Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
COL11A1	1301	genome.wustl.edu	36	1	103119897	103119897	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	103119897	103119897	A	T	SNP	COL11A1	NM_080629	human	genbank	54_36p	-1	reviewed	missense	c.5020	p.S1674T	1	HMMPfam_COLFI	HMMPfam_COLFI;HMMPfam_Collagen;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_Fibrinogen C-terminal domain-like	-	no_errors
ZNF697	90874	genome.wustl.edu	36	1	119970088	119970088	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	119970088	119970088	C	T	SNP	ZNF697	NM_001080470	human	genbank	54_36p	-1	provisional	silent	c.159	p.P53		NULL	-	-	no_errors
CGN	57530	genome.wustl.edu	36	1	149774954	149774954	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	149774954	149774954	G	A	SNP	CGN	NM_020770	human	genbank	54_36p	1	validated	silent	c.3153	p.E1051	0.97	NULL	-	-	no_errors
LCE3E	353145	genome.wustl.edu	36	1	150805082	150805082	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	150805082	150805082	C	T	SNP	LCE3E	NM_178435	human	genbank	54_36p	-1	validated	missense	c.227	p.G76D	0.43	NULL	-	-	no_errors
CELA2B	51032	genome.wustl.edu	36	1	15680218	15680218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	15680218	15680218	C	G	SNP	ELA2B	NM_015849	human	genbank	54_36p	1	reviewed	missense	c.168	p.H56Q	1	NULL	-	-	no_errors
FCRL6	343413	genome.wustl.edu	36	1	158051862	158051862	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	158051862	158051862	G	C	SNP	FCRL6	NM_001004310	human	genbank	54_36p	1	validated	missense	c.1168	p.V390L		NULL	-	-	no_errors
F5	2153	genome.wustl.edu	36	1	167751388	167751388	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	167751388	167751388	T	C	SNP	F5	NM_000130	human	genbank	54_36p	-1	reviewed	missense	c.6446	p.Y2149C	1	NULL	-	-	no_errors
FAM5B	57795	genome.wustl.edu	36	1	175517201	175517201	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	175517201	175517201	G	A	SNP	FAM5B	NM_021165	human	genbank	54_36p	1	provisional	missense	c.2266	p.V756M	1	NULL	HMMPfam_MACPF	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	209258748	209258748	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	209258748	209258748	C	A	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	missense	c.1032	p.Q344H	1	NULL	-	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214210718	214210718	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	214210718	214210718	A	G	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.6829	p.Y2277H	1	NULL	-	-	no_errors
TMEM63A	9725	genome.wustl.edu	36	1	224101408	224101408	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	224101408	224101408	G	A	SNP	TMEM63A	NM_014698	human	genbank	54_36p	-1	provisional	nonsense	c.2380	p.Q794*	0.02	NULL	-	-	no_errors
WNT9A	7483	genome.wustl.edu	36	1	226178521	226178521	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	226178521	226178521	G	A	SNP	WNT9A	NM_003395	human	genbank	54_36p	-1	validated	missense	c.556	p.R186W	1	HMMPfam_wnt	HMMPfam_wnt	-	no_errors
SEPN1	57190	genome.wustl.edu	36	1	26007750	26007750	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	26007750	26007750	T	A	SNP	SEPN1	ENST00000354177	human	ensembl	54_36p	1	known	silent	c.528	p.L176	0.69	NULL	-	-	no_errors
ARID1A	8289	genome.wustl.edu	36	1	26974783	26974783	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	26974783	26974783	C	T	SNP	ARID1A	NM_006015	human	genbank	54_36p	1	reviewed	nonsense	c.5122	p.Q1708*	1	NULL	-	-	no_errors
PCSK9	255738	genome.wustl.edu	36	1	55296327	55296327	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	55296327	55296327	C	A	SNP	PCSK9	NM_174936	human	genbank	54_36p	1	reviewed	missense	c.1211	p.P404Q	0.51	NULL	-	-	no_errors
NOC2L	26155	genome.wustl.edu	36	1	871755	871755	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	871755	871755	T	G	SNP	NOC2L	NM_015658	human	genbank	54_36p	-1	validated	missense	c.1693	p.N565H	1	NULL	-	-	no_errors
CCDC18	343099	genome.wustl.edu	36	1	93450248	93450248	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	1	93450248	93450248	T	G	SNP	CCDC18	NM_206886	human	genbank	54_36p	1	validated	missense	c.1691	p.I564S	1	NULL	-	-	no_errors
CCDC147	159686	genome.wustl.edu	36	10	106108143	106108143	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	10	106108143	106108143	G	C	SNP	CCDC147	NM_001008723	human	genbank	54_36p	1	validated	missense	c.64	p.D22H	1	NULL	-	-	no_errors
TCF7L2	6934	genome.wustl.edu	36	10	114839151	114839151	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	10	114839151	114839151	C	G	SNP	TCF7L2	ENST00000352065	human	ensembl	54_36p	1	known	missense	c.489	p.S163R	1	HMMPfam_CTNNB1_binding	HMMPfam_HMG_box;superfamily_HMG-box;HMMPfam_CTNNB1_binding	-	no_errors
BAG3	9531	genome.wustl.edu	36	10	121422103	121422103	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	10	121422103	121422103	C	T	SNP	BAG3	NM_004281	human	genbank	54_36p	1	reviewed	missense	c.854	p.T285M	0.75	NULL	HMMPfam_WW;superfamily_WW domain;HMMPfam_BAG;superfamily_BAG domain	-	no_errors
PTER	9317	genome.wustl.edu	36	10	16566430	16566430	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	10	16566430	16566430	T	C	SNP	PTER	NM_001001484	human	genbank	54_36p	1	validated	missense	c.41	p.L14P	0.01	NULL	-	-	no_errors
ARHGAP21	57584	genome.wustl.edu	36	10	24948443	24948443	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	10	24948443	24948443	G	T	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	missense	c.2384	p.P795Q	0.89	NULL	HMMPfam_RhoGAP;HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_PH;superfamily_GTPase activation domain GAP;superfamily_PH domain-like	-	no_errors
PTCHD3	374308	genome.wustl.edu	36	10	27727657	27727657	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	10	27727657	27727657	C	G	SNP	PTCHD3	NM_001034842	human	genbank	54_36p	-1	validated	missense	c.1876	p.G626R	0.99	NULL	-	-	no_errors
ZNF488	118738	genome.wustl.edu	36	10	47991112	47991112	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	10	47991112	47991112	C	A	SNP	ZNF488	NM_153034	human	genbank	54_36p	1	provisional	missense	c.574	p.L192M	0.92	NULL	-	-	no_errors
CYP2C19	1557	genome.wustl.edu	36	10	96602522	96602522	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	10	96602522	96602522	T	A	SNP	CYP2C19	NM_000769	human	genbank	54_36p	1	reviewed	missense	c.1334	p.L445Q	1	HMMPfam_p450	HMMPfam_p450;superfamily_Cytochrome P450	-	no_errors
ZNF202	7753	genome.wustl.edu	36	11	123102703	123102703	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	123102703	123102703	T	C	SNP	ZNF202	NM_003455	human	genbank	54_36p	-1	validated	missense	c.1159	p.T387A	0.16	NULL	HMMPfam_KRAB;HMMPfam_SCAN;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers	-	no_errors
VSIG2	23584	genome.wustl.edu	36	11	124123564	124123564	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	124123564	124123564	G	A	SNP	VSIG2	NM_014312	human	genbank	54_36p	-1	provisional	silent	c.783	p.F261	0.98	NULL	-	-	no_errors
ST14	6768	genome.wustl.edu	36	11	129575215	129575215	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	129575215	129575215	A	C	SNP	ST14	NM_021978	human	genbank	54_36p	1	reviewed	missense	c.1967	p.H656P	1	HMMPfam_Trypsin	HMMPfam_SEA;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_Trypsin;HMMPfam_Ldl_recept_a;superfamily_Trypsin-like serine proteases;superfamily_LDL receptor-like module;superfamily_SEA domain	-	no_errors
PAMR1	25891	genome.wustl.edu	36	11	35410599	35410599	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	35410599	35410599	G	A	SNP	DKFZP586H2123	NM_015430	human	genbank	54_36p	-1	validated	missense	c.2095	p.R699C	0.08	HMMPfam_Trypsin	HMMPfam_Sushi;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_Trypsin;HMMPfam_EGF;superfamily_Trypsin-like serine proteases;superfamily_EGF/Laminin;superfamily_Complement control module/SCR domain	-	no_errors
TTC17	55761	genome.wustl.edu	36	11	43422283	43422283	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	43422283	43422283	C	G	SNP	TTC17	NM_018259	human	genbank	54_36p	1	provisional	nonsense	c.2613	p.Y871*	0.95	NULL	-	-	no_errors
PSMC3	5702	genome.wustl.edu	36	11	47402214	47402214	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	47402214	47402214	G	A	SNP	PSMC3	NM_002804	human	genbank	54_36p	-1	reviewed	nonsense	c.550	p.Q184*	1	NULL	-	-	no_errors
LOC340970	340970	genome.wustl.edu	36	11	48963952	48963952	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	48963952	48963952	A	G	SNP	LOC340970	XR_042351	human	genbank	54_36p	-1	model	rna	NULL	NULL		-	-	-	pseudogene
OR5D18	219438	genome.wustl.edu	36	11	55343867	55343867	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	55343867	55343867	T	G	SNP	OR5D18	NM_001001952	human	genbank	54_36p	1	provisional	missense	c.186	p.F62L	0.96	NULL	-	-	no_errors
LOC643680	643680	genome.wustl.edu	36	11	59753973	59753973	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	59753973	59753973	G	A	SNP	LOC643680	XM_931901	human	genbank	54_36p	-1	model	missense	c.59	p.P20L	0.47	NULL	-	-	no_errors
STIP1	10963	genome.wustl.edu	36	11	63718248	63718248	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	63718248	63718248	A	G	SNP	STIP1	NM_006819	human	genbank	54_36p	1	validated	silent	c.231	p.R77	0.77	NULL	-	-	no_errors
RELA	5970	genome.wustl.edu	36	11	65184219	65184219	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	65184219	65184219	C	G	SNP	RELA	NM_021975	human	genbank	54_36p	-1	validated	missense	c.379	p.E127Q	1	HMMPfam_RHD	TIG;HMMPfam_TIG;RHD;HMMPfam_RHD	-	no_errors
RBM4	5936	genome.wustl.edu	36	11	66168159	66168159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	66168159	66168159	G	A	SNP	RBM4	NM_002896	human	genbank	54_36p	1	validated	missense	c.1075	p.A359T	1	NULL	-	-	no_errors
KDM2A	22992	genome.wustl.edu	36	11	66778962	66778962	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	66778962	66778962	C	T	SNP	FBXL11	NM_012308	human	genbank	54_36p	1	reviewed	missense	c.3349	p.R1117C	1	NULL	HMMPfam_LRR_1;HMMPfam_F-box;HMMPfam_zf-CXXC;superfamily_FYVE/PHD zinc finger;HMMPfam_JmjC;superfamily_Clavaminate synthase-like;superfamily_RNI-like	-	no_errors
SUV420H1	51111	genome.wustl.edu	36	11	67682106	67682106	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	67682106	67682106	C	A	SNP	SUV420H1	NM_017635	human	genbank	54_36p	-1	reviewed	missense	c.2283	p.K761N	1	NULL	HMMPfam_SET;superfamily_SET domain	-	no_errors
CREBZF	58487	genome.wustl.edu	36	11	85052903	85052903	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	85052903	85052903	C	A	SNP	CREBZF	NM_001039618	human	genbank	54_36p	-1	validated	missense	c.665	p.R222L	1	NULL	-	-	no_errors
GPR83	10888	genome.wustl.edu	36	11	93753026	93753026	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	11	93753026	93753026	G	T	SNP	GPR83	NM_016540	human	genbank	54_36p	-1	validated	silent	c.1209	p.T403	0.93	NULL	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
SSH1	54434	genome.wustl.edu	36	12	107717052	107717052	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	107717052	107717052	G	A	SNP	SSH1	NM_018984	human	genbank	54_36p	-1	provisional	missense	c.1202	p.A401V	0.98	NULL	-	-	no_errors
NOS1	4842	genome.wustl.edu	36	12	116178198	116178198	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	116178198	116178198	G	T	SNP	NOS1	ENST00000338101	human	ensembl	54_36p	-1	known	silent	c.2559	p.P853	1	NULL	-	-	no_errors
CCDC64	92558	genome.wustl.edu	36	12	119003073	119003073	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	119003073	119003073	G	C	SNP	CCDC64	NM_207311	human	genbank	54_36p	1	validated	splice_site	c.1309-1	e7-1	1	-	-	-	no_errors
CCDC62	84660	genome.wustl.edu	36	12	121856670	121856670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	121856670	121856670	G	A	SNP	CCDC62	NM_201435	human	genbank	54_36p	1	validated	missense	c.1726	p.D576N		NULL	-	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122855451	122855451	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	122855451	122855451	C	A	SNP	DNAH10	NM_207437	human	genbank	54_36p	1	validated	missense	c.1998	p.H666Q	0.98	NULL	-	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122863771	122863771	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	122863771	122863771	T	A	SNP	DNAH10	NM_207437	human	genbank	54_36p	1	validated	silent	c.2352	p.P784	0.99	NULL	-	-	no_errors
ERC1	23085	genome.wustl.edu	36	12	1424012	1424012	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	1424012	1424012	T	G	SNP	ERC1	NM_178040	human	genbank	54_36p	1	reviewed	silent	c.3048	p.L1016	1	NULL	superfamily_Prefoldin;superfamily_lambda repressor-like DNA-binding domains	-	no_errors
MGP	4256	genome.wustl.edu	36	12	14926380	14926380	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	14926380	14926380	G	A	SNP	MGP	NM_000900	human	genbank	54_36p	-1	validated	missense	c.272	p.A91V	1	HMMPfam_Gla	HMMPfam_Gla;superfamily_GLA-domain	-	no_errors
CACNA1C	775	genome.wustl.edu	36	12	2094813	2094813	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	2094813	2094813	C	A	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.212	p.A71E	0.96	NULL	HMMPfam_Ion_trans;HMMPfam_Ca_chan_IQ;superfamily_EF-hand;superfamily_Voltage-gated potassium channels	-	no_errors
LRRK2	120892	genome.wustl.edu	36	12	39031692	39031692	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	39031692	39031692	G	T	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.6466	p.V2156F	1	NULL	HMMPfam_Pkinase;superfamily_Ankyrin repeat;superfamily_Protein kinase-like (PK-like);superfamily_WD40 repeat-like;superfamily_ARM repeat;superfamily_L domain-like;superfamily_P-loop containing nucleoside triphosphate hydrolases;Pkinase;LRR_1;HMMPfam_LRR_1;LRR_2;HMMPfam_LRR_2;Miro;HMMPfam_Miro	-	no_errors
LIMA1	51474	genome.wustl.edu	36	12	48928777	48928777	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	48928777	48928777	G	A	SNP	LIMA1	NM_016357	human	genbank	54_36p	-1	validated	missense	c.25	p.R9W	1	NULL	-	-	no_errors
KRT74	121391	genome.wustl.edu	36	12	51248285	51248285	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	51248285	51248285	G	A	SNP	KRT74	NM_175053	human	genbank	54_36p	-1	validated	silent	c.1290	p.S430	0.84	HMMPfam_Filament	HMMPfam_Filament;superfamily_Ferritin-like	-	no_errors
STAT2	6773	genome.wustl.edu	36	12	55031427	55031427	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	55031427	55031427	A	G	SNP	STAT2	NM_005419	human	genbank	54_36p	-1	reviewed	missense	c.857	p.V286A	0.04	HMMPfam_STAT_alpha	superfamily_p53-like transcription factors;superfamily_Transcription factor STAT-4 N-domain;superfamily_STAT;superfamily_SH2 domain;HMMPfam_STAT_bind;SH2;HMMPfam_SH2;STAT_int;HMMPfam_STAT_int;STAT_alpha;HMMPfam_STAT_alpha;STAT_bind	-	no_errors
LRP1	4035	genome.wustl.edu	36	12	55857547	55857547	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	55857547	55857547	C	T	SNP	LRP1	NM_002332	human	genbank	54_36p	1	validated	missense	c.4267	p.R1423C	0.615	HMMPfam_Ldl_recept_b	HMMPfam_Ldl_recept_b,HMMPfam_Ldl_recept_a,HMMPfam_EGF,HMMPfam_EGF_CA,superfamily_EGF/Laminin,superfamily_LDL receptor-like module,superfamily_YWTD domain	-	no_errors
RAB3IP	117177	genome.wustl.edu	36	12	68419907	68419907	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	68419907	68419907	A	C	SNP	RAB3IP	NM_175623	human	genbank	54_36p	1	validated	missense	c.14	p.K5T	0	NULL	-	-	no_errors
CLEC4D	338339	genome.wustl.edu	36	12	8564164	8564165	+	Missense_Mutation	DNP	TG	TG	GT	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	TG	TG	TG	GT	TG	TG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	8564164	8564165	TG	GT	DNP	CLEC4D	NM_080387	human	genbank	54_36p	1	reviewed	missense	c.460_461	p.W154V	0.853:0.839	HMMPfam_Lectin_C	HMMPfam_Lectin_C;superfamily_C-type lectin-like	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	859235	859235	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	12	859235	859235	C	T	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	missense	c.2609	p.T870I	0.99	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
KIAA0564	23078	genome.wustl.edu	36	13	41147411	41147411	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	13	41147411	41147411	G	C	SNP	KIAA0564	NM_015058	human	genbank	54_36p	-1	validated	missense	c.4349	p.S1450C	1	NULL	-	-	no_errors
PCDH17	27253	genome.wustl.edu	36	13	57106788	57106788	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	13	57106788	57106788	G	A	SNP	PCDH17	NM_001040429	human	genbank	54_36p	1	reviewed	missense	c.2107	p.D703N	1	NULL	-	-	no_errors
SLITRK6	84189	genome.wustl.edu	36	13	85268362	85268362	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	13	85268362	85268362	G	T	SNP	SLITRK6	NM_032229	human	genbank	54_36p	-1	validated	missense	c.283	p.L95I	1	HMMPfam_LRR_1	superfamily_L domain-like;HMMPfam_LRRCT;HMMPfam_LRR_1	-	no_errors
GPR132	29933	genome.wustl.edu	36	14	104589084	104589084	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	14	104589084	104589084	C	T	SNP	GPR132	NM_013345	human	genbank	54_36p	-1	reviewed	silent	c.435	p.V145	0.57	NULL	-	-	no_errors
CHD8	57680	genome.wustl.edu	36	14	20943240	20943240	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	14	20943240	20943240	C	T	SNP	CHD8	NM_020920	human	genbank	54_36p	-1	validated	missense	c.2438	p.R813H	1	HMMPfam_SNF2_N	HMMPfam_SNF2_N;HMMPfam_Chromo;HMMPfam_Helicase_C;HMMPfam_TCH;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Chromo domain-like	-	no_errors
SIPA1L1	26037	genome.wustl.edu	36	14	71155239	71155239	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	14	71155239	71155239	A	G	SNP	SIPA1L1	NM_015556	human	genbank	54_36p	1	provisional	missense	c.1511	p.Y504C	1	NULL	HMMPfam_Rap_GAP;HMMPfam_PDZ;superfamily_PDZ domain-like;superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
C14orf43	91748	genome.wustl.edu	36	14	73275140	73275140	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	14	73275140	73275140	C	G	SNP	C14orf43	NM_001043318	human	genbank	54_36p	-1	validated	missense	c.1325	p.C442S	0.94	NULL	-	-	no_errors
TTLL5	23093	genome.wustl.edu	36	14	75319416	75319416	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	14	75319416	75319416	C	T	SNP	TTLL5	NM_015072	human	genbank	54_36p	1	validated	missense	c.2776	p.P926S	0.36	NULL	HMMPfam_TTL;superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
C14orf102	55051	genome.wustl.edu	36	14	89854202	89854202	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	14	89854202	89854202	A	C	SNP	C14orf102	NM_017970	human	genbank	54_36p	-1	validated	missense	c.73	p.W25G	1	NULL	HMMPfam_DUF1740;superfamily_Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI) domain 3;superfamily_Protein prenylyltransferase;superfamily_TPR-like	-	no_errors
SERPINA10	51156	genome.wustl.edu	36	14	93820080	93820080	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	14	93820080	93820080	C	A	SNP	SERPINA10	NM_001100607	human	genbank	54_36p	-1	validated	missense	c.1310	p.R437M	1	NULL	-	-	no_errors
RYR3	6263	genome.wustl.edu	36	15	31837038	31837038	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	15	31837038	31837038	C	A	SNP	RYR3	NM_001036	human	genbank	54_36p	1	validated	missense	c.8654	p.P2885H	1	NULL	HMMPfam_RYDR_ITPR;HMMPfam_efhand;HMMPfam_RyR;HMMPfam_MIR;HMMPfam_SPRY;HMMPfam_Ion_trans;HMMPfam_RR_TM4-6;HMMPfam_RIH_assoc;HMMPfam_Ins145_P3_rec;superfamily_EF-hand;superfamily_ARM repeat;superfamily_MIR domain (Pfam 02815)	-	no_errors
PLCB2	5330	genome.wustl.edu	36	15	38382800	38382800	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	15	38382800	38382800	T	G	SNP	PLCB2	NM_004573	human	genbank	54_36p	-1	validated	missense	c.212	p.K71T	1	NULL	-	-	no_errors
FAM81A	145773	genome.wustl.edu	36	15	57539488	57539488	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	15	57539488	57539488	C	G	SNP	FAM81A	NM_152450	human	genbank	54_36p	1	validated	missense	c.85	p.L29V	0.98	NULL	-	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61727326	61727326	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	15	61727326	61727326	G	A	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	missense	c.10873	p.H3625Y	1	HMMPfam_WD40	HMMPfam_RCC1;HMMPfam_HECT;HMMPfam_WD40;HMMPfam_SPRY;superfamily_RCC1/BLIP-II;superfamily_WD40 repeat-like;superfamily_Hect E3 ligase catalytic domain	-	no_errors
ENSG00000208756	0	genome.wustl.edu	36	3	151278263	151278263	+	RNA	SNP	C	T	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	151278263	151278263	C	T	SNP	ENSG00000208756	ENST00000386021	human	ensembl	54_36p	-1	known	rna	NULL	NULL		-	-	-	pseudogene
ENSG00000215003	0	genome.wustl.edu	36	16	15933071	15933071	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	16	15933071	15933071	A	G	SNP	ENSG00000215003	ENST00000399416	human	ensembl	54_36p	-1	known	missense	c.554	p.L185P	1	NULL	-	-	no_errors
MLST8	64223	genome.wustl.edu	36	16	2198833	2198833	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	16	2198833	2198833	A	G	SNP	GBL	NM_022372	human	genbank	54_36p	1	validated	missense	c.935	p.Q312R	1	NULL	WD40;HMMPfam_WD40	-	no_errors
ZNF785	146540	genome.wustl.edu	36	16	30501764	30501764	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	16	30501764	30501764	G	A	SNP	ZNF785	NM_152458	human	genbank	54_36p	-1	provisional	missense	c.836	p.T279M	0.83	NULL	-	-	no_errors
CLUAP1	23059	genome.wustl.edu	36	16	3513216	3513216	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	16	3513216	3513216	C	T	SNP	CLUAP1	NM_015041	human	genbank	54_36p	1	provisional	silent	c.771	p.D257	0.13	NULL	-	-	no_errors
RHBDF1	64285	genome.wustl.edu	36	16	49279	49279	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	16	49279	49279	G	A	SNP	RHBDF1	NM_022450	human	genbank	54_36p	-1	validated	silent	c.1962	p.Y654	1	NULL	-	-	no_errors
CNOT1	23019	genome.wustl.edu	36	16	57148389	57148389	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	16	57148389	57148389	A	G	SNP	CNOT1	NM_016284	human	genbank	54_36p	-1	validated	missense	c.2342	p.L781P	1	NULL	HMMPfam_Not1;superfamily_ARM repeat	-	no_errors
CMTM2	146225	genome.wustl.edu	36	16	65178426	65178426	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	16	65178426	65178426	G	C	SNP	CMTM2	NM_144673	human	genbank	54_36p	1	reviewed	missense	c.470	p.C157S		NULL	-	-	no_errors
LOC729313	729313	genome.wustl.edu	36	16	80067560	80067560	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	16	80067560	80067560	G	A	SNP	LOC729313	XR_015971	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
LRRC50	123872	genome.wustl.edu	36	16	82761021	82761021	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	16	82761021	82761021	G	A	SNP	LRRC50	NM_178452	human	genbank	54_36p	1	validated	silent	c.1086	p.K362	0.01	NULL	HMMPfam_LRR_1;superfamily_Outer arm dynein light chain 1	-	no_errors
SPG7	6687	genome.wustl.edu	36	16	88130791	88130791	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	16	88130791	88130791	C	T	SNP	SPG7	NM_199367	human	genbank	54_36p	1	reviewed	missense	c.1442	p.S481L		NULL	-	-	no_errors
NLK	51701	genome.wustl.edu	36	17	23512371	23512371	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	17	23512371	23512371	C	A	SNP	NLK	NM_016231	human	genbank	54_36p	1	validated	missense	c.703	p.P235T	1	NULL	-	-	no_errors
ZZEF1	23140	genome.wustl.edu	36	17	3867594	3867594	+	Silent	SNP	G	C	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	17	3867594	3867594	G	C	SNP	ZZEF1	NM_015113	human	genbank	54_36p	-1	validated	silent	c.7821	p.L2607	1	NULL	HMMPfam_ZZ;superfamily_Spermadhesin CUB domain;HMMPfam_efhand;HMMPfam_APC10;superfamily_Galactose-binding domain-like;superfamily_EF-hand;superfamily_Cysteine-rich domain	-	no_errors
PSMB6	5694	genome.wustl.edu	36	17	4647940	4647940	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	17	4647940	4647940	A	G	SNP	PSMB6	NM_002798	human	genbank	54_36p	1	reviewed	missense	c.308	p.E103G	1	HMMPfam_Proteasome	HMMPfam_Proteasome;superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517869	7517869	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	17	7517869	7517869	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.794	p.L265P	0.99	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
HEXDC	284004	genome.wustl.edu	36	17	77984922	77984922	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	17	77984922	77984922	G	C	SNP	HEXDC	NM_173620	human	genbank	54_36p	1	validated	missense	c.382	p.A128P	0.71	NULL	-	-	no_errors
TMED1	11018	genome.wustl.edu	36	19	10806964	10806964	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	10806964	10806964	G	T	SNP	TMED1	NM_006858	human	genbank	54_36p	-1	reviewed	silent	c.249	p.V83	1	HMMPfam_EMP24_GP25L	HMMPfam_EMP24_GP25L;superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_errors
HOOK2	29911	genome.wustl.edu	36	19	12742827	12742827	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	12742827	12742827	G	A	SNP	HOOK2	NM_013312	human	genbank	54_36p	-1	validated	missense	c.821	p.A274V		HMMPfam_HOOK	HMMPfam_HOOK;superfamily_UBA-like	-	no_errors
CACNA1A	773	genome.wustl.edu	36	19	13258396	13258396	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	13258396	13258396	C	G	SNP	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	missense	c.3477	p.K1159N	1	NULL	HMMPfam_Ion_trans;HMMPfam_Ca_chan_IQ;superfamily_Voltage-gated potassium channels	-	no_errors
UPF1	5976	genome.wustl.edu	36	19	18824027	18824027	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	18824027	18824027	C	T	SNP	UPF1	NM_002911	human	genbank	54_36p	1	reviewed	silent	c.894	p.D298	1	NULL	HMMPfam_ResIII;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
THOP1	7064	genome.wustl.edu	36	19	2750744	2750744	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	2750744	2750744	C	A	SNP	THOP1	NM_003249	human	genbank	54_36p	1	provisional	missense	c.544	p.L182M	1	NULL	"HMMPfam_Peptidase_M3;superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ZNF536	9745	genome.wustl.edu	36	19	35626475	35626475	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	35626475	35626475	C	G	SNP	ZNF536	NM_014717	human	genbank	54_36p	1	provisional	missense	c.166	p.P56A	1	NULL	-	-	no_errors
FFAR3	2865	genome.wustl.edu	36	19	40541728	40541728	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	40541728	40541728	C	T	SNP	FFAR3	NM_005304	human	genbank	54_36p	1	validated	silent	c.96	p.N32	1	NULL	-	-	no_errors
ZNF568	374900	genome.wustl.edu	36	19	42132392	42132392	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	42132392	42132392	C	A	SNP	ZNF568	NM_198539	human	genbank	54_36p	1	validated	nonsense	c.497	p.S166*		NULL	-	-	no_errors
EIF3K	27335	genome.wustl.edu	36	19	43801800	43801800	+	Missense_Mutation	SNP	A	A	G		Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	43801800	43801800	A	G	SNP	EIF3K	NM_013234	human	genbank	54_36p	1	validated	missense	c.52	p.I18V	1	NULL	-	-	no_errors
PAK4	10298	genome.wustl.edu	36	19	44360981	44360981	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	44360981	44360981	G	A	SNP	PAK4	NM_001014831	human	genbank	54_36p	1	reviewed	silent	c.1698	p.L566	1	HMMPfam_Pkinase	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like);PBD;HMMPfam_PBD;Pkinase	-	no_errors
CGB5	93659	genome.wustl.edu	36	19	54240166	54240166	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	54240166	54240166	T	C	SNP	CGB5	NM_033043	human	genbank	54_36p	1	reviewed	missense	c.301	p.S101P	1	NULL	-	-	no_errors
KIR3DL3	115653	genome.wustl.edu	36	19	59931137	59931137	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	59931137	59931137	T	A	SNP	KIR3DL3	NM_153443	human	genbank	54_36p	1	reviewed	missense	c.604	p.L202I	0	NULL	HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
NAT14	57106	genome.wustl.edu	36	19	60689988	60689988	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	60689988	60689988	G	T	SNP	NAT14	NM_020378	human	genbank	54_36p	1	provisional	missense	c.474	p.M158I	0.02	NULL	-	-	no_errors
ZNF470	388566	genome.wustl.edu	36	19	61780271	61780271	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	61780271	61780271	A	G	SNP	ZNF470	NM_001001668	human	genbank	54_36p	1	validated	missense	c.662	p.D221G		NULL	HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers	-	no_errors
FBN3	84467	genome.wustl.edu	36	19	8107405	8107405	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	19	8107405	8107405	G	A	SNP	FBN3	NM_032447	human	genbank	54_36p	-1	reviewed	silent	c.1212	p.T404	0.12	NULL	HMMPfam_TB;HMMPfam_EGF;superfamily_Growth factor receptor domain;HMMPfam_EGF_CA;superfamily_EGF/Laminin;superfamily_TB module/8-cys domain	-	no_errors
ENSG00000161149	0	genome.wustl.edu	36	22	19693539	19693539	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	22	19693539	19693539	C	T	SNP	ENSG00000161149	ENST00000292748	human	ensembl	54_36p	-1	known	silent	c.321	p.T107	1	NULL	HMMPfam_Tubulin;superfamily_RNI-like;superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
NR4A2	4929	genome.wustl.edu	36	2	156891607	156891607	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	156891607	156891607	C	A	SNP	NR4A2	NM_006186	human	genbank	54_36p	-1	reviewed	silent	c.1230	p.L410	1	NULL	HMMPfam_Hormone_recep;HMMPfam_zf-C4;superfamily_Nuclear receptor ligand-binding domain;superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179193272	179193272	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	179193272	179193272	G	A	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	silent	c.38517	p.D12839	1	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TTN	7273	genome.wustl.edu	36	2	179206827	179206827	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	179206827	179206827	A	T	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	missense	c.34940	p.V11647D	1	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TTN	7273	genome.wustl.edu	36	2	179321800	179321800	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	179321800	179321800	A	G	SNP	TTN	NM_133379	human	genbank	54_36p	-1	reviewed	silent	c.13572	p.D4524	0	NULL	HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_Immunoglobulin,superfamily_beta-sandwich domain of Sec23/24	-	no_errors
SPEG	10290	genome.wustl.edu	36	2	220024122	220024154	+	In_Frame_Del	DEL	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	-	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	-	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	220024122	220024154	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	-	DEL	SPEG	NM_005876	human	genbank	54_36p	1	validated	in_frame_del	c.2134_2166	p.SAGEEPLEAPV713in_frame_del	1.000:1.000:1.000:1.000:0.997:0.463:0.956:0.951:0.626:0.998:0.999:0.997:1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:0.885:0.893:0.939:0.950:1.000:1.000:1.000:1.000:1.000:0.961:0.995:0.991:0.073	NULL	-	(deletion:cds_exon[220024102;220024245])	no_errors
SP110	3431	genome.wustl.edu	36	2	230785783	230785783	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	230785783	230785783	G	C	SNP	SP110	NM_080424	human	genbank	54_36p	-1	reviewed	missense	c.520	p.P174A	0.01	NULL	HMMPfam_SAND;HMMPfam_Bromodomain;HMMPfam_PHD;HMMPfam_Sp100;superfamily_SAND domain-like;superfamily_FYVE/PHD zinc finger;superfamily_Bromodomain	-	no_errors
SNX17	9784	genome.wustl.edu	36	2	27451898	27451898	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	27451898	27451898	C	T	SNP	SNX17	NM_014748	human	genbank	54_36p	1	reviewed	silent	c.796	p.L266	0.9	NULL	HMMPfam_PX;superfamily_PX domain	-	no_errors
FAM98A	25940	genome.wustl.edu	36	2	33670758	33670758	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	33670758	33670758	A	T	SNP	FAM98A	NM_015475	human	genbank	54_36p	-1	validated	missense	c.230	p.L77H	1	NULL	-	-	no_errors
CLEC4F	165530	genome.wustl.edu	36	2	70897742	70897742	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	70897742	70897742	G	T	SNP	CLEC4F	NM_173535	human	genbank	54_36p	-1	validated	missense	c.279	p.H93Q		NULL	-	-	no_errors
DQX1	165545	genome.wustl.edu	36	2	74604673	74604673	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	74604673	74604673	G	A	SNP	DQX1	NM_133637	human	genbank	54_36p	-1	validated	missense	c.347	p.P116L		NULL	-	-	no_errors
RMND5A	64795	genome.wustl.edu	36	2	86845685	86845685	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	86845685	86845685	G	C	SNP	RMND5A	NM_022780	human	genbank	54_36p	1	validated	missense	c.546	p.M182I	1	NULL	-	-	no_errors
RPIA	22934	genome.wustl.edu	36	2	88809936	88809936	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	2	88809936	88809936	G	A	SNP	RPIA	NM_144563	human	genbank	54_36p	1	validated	missense	c.428	p.G143D	1	HMMPfam_Rib_5-P_isom_A	HMMPfam_Rib_5-P_isom_A;superfamily_NagB/RpiA/CoA transferase-like;superfamily_D-ribose-5-phosphate isomerase (RpiA) lid domain	-	no_errors
KIF3B	9371	genome.wustl.edu	36	20	30368004	30368004	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	20	30368004	30368004	G	C	SNP	KIF3B	NM_004798	human	genbank	54_36p	1	reviewed	missense	c.1520	p.R507T	1	NULL	Kinesin;HMMPfam_Kinesin;P-loop containing nucleoside triphosphate hydrolases;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BPI	671	genome.wustl.edu	36	20	36385777	36385777	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	20	36385777	36385777	T	C	SNP	BPI	NM_001725	human	genbank	54_36p	1	reviewed	missense	c.860	p.L287P	0.82	NULL	-	-	no_errors
CDH26	60437	genome.wustl.edu	36	20	58004364	58004364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	20	58004364	58004364	G	A	SNP	CDH26	NM_177980	human	genbank	54_36p	1	reviewed	missense	c.1748	p.G583E	0.95	NULL	-	-	no_errors
IGLV10-54	28772	genome.wustl.edu	36	22	20899407	20899407	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	22	20899407	20899407	G	T	SNP	IGLV10-54	ENST00000390287	human	ensembl	54_36p	1	known	missense	c.99	p.L33F	0.01	NULL	-	-	no_stop_codon:bad_bp_length_for_coding_region
SLC5A3	6526	genome.wustl.edu	36	21	34389965	34389965	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	21	34389965	34389965	A	G	SNP	SLC5A3	NM_006933	human	genbank	54_36p	1	validated	missense	c.598	p.M200V	1	HMMPfam_SSF	HMMPfam_SSF	-	no_errors
CHAF1B	8208	genome.wustl.edu	36	21	36680416	36680416	+	Missense_Mutation	SNP	G	G	T		Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	21	36680416	36680416	G	T	SNP	CHAF1B	NM_005441	human	genbank	54_36p	1	reviewed	missense	c.112	p.D38Y	1	HMMPfam_WD40	HMMPfam_WD40,superfamily_WD40 repeat-like	-	no_errors
C2CD2	25966	genome.wustl.edu	36	21	42200854	42200854	+	Missense_Mutation	SNP	C	C	G		Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	21	42200854	42200854	C	G	SNP	C2CD2	NM_015500	human	genbank	54_36p	-1	validated	missense	c.1127	p.G376A	0.997	NULL	-	-	no_errors
TMPRSS3	64699	genome.wustl.edu	36	21	42669753	42669753	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	21	42669753	42669753	G	T	SNP	TMPRSS3	NM_024022	human	genbank	54_36p	-1	reviewed	missense	c.1160	p.A387E	1	HMMPfam_Trypsin	HMMPfam_SRCR;superfamily_SRCR-like;HMMPfam_Trypsin;superfamily_Trypsin-like serine proteases;superfamily_LDL receptor-like module	-	no_errors
PTTG1IP	754	genome.wustl.edu	36	21	45100669	45100669	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	21	45100669	45100669	C	G	SNP	PTTG1IP	NM_004339	human	genbank	54_36p	-1	reviewed	missense	c.316	p.G106R	0.87	NULL	-	-	no_errors
TEF	7008	genome.wustl.edu	36	22	40113439	40113444	+	In_Frame_Del	DEL	TGGACC	TGGACC	-	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	TGGACC	TGGACC	TGGACC	-	TGGACC	TGGACC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	22	40113439	40113444	TGGACC	-	DEL	TEF	NM_003216	human	genbank	54_36p	1	reviewed	in_frame_del	c.296_301	p.LD101in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	-	(deletion:cds_exon[40113301;40113618])	no_errors
GOLGB1	2804	genome.wustl.edu	36	3	122898250	122898250	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	122898250	122898250	T	A	SNP	GOLGB1	NM_004487	human	genbank	54_36p	-1	validated	missense	c.3795	p.E1265D		NULL	-	-	no_errors
FAM162A	26355	genome.wustl.edu	36	3	123605880	123605880	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	123605880	123605880	T	C	SNP	FAM162A	NM_014367	human	genbank	54_36p	1	validated	silent	c.243	p.D81	0.93	NULL	-	-	no_errors
SEMA5B	54437	genome.wustl.edu	36	3	124162677	124162677	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	124162677	124162677	C	A	SNP	SEMA5B	NM_001031702	human	genbank	54_36p	-1	validated	missense	c.124	p.G42C	0.1	NULL	HMMPfam_TSP_1;HMMPfam_Sema;superfamily_Sema domain;HMMPfam_PSI;superfamily_Plexin repeat;superfamily_TSP-1 type 1 repeat	-	no_errors
PIK3R4	30849	genome.wustl.edu	36	3	131887939	131887939	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	131887939	131887939	T	G	SNP	PIK3R4	NM_014602	human	genbank	54_36p	-1	validated	missense	c.3281	p.E1094A	1	NULL	HMMPfam_HEAT;HMMPfam_Pkinase;HMMPfam_WD40;superfamily_Protein kinase-like (PK-like);superfamily_WD40 repeat-like;superfamily_ARM repeat	-	no_errors
TMEM108	66000	genome.wustl.edu	36	3	134582534	134582534	+	Missense_Mutation	SNP	T	T	A		Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	134582534	134582534	T	A	SNP	TMEM108	NM_023943	human	genbank	54_36p	1	validated	missense	c.1289	p.L430H	1	NULL	-	-	no_errors
ATR	545	genome.wustl.edu	36	3	143686726	143686726	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	143686726	143686726	T	A	SNP	ATR	NM_001184	human	genbank	54_36p	-1	reviewed	missense	c.6167	p.N2056I	1	HMMPfam_FAT	HMMPfam_HEAT;HMMPfam_PI3_PI4_kinase;HMMPfam_FAT;HMMPfam_FATC;superfamily_Protein kinase-like (PK-like);HMMPfam_UME;superfamily_ARM repeat;superfamily_TPR-like	-	no_errors
EOMES	8320	genome.wustl.edu	36	3	27733789	27733789	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	27733789	27733789	C	A	SNP	EOMES	NM_005442	human	genbank	54_36p	-1	reviewed	nonsense	c.1837	p.E613*	1	NULL	-	-	no_errors
ZNF860	344787	genome.wustl.edu	36	3	32005808	32005808	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	32005808	32005808	C	T	SNP	ZNF860	ENST00000360311	human	ensembl	54_36p	1	known	missense	c.185	p.A62V	0.02	NULL	-	-	no_stop_codon
DCLK3	85443	genome.wustl.edu	36	3	36731996	36731996	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	36731996	36731996	G	A	SNP	DCLK3	NM_033403	human	genbank	54_36p	-1	validated	missense	c.1774	p.R592W	0.34	NULL	-	-	no_errors
KIAA0922	23240	genome.wustl.edu	36	4	154722035	154722035	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	154722035	154722035	T	G	SNP	KIAA0922	NM_015196	human	genbank	54_36p	1	validated	silent	c.321	p.V107	0.01	NULL	-	-	no_errors
ING2	3622	genome.wustl.edu	36	4	184669015	184669015	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	184669015	184669015	G	T	SNP	ING2	NM_001564	human	genbank	54_36p	1	validated	missense	c.759	p.W253C	1	HMMPfam_PHD	HMMPfam_PHD;superfamily_FYVE/PHD zinc finger	-	no_errors
TLR3	7098	genome.wustl.edu	36	4	187240618	187240618	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	187240618	187240618	A	G	SNP	TLR3	NM_003265	human	genbank	54_36p	1	reviewed	missense	c.784	p.T262A		HMMPfam_LRR_1	HMMPfam_TIR;superfamily_Toll/Interleukin receptor TIR domain;HMMPfam_LRRCT;HMMPfam_LRR_1;superfamily_L domain-like	-	no_errors
KCNIP4	80333	genome.wustl.edu	36	4	20493348	20493348	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	20493348	20493348	C	T	SNP	KCNIP4	NM_025221	human	genbank	54_36p	-1	reviewed	silent	c.144	p.T48	0.88	NULL	-	-	overly_large_intron
CNGA1	1259	genome.wustl.edu	36	4	47634201	47634212	+	Frame_Shift_Del	DEL	GACCAGTAAAGG	GACCAGTAAAGG	TA	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	GACCAGTAAAGG	GACCAGTAAAGG	GACCAGTAAAGG	TA	GACCAGTAAAGG	GACCAGTAAAGG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	47634201	47634212	GACCAGTAAAGG	TA	DEL	CNGA1	NM_000087	human	genbank	54_36p	-1	reviewed	frame_shift_del							
FIP1L1	81608	genome.wustl.edu	36	4	53951540	53951540	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	53951540	53951540	T	A	SNP	FIP1L1	NM_030917	human	genbank	54_36p	1	reviewed	missense	c.493	p.W165R	1	HMMPfam_Fip1	HMMPfam_Fip1	-	no_errors
TBC1D14	57533	genome.wustl.edu	36	4	7046811	7046811	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	7046811	7046811	G	C	SNP	TBC1D14	NM_020773	human	genbank	54_36p	1	validated	splice_site	c.799-1	e3-1	1	-	-	-	no_errors
ALB	213	genome.wustl.edu	36	4	74493974	74493974	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	74493974	74493974	A	T	SNP	ALB	NM_000477	human	genbank	54_36p	1	reviewed	missense	c.521	p.Y174F	1	NULL	-	-	no_errors
CPZ	8532	genome.wustl.edu	36	4	8659894	8659894	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	8659894	8659894	G	T	SNP	CPZ	NM_001014447	human	genbank	54_36p	1	reviewed	missense	c.1069	p.V357L	1	NULL	-	-	no_errors
PTPN13	5783	genome.wustl.edu	36	4	87899222	87899222	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	87899222	87899222	C	G	SNP	PTPN13	NM_080685	human	genbank	54_36p	1	reviewed	missense	c.3525	p.I1175M	1	HMMPfam_PDZ	HMMPfam_Y_phosphatase;HMMPfam_Band_41;HMMPfam_PDZ;superfamily_PDZ domain-like;superfamily_PAZ domain;superfamily_Second domain of FERM;superfamily_PH domain-like;superfamily_(Phosphotyrosine protein) phosphatases II;superfamily_Ubiquitin-like	-	no_errors
FAM35B	414241	genome.wustl.edu	36	10	46347869	46347869	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	10	46347869	46347869	A	C	SNP	FAM35B	ENST00000301038	human	ensembl	54_36p	1	known	missense	c.382	p.S128R	0.67	NULL	-	-	no_errors
IL3	3562	genome.wustl.edu	36	5	131426144	131426144	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	5	131426144	131426144	C	A	SNP	IL3	NM_000588	human	genbank	54_36p	1	reviewed	silent	c.321	p.A107		HMMPfam_IL3	HMMPfam_IL3;superfamily_4-helical cytokines	-	no_errors
PDLIM4	8572	genome.wustl.edu	36	5	131635725	131635725	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	5	131635725	131635725	G	A	SNP	PDLIM4	NM_003687	human	genbank	54_36p	1	validated	silent	c.897	p.R299	0.99	HMMPfam_LIM	HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_LIM;superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
TERT	7015	genome.wustl.edu	36	5	1333401	1333401	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	5	1333401	1333401	G	T	SNP	TERT	NM_198253	human	genbank	54_36p	-1	reviewed	missense	c.1822	p.Q608K		NULL	-	-	no_errors
SPOCK1	6695	genome.wustl.edu	36	5	136356177	136356177	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	5	136356177	136356177	T	G	SNP	SPOCK1	NM_004598	human	genbank	54_36p	-1	reviewed	missense	c.601	p.K201Q	1	NULL	HMMPfam_Thyroglobulin_1;HMMPfam_Kazal_2;superfamily_Kazal-type serine protease inhibitors;superfamily_EF-hand;superfamily_EGF/Laminin;superfamily_Thyroglobulin type-1 domain	-	no_errors
PSD2	84249	genome.wustl.edu	36	5	139196765	139196765	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	5	139196765	139196765	A	G	SNP	PSD2	NM_032289	human	genbank	54_36p	1	provisional	missense	c.1589	p.K530R	1	HMMPfam_PH	superfamily_Sec7 domain;HMMPfam_PH;superfamily_PH domain-like;HMMPfam_Sec7	-	no_errors
SPINK5	11005	genome.wustl.edu	36	5	147491087	147491087	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	5	147491087	147491087	G	C	SNP	SPINK5	NM_006846	human	genbank	54_36p	1	reviewed	missense	c.3037	p.V1013L	1	HMMPfam_Kazal_1	HMMPfam_Kazal_1;HMMPfam_Kazal_2;superfamily_Kazal-type serine protease inhibitors	-	no_errors
LAMA4	3910	genome.wustl.edu	36	6	112682024	112682040	+	Frame_Shift_Del	DEL	GCCAGGCTGAGCTCAAA	GCCAGGCTGAGCTCAAA	-		Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	GCCAGGCTGAGCTCAAA	GCCAGGCTGAGCTCAAA	GCCAGGCTGAGCTCAAA	-	GCCAGGCTGAGCTCAAA	GCCAGGCTGAGCTCAAA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	112682024	112682040	GCCAGGCTGAGCTCAAA	-	DEL	LAMA4	NM_001105206	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.22_6	p.S4fs	0.491:0.957:0.996:1.000:1.000:1.000:0.999:0.998:1.000:1.000:1.000:0.999:0.999:1.000:0.999:1.000:1.000	NULL	-	(deletion:cds_exon[112681851,112682045])	no_errors
C6orf70	55780	genome.wustl.edu	36	6	169921305	169921306	+	Missense_Mutation	DNP	GC	AG	AG	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	GC	GC	AG	AG	GC	GC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	169921305	169921306	GC	AG	DNP	C6orf70	NM_018341	human	genbank	54_36p	1	validated	missense	c.1842_1843	p.Q615E	1.000:1.000	NULL	-	-	no_errors
VPS52	6293	genome.wustl.edu	36	6	33339806	33339806	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	33339806	33339806	G	C	SNP	VPS52	NM_022553	human	genbank	54_36p	-1	reviewed	missense	c.1577	p.T526R	1	NULL	-	-	no_errors
SPDEF	25803	genome.wustl.edu	36	6	34620202	34620202	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	34620202	34620202	G	A	SNP	SPDEF	NM_012391	human	genbank	54_36p	-1	provisional	silent	c.9	p.S3	1	NULL	"HMMPfam_Ets;HMMPfam_SAM_PNT;superfamily_SAM/Pointed domain;superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
UHRF1BP1	54887	genome.wustl.edu	36	6	34939818	34939818	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	34939818	34939818	C	A	SNP	UHRF1BP1	NM_017754	human	genbank	54_36p	1	validated	missense	c.3277	p.L1093I	1	NULL	-	-	no_errors
RHAG	6005	genome.wustl.edu	36	6	49690520	49690521	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	GA	GA	GA	TT	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	49690520	49690521	GA	TT	DNP	RHAG	NM_000324	human	genbank	54_36p	-1	reviewed	missense	c.646_645	p.L216I	0.988:0.693	NULL	-	-	no_errors
DST	667	genome.wustl.edu	36	6	56525723	56525723	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	56525723	56525723	T	C	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.8935	p.K2979E	1	NULL	-	-	no_errors
DST	667	genome.wustl.edu	36	6	56574323	56574323	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	56574323	56574323	T	C	SNP	DST	ENST00000370769	human	ensembl	54_36p	-1	known	silent	c.10791	p.K3597	0.98	NULL	HMMPfam_CH;Spectrin;HMMPfam_Spectrin;efhand;HMMPfam_efhand;GAS2;HMMPfam_GAS2;Spectrin repeat;superfamily_Spectrin repeat;EF-hand;superfamily_EF-hand;Calponin-homology domain CH-domain;superfamily_Calponin-homology domain CH-domain;Adenylyl and guanylyl cyclase catalytic domain;superfamily_Adenylyl and guanylyl cyclase catalytic domain;Plakin repeat;superfamily_Plakin repeat;Plectin;HMMPfam_Plectin;SH3_1;HMMPfam_SH3_1;CH	-	no_errors
DST	667	genome.wustl.edu	36	6	56605739	56605739	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	56605739	56605739	C	T	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.3044	p.R1015H	1	NULL	-	-	no_errors
BAI3	577	genome.wustl.edu	36	6	69741948	69741948	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	69741948	69741948	C	G	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	missense	c.1729	p.H577D	1	NULL	GPS;HMMPfam_GPS;7tm_2;HMMPfam_7tm_2;Spermadhesin CUB domain;superfamily_Spermadhesin CUB domain;TSP_1;HMMPfam_TSP_1;HRM;HMMPfam_HRM;TSP-1 type 1 repeat;superfamily_TSP-1 type 1 repeat	-	no_errors
COL9A1	1297	genome.wustl.edu	36	6	70999156	70999180	+	Frame_Shift_Del	DEL	TCTGGACGCTTAAGACTGGCAGCCA	TCTGGACGCTTAAGACTGGCAGCCA	-	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	TCTGGACGCTTAAGACTGGCAGCCA	TCTGGACGCTTAAGACTGGCAGCCA	TCTGGACGCTTAAGACTGGCAGCCA	-	TCTGGACGCTTAAGACTGGCAGCCA	TCTGGACGCTTAAGACTGGCAGCCA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	70999156	70999180	TCTGGACGCTTAAGACTGGCAGCCA	-	DEL	COL9A1	NM_001851	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2354_2330	p.M777fs	1.000:1.000:0.960:1.000:1.000:0.998:1.000:0.999:0.997:0.990:0.905:0.860:0.999:1.000:0.999:1.000:1.000:0.994:1.000:1.000:0.987:1.000:1.000:1.000:1.000	NULL	-	(deletion:cds_exon[70999007;70999195])	no_errors
RREB1	6239	genome.wustl.edu	36	6	7175676	7175676	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	7175676	7175676	G	T	SNP	RREB1	NM_001003699	human	genbank	54_36p	1	validated	missense	c.2345	p.G782V	0.545	NULL	HMMPfam_zf-C2H2,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DSP	1832	genome.wustl.edu	36	6	7504456	7504456	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	6	7504456	7504456	A	G	SNP	DSP	NM_004415	human	genbank	54_36p	1	reviewed	splice_site	c.423-2	e4-2	0.95	-	-	-	no_errors
LOC100129267	100129267	genome.wustl.edu	36	10	65600387	65600387	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	10	65600387	65600387	T	C	SNP	LOC100129267	XR_037245	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
C7orf52	375607	genome.wustl.edu	36	7	100604696	100604696	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	7	100604696	100604696	G	T	SNP	C7orf52	NM_198571	human	genbank	54_36p	-1	predicted	missense	c.113	p.A38D	0.01	NULL	-	-	no_errors
ZNF277	11179	genome.wustl.edu	36	7	111723525	111723525	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	7	111723525	111723525	C	A	SNP	ZNF277	NM_021994	human	genbank	54_36p	1	validated	missense	c.388	p.Q130K	1	NULL	-	-	no_errors
SCIN	85477	genome.wustl.edu	36	7	12631265	12631265	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	7	12631265	12631265	G	A	SNP	SCIN	NM_033128	human	genbank	54_36p	1	validated	missense	c.124	p.A42T	0.02	HMMPfam_Gelsolin	HMMPfam_Gelsolin;superfamily_Actin depolymerizing proteins;superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
LOC647081	647081	genome.wustl.edu	36	7	134780340	134780340	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	7	134780340	134780340	T	C	SNP	LOC647081	XR_017490	human	genbank	54_36p	1	model	rna	NULL	NULL	0.16	-	-	-	pseudogene
ZNF425	155054	genome.wustl.edu	36	7	148432349	148432349	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	7	148432349	148432349	T	C	SNP	ZNF425	NM_001001661	human	genbank	54_36p	-1	provisional	missense	c.1547	p.H516R	0.88	HMMPfam_zf-C2H2	HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers	-	no_errors
CAMK2B	816	genome.wustl.edu	36	7	44247903	44247903	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	7	44247903	44247903	C	T	SNP	CAMK2B	NM_001220	human	genbank	54_36p	-1	reviewed	missense	c.824	p.R275H	1	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like);HMMPfam_CaMKII_AD;superfamily_NTF2-like	-	no_errors
LOC442319	442319	genome.wustl.edu	36	7	63176462	63176462	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	7	63176462	63176462	A	T	SNP	LOC442319	XR_016680	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	no_errors
LOC644387	644387	genome.wustl.edu	36	7	63834059	63834059	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	7	63834059	63834059	C	T	SNP	LOC644387	XR_016224	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.13	-	-	-	pseudogene
DYNC1I1	1780	genome.wustl.edu	36	7	95280563	95280563	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	7	95280563	95280563	G	A	SNP	DYNC1I1	NM_004411	human	genbank	54_36p	1	validated	missense	c.343	p.G115S	0.99	NULL	HMMPfam_WD40;superfamily_WD40 repeat-like	-	no_errors
ZNF498	221785	genome.wustl.edu	36	7	99056982	99056982	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	7	99056982	99056982	C	T	SNP	ZNF498	NM_145115	human	genbank	54_36p	1	validated	silent	c.438	p.G146	0.01	NULL	-	-	no_errors
LOC100131940	100131940	genome.wustl.edu	36	4	77485101	77485101	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	4	77485101	77485101	G	C	SNP	LOC100131940	XR_037574	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CSMD3	114788	genome.wustl.edu	36	8	113395848	113395848	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	8	113395848	113395848	A	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.7535	p.L2512H	1	HMMPfam_CUB	HMMPfam_Sushi;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;superfamily_Complement control module/SCR domain	-	no_errors
EXT1	2131	genome.wustl.edu	36	8	118894310	118894310	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	8	118894310	118894310	C	T	SNP	EXT1	NM_000127	human	genbank	54_36p	-1	reviewed	silent	c.1704	p.T568	0.38	HMMPfam_EXTL2	HMMPfam_Exostosin;HMMPfam_EXTL2;superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
ZHX1	11244	genome.wustl.edu	36	8	124336392	124336392	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	8	124336392	124336392	C	A	SNP	ZHX1	NM_001017926	human	genbank	54_36p	-1	reviewed	nonsense	c.976	p.E326*	1	NULL	-	-	no_errors
FAM135B	51059	genome.wustl.edu	36	8	139249384	139249384	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	8	139249384	139249384	G	A	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	silent	c.1194	p.I398	0.99	NULL	-	-	no_errors
SULF1	23213	genome.wustl.edu	36	8	70713610	70713610	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	8	70713610	70713610	T	C	SNP	SULF1	NM_015170	human	genbank	54_36p	1	validated	silent	c.2514	p.Y838	0.98	NULL	HMMPfam_Sulfatase;superfamily_Alkaline phosphatase-like	-	no_errors
TLR4	7099	genome.wustl.edu	36	9	119510687	119510687	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	9	119510687	119510687	G	T	SNP	TLR4	NM_138554	human	genbank	54_36p	1	reviewed	missense	c.119	p.C40F	1	NULL	HMMPfam_TIR;superfamily_Toll/Interleukin receptor TIR domain;HMMPfam_LRRCT;HMMPfam_LRR_1;superfamily_L domain-like	-	no_errors
TLR4	7099	genome.wustl.edu	36	9	119516667	119516667	+	Missense_Mutation	SNP	G	G	A		Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	9	119516667	119516667	G	A	SNP	TLR4	NM_138554	human	genbank	54_36p	1	reviewed	missense	c.2440	p.A814T	1	HMMPfam_TIR	HMMPfam_TIR,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRRCT,HMMPfam_LRR_1,superfamily_L domain-like	-	no_errors
RPL35	11224	genome.wustl.edu	36	9	126660108	126660108	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	9	126660108	126660108	C	T	SNP	RPL35	NM_007209	human	genbank	54_36p	-1	reviewed	silent	c.282	p.R94	1	NULL	-	-	no_errors
UNC13B	10497	genome.wustl.edu	36	9	35393794	35393794	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	9	35393794	35393794	G	A	SNP	UNC13B	NM_006377	human	genbank	54_36p	1	reviewed	missense	c.4540	p.V1514M	1	NULL	-	-	no_errors
ZBTB5	9925	genome.wustl.edu	36	9	37432187	37432187	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	9	37432187	37432187	G	T	SNP	ZBTB5	NM_014872	human	genbank	54_36p	-1	validated	missense	c.362	p.T121K	1	NULL	-	-	no_errors
KIAA2026	158358	genome.wustl.edu	36	9	5959314	5959314	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	9	5959314	5959314	G	C	SNP	KIAA2026	NM_001017969	human	genbank	54_36p	-1	validated	missense	c.917	p.A306G	1	NULL	-	-	no_errors
C9orf129	445577	genome.wustl.edu	36	9	95120651	95120651	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	9	95120651	95120651	T	A	SNP	C9orf129	NM_001098808	human	genbank	54_36p	-1	predicted	silent	c.441	p.A147		NULL	-	-	no_errors
ENSG00000189002	0	genome.wustl.edu	36	3	90337887	90337887	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	3	90337887	90337887	C	A	SNP	ENSG00000189002	ENST00000340162	human	ensembl	54_36p	-1	known	missense	c.7	p.A3S	0.02	NULL	-	-	no_errors
GPR119	139760	genome.wustl.edu	36	X	129346190	129346190	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	129346190	129346190	G	A	SNP	GPR119	NM_178471	human	genbank	54_36p	-1	provisional	missense	c.913	p.L305F		NULL	-	-	no_errors
SLITRK2	84631	genome.wustl.edu	36	X	144712039	144712039	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	144712039	144712039	G	A	SNP	SLITRK2	NM_032539	human	genbank	54_36p	1	validated	missense	c.404	p.S135N	1	NULL	-	-	no_errors
SLC10A3	8273	genome.wustl.edu	36	X	153369636	153369636	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	153369636	153369636	C	T	SNP	SLC10A3	NM_019848	human	genbank	54_36p	-1	reviewed	missense	c.838	p.D280N	1	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
DDX3X	1654	genome.wustl.edu	36	X	41091083	41091083	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	41091083	41091083	G	C	SNP	DDX3X	NM_001356	human	genbank	54_36p	1	reviewed	missense	c.1643	p.R548T	1	NULL	-	-	no_errors
DDX3X	1654	genome.wustl.edu	36	X	41091091	41091091	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	41091091	41091091	A	C	SNP	DDX3X	NM_001356	human	genbank	54_36p	1	reviewed	missense	c.1651	p.N551H	1	NULL	-	-	no_errors
MAGED1	9500	genome.wustl.edu	36	X	51655066	51655066	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	51655066	51655066	A	T	SNP	MAGED1	NM_001005333	human	genbank	54_36p	1	reviewed	nonsense	c.391	p.K131*	1	NULL	-	-	no_errors
ARHGEF9	23229	genome.wustl.edu	36	X	62815163	62815163	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	62815163	62815163	C	A	SNP	ARHGEF9	NM_015185	human	genbank	54_36p	-1	validated	missense	c.576	p.W192C	1	HMMPfam_RhoGEF	HMMPfam_RhoGEF;HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_PH;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like	-	no_errors
AR	367	genome.wustl.edu	36	X	66854056	66854056	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	66854056	66854056	T	A	SNP	AR	NM_000044	human	genbank	54_36p	1	reviewed	missense	c.2185	p.L729I	0.98	HMMPfam_Hormone_recep	HMMPfam_Hormone_recep;HMMPfam_Androgen_recep;HMMPfam_zf-C4;superfamily_Nuclear receptor ligand-binding domain;superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
KIF4A	24137	genome.wustl.edu	36	X	69490214	69490214	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	69490214	69490214	A	G	SNP	KIF4A	NM_012310	human	genbank	54_36p	1	validated	silent	c.1506	p.P502	0.44	NULL	HMMPfam_Kinesin;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLHL4	56062	genome.wustl.edu	36	X	86759705	86759705	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	86759705	86759705	C	A	SNP	KLHL4	NM_057162	human	genbank	54_36p	1	reviewed	missense	c.842	p.P281H	1	NULL	HMMPfam_Kelch_1;superfamily_Galactose oxidase central domain;HMMPfam_BACK;HMMPfam_BTB;superfamily_POZ domain	-	no_errors
LOC643486	643486	genome.wustl.edu	36	X	95479221	95479221	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5181630f-246a-4cb4-88c2-1534b5fb8e37	62d69c6c-457c-40d4-a43a-4aeb93c8bf80	X	95479221	95479221	C	G	SNP	LOC643486	NR_003539	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.97	-	-	-	pseudogene