20 11852279 11852279 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 20 11852279 11852279 G A SNP BTBD3 NM_014962 human genbank 54_36p 1 validated missense c.1534 p.G512R 1 NULL - - no_errors PHACTR3 116154 genome.wustl.edu 36 20 57751719 57751719 + Splice_Site SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 20 57751719 57751719 G A SNP PHACTR3 NM_080672 human genbank 54_36p 1 reviewed splice_site c.280+1 e2+1 1 - - - no_errors SON 6651 genome.wustl.edu 36 21 33848290 33848290 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 21 33848290 33848290 T A SNP SON NM_138927 human genbank 54_36p 1 reviewed missense c.4883 p.V1628D 1 NULL HMMPfam_G-patch;HMMPfam_dsrm;superfamily_WD40 repeat-like;superfamily_dsRNA-binding domain-like - no_errors OR5H2 79310 genome.wustl.edu 36 3 99484630 99484630 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 3 99484630 99484630 G T SNP OR5H2 NM_001005482 human genbank 54_36p 1 provisional missense c.209 p.S70I NULL - - no_errors SPRY1 10252 genome.wustl.edu 36 4 124542801 124542801 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 4 124542801 124542801 T C SNP SPRY1 NM_005841 human genbank 54_36p 1 validated missense c.605 p.L202S 0.96 NULL - - no_errors CLCN3 1182 genome.wustl.edu 36 4 170871004 170871004 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 4 170871004 170871004 C G SNP CLCN3 NM_173872 human genbank 54_36p 1 validated missense c.2349 p.C783W 1 HMMPfam_CBS HMMPfam_CBS;HMMPfam_Voltage_CLC;superfamily_CBS-domain;superfamily_Clc chloride channel - no_errors GABRA2 2555 genome.wustl.edu 36 4 45947281 45947281 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 4 45947281 45947281 G C SNP GABRA2 NM_000807 human genbank 54_36p -1 reviewed missense c.1157 p.T386S 1 HMMPfam_Neur_chan_memb HMMPfam_Neur_chan_memb;HMMPfam_Neur_chan_LBD;superfamily_Nicotinic receptor ligand binding domain-like;superfamily_Neurotransmitter-gated ion-channel transmembrane pore - no_errors UGT2B10 7365 genome.wustl.edu 36 4 69727856 69727856 + Splice_Site SNP G G C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 4 69727856 69727856 G C SNP UGT2B10 NM_001075 human genbank 54_36p 1 validated splice_site c.1307+1 e5+1 1 - - - no_errors PCDHA9 9752 genome.wustl.edu 36 5 140208366 140208366 + Silent SNP C C T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 5 140208366 140208366 C T SNP PCDHA9 NM_031857 human genbank 54_36p 1 reviewed silent c.102 p.S34 0.22 NULL - - no_errors PCDHGA12 26025 genome.wustl.edu 36 5 140790893 140790893 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 5 140790893 140790893 A G SNP PCDHGA12 NM_003735 human genbank 54_36p 1 reviewed missense c.383 p.D128G 1 NULL - - no_errors HTR1A 3350 genome.wustl.edu 36 5 63292623 63292623 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 5 63292623 63292623 C T SNP HTR1A NM_000524 human genbank 54_36p -1 validated missense c.680 p.R227H 1 NULL - - no_errors ROS1 6098 genome.wustl.edu 36 6 117738055 117738055 + Missense_Mutation SNP C T T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 6 117738055 117738055 C T SNP ROS1 NM_002944 human genbank 54_36p -1 reviewed missense c.6316 p.A2106T 0.96 HMMPfam_Pkinase_Tyr Pkinase_Tyr;HMMPfam_Pkinase_Tyr;fn3;HMMPfam_fn3;Fibronectin type III;superfamily_Fibronectin type III;Protein kinase-like (PK-like);superfamily_Protein kinase-like (PK-like);YWTD domain;superfamily_YWTD domain - no_errors OR5V1 81696 genome.wustl.edu 36 6 29431442 29431442 + Silent SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 6 29431442 29431442 G A SNP OR5V1 NM_030876 human genbank 54_36p -1 validated silent c.510 p.G170 NULL - - no_errors AKR1B1 231 genome.wustl.edu 36 7 133782646 133782646 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 7 133782646 133782646 T C SNP AKR1B1 NM_001628 human genbank 54_36p -1 reviewed missense c.769 p.N257D 1 HMMPfam_Aldo_ket_red HMMPfam_Aldo_ket_red;superfamily_NAD(P)-linked oxidoreductase - no_errors MLL3 58508 genome.wustl.edu 36 7 151482139 151482139 + Silent SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 7 151482139 151482139 G A SNP MLL3 NM_170606 human genbank 54_36p -1 reviewed silent c.12165 p.I4055 1 NULL AT_hook;HMMPfam_AT_hook;HMG_box;HMMPfam_HMG_box;SET;HMMPfam_SET;PHD;HMMPfam_PHD;FYRN;HMMPfam_FYRN;FYRC;HMMPfam_FYRC - no_errors C8orf45 157777 genome.wustl.edu 36 8 67952151 67952151 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 8 67952151 67952151 T G SNP C8orf45 NM_173518 human genbank 54_36p 1 validated missense c.284 p.L95R 1 NULL - - no_errors DAB2IP 153090 genome.wustl.edu 36 9 123561076 123561076 + Nonsense_Mutation SNP C C T novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 9 123561076 123561076 C T SNP DAB2IP NM_032552 human genbank 54_36p 1 validated nonsense c.511 p.R171* 1 NULL - - no_errors ZFX 7543 genome.wustl.edu 36 X 24136297 24136297 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0935-01A-03W-0421-09 TCGA-10-0935-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx af0edbf4-9d90-4373-a9ce-0875ebbe1d04 3cd33d1c-0b1d-4346-840e-ba14b49f52e7 X 24136297 24136297 G A SNP ZFX NM_003410 human genbank 54_36p 1 validated missense c.982 p.V328I 0.994 NULL - - no_errors