Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCF1 23 hgsc.bcm.edu 36 6 30661705 30661705 + Missense_Mutation SNP G G C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 ADAM8 101 hgsc.bcm.edu 36 10 134926668 134926669 + Frame_Shift_Ins INS - - T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 ARID1B 57492 hgsc.bcm.edu 36 6 157569688 157569689 + Frame_Shift_Ins INS - - T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 ARID1B 57492 hgsc.bcm.edu 36 6 157569693 157569693 + Missense_Mutation SNP A A C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 ASTE1 28990 hgsc.bcm.edu 36 3 132215737 132215737 + Frame_Shift_Del DEL T T - novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 CCNA1 8900 hgsc.bcm.edu 36 13 35913329 35913329 + Silent SNP T T A novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 CNTN6 27255 hgsc.bcm.edu 36 3 1399790 1399790 + Missense_Mutation SNP A A T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 EGFR 1956 hgsc.bcm.edu 36 7 55226952 55226952 + Missense_Mutation SNP C C T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 EP400 57634 hgsc.bcm.edu 36 12 131068798 131068798 + Missense_Mutation SNP C C T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 KLF15 28999 hgsc.bcm.edu 36 3 127554211 127554211 + Missense_Mutation SNP G C C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 NOS3 4846 hgsc.bcm.edu 36 7 150330273 150330273 + Missense_Mutation SNP T T C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 OR52N5 390075 hgsc.bcm.edu 36 11 5756228 5756228 + Frame_Shift_Del DEL A A - novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 PI4K2A 55361 hgsc.bcm.edu 36 10 99406689 99406689 + Missense_Mutation SNP T T C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 PILRB 29990 hgsc.bcm.edu 36 7 99795065 99795067 + In_Frame_Del DEL CCT CCT - rs5886120 TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 CCT CCT . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 PRSS35 167681 hgsc.bcm.edu 36 6 84291068 84291068 + Missense_Mutation SNP G G A novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 PTCH1 5727 hgsc.bcm.edu 36 9 97279757 97279757 + Missense_Mutation SNP G G C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 SLC8A1 6546 hgsc.bcm.edu 36 2 40245569 40245569 + Frame_Shift_Del DEL C C - novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 SPEG 10290 hgsc.bcm.edu 36 2 220024117 220024117 + Missense_Mutation SNP C C A novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 TBX1 6899 hgsc.bcm.edu 36 22 18132518 18132518 + Missense_Mutation SNP T T C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 TXNDC3 51314 hgsc.bcm.edu 36 7 37873982 37873982 + Missense_Mutation SNP G G A novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 ULK4 54986 hgsc.bcm.edu 36 3 41835989 41835989 + Frame_Shift_Del DEL T T - novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 ZRANB1 54764 hgsc.bcm.edu 36 10 126663551 126663551 + Frame_Shift_Del DEL A A - novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 BAT2L 84726 hgsc.bcm.edu 36 9 133348587 133348587 + Silent SNP A A T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 A A A T A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 DCHS2 54798 hgsc.bcm.edu 36 4 155375228 155375228 + Missense_Mutation SNP C C G novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C C G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 FLJ43860 389690 hgsc.bcm.edu 36 8 142545775 142545775 + Missense_Mutation SNP G G T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 HPS3 84343 hgsc.bcm.edu 36 3 150351082 150351082 + Silent SNP C C T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 IL20RA 53832 hgsc.bcm.edu 36 6 137364735 137364735 + Missense_Mutation SNP C C T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 NMUR2 56923 hgsc.bcm.edu 36 5 151764254 151764254 + Missense_Mutation SNP G G A novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 OR9G4 283189 hgsc.bcm.edu 36 11 56267121 56267121 + Missense_Mutation SNP C C T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 SHISA3 152573 hgsc.bcm.edu 36 4 42097904 42097904 + Missense_Mutation SNP G G C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 G G G C G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 SLC26A5 375611 hgsc.bcm.edu 36 7 102806180 102806180 + Silent SNP G G A novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 ST6GAL2 84620 hgsc.bcm.edu 36 2 106826760 106826760 + Missense_Mutation SNP C C T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 ASCC3 10973 hgsc.bcm.edu 36 6 101072612 101072612 + Missense_Mutation SNP T T C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 T T T C T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 CHD4 1108 hgsc.bcm.edu 36 12 6580815 6580815 + Missense_Mutation SNP C C A novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 DIP2B 57609 hgsc.bcm.edu 36 12 49384188 49384188 + Splice_Site SNP A A T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 A A A T A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 SIPA1L2 57568 hgsc.bcm.edu 36 1 230647919 230647919 + Missense_Mutation SNP C C T novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 SLC12A6 9990 hgsc.bcm.edu 36 15 32320198 32320198 + Missense_Mutation SNP C C A novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 UBR4 23352 hgsc.bcm.edu 36 1 19391336 19391336 + Nonsense_Mutation SNP G G A novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 RICS 9743 hgsc.bcm.edu 36 11 128361112 128361112 + Missense_Mutation SNP A C C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 A A C C A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2 TTN 7273 hgsc.bcm.edu 36 2 179178103 179178103 + Missense_Mutation SNP T T C novel TCGA-13-0717-01A-01W-0370-10 TCGA-13-0717-10B-01W-0370-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 043708a3-ae61-4c62-b619-74715f26a2b6 0115b2b1-7489-4b65-8db7-47f8e6b313e2