Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error TARDBP 23435 genome.wustl.edu 36 1 11005039 11005039 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 11005039 11005039 C T SNP TARDBP NM_007375 human genbank 54_36p 1 reviewed missense c.986 p.A329V 1 NULL - - no_errors KCNA3 3738 genome.wustl.edu 36 1 111017553 111017553 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 111017553 111017553 C T SNP KCNA3 NM_002232 human genbank 54_36p -1 reviewed missense c.1402 p.G468S 1 NULL - - no_errors C1orf103 55791 genome.wustl.edu 36 1 111295733 111295733 + Silent SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 111295733 111295733 G C SNP C1orf103 NM_018372 human genbank 54_36p -1 validated silent c.1296 p.T432 NULL - - no_errors HIST2H2BE 8349 genome.wustl.edu 36 1 148124586 148124586 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 148124586 148124586 C G SNP HIST2H2BE NM_003528 human genbank 54_36p -1 reviewed missense c.229 p.E77Q 1 NULL - - no_errors NES 10763 genome.wustl.edu 36 1 154906180 154906180 + Missense_Mutation SNP C C T Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 154906180 154906180 C T SNP NES NM_006617 human genbank 54_36p -1 reviewed missense c.4424 p.G1475D 0.002 NULL HMMPfam_Filament - no_errors OR10J3 441911 genome.wustl.edu 36 1 157550271 157550271 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 157550271 157550271 G A SNP OR10J3 NM_001004467 human genbank 54_36p -1 provisional missense c.803 p.S268F NULL - - no_errors MPZL1 9019 genome.wustl.edu 36 1 166009187 166009187 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 166009187 166009187 C G SNP MPZL1 NM_003953 human genbank 54_36p 1 validated missense c.563 p.A188G 0.94 NULL HMMPfam_V-set;superfamily_Immunoglobulin - no_errors ASTN1 460 genome.wustl.edu 36 1 175268522 175268522 + Silent SNP G G C Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 175268522 175268522 G C SNP ASTN1 NM_004319 human genbank 54_36p -1 validated silent c.558 p.V186 0.625 NULL superfamily_Fibronectin type III,superfamily_EGF/Laminin - no_errors FAM20B 9917 genome.wustl.edu 36 1 177279865 177279865 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 177279865 177279865 T G SNP FAM20B NM_014864 human genbank 54_36p 1 validated missense c.260 p.V87G 1 NULL - - no_errors DHX9 1660 genome.wustl.edu 36 1 181112227 181112227 + Silent SNP A A G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 181112227 181112227 A G SNP DHX9 NM_001357 human genbank 54_36p 1 reviewed silent c.2052 p.L684 0.98 HMMPfam_Helicase_C HMMPfam_dsrm;HMMPfam_Helicase_C;HMMPfam_HA2;HMMPfam_DEAD;HMMPfam_DUF1605;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_dsRNA-binding domain-like - no_errors RGL1 23179 genome.wustl.edu 36 1 182147925 182147925 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 182147925 182147925 G C SNP RGL1 NM_015149 human genbank 54_36p 1 validated missense c.1754 p.S585T 1 NULL HMMPfam_RA;HMMPfam_RasGEF_N;HMMPfam_RasGEF;superfamily_Ras GEF;superfamily_Ubiquitin-like - no_errors C1orf26 54823 genome.wustl.edu 36 1 183410550 183410550 + Silent SNP C C T Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 183410550 183410550 C T SNP C1orf26 NM_001105518 human genbank 54_36p 1 validated silent c.648 p.N216 0 NULL - - no_errors HMCN1 83872 genome.wustl.edu 36 1 184159201 184159201 + Missense_Mutation SNP G G A Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 184159201 184159201 G A SNP HMCN1 NM_031935 human genbank 54_36p 1 reviewed missense c.1078 p.D360N 1 NULL - - no_errors UBR4 23352 genome.wustl.edu 36 1 19316494 19316494 + Missense_Mutation SNP T T A Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 19316494 19316494 T A SNP UBR4 NM_020765 human genbank 54_36p -1 validated missense c.10631 p.Y3544F 1 NULL - - no_errors AVPR1B 553 genome.wustl.edu 36 1 204391626 204391626 + Missense_Mutation SNP C C A Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 204391626 204391626 C A SNP AVPR1B NM_000707 human genbank 54_36p 1 reviewed missense c.563 p.A188E 0.997 NULL - - no_errors RYR2 6262 genome.wustl.edu 36 1 235722886 235722886 + Missense_Mutation SNP G G A Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 235722886 235722886 G A SNP RYR2 NM_001035 human genbank 54_36p 1 reviewed missense c.1837 p.V613I 0.975 HMMPfam_RYDR_ITPR HMMPfam_RYDR_ITPR,HMMPfam_efhand,HMMPfam_RyR,HMMPfam_MIR,HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,superfamily_EF-hand,superfamily_MIR domain (Pfam 02815) - no_errors RYR2 6262 genome.wustl.edu 36 1 235947258 235947258 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 235947258 235947258 G C SNP RYR2 NM_001035 human genbank 54_36p 1 reviewed missense c.10461 p.E3487D 0.99 HMMPfam_RIH_assoc HMMPfam_RYDR_ITPR;HMMPfam_efhand;HMMPfam_RyR;HMMPfam_MIR;HMMPfam_SPRY;HMMPfam_Ion_trans;HMMPfam_RR_TM4-6;HMMPfam_RIH_assoc;HMMPfam_Ins145_P3_rec;superfamily_EF-hand;superfamily_MIR domain (Pfam 02815) - no_errors KIF26B 55083 genome.wustl.edu 36 1 243770848 243770848 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 243770848 243770848 G C SNP KIF26B NM_018012 human genbank 54_36p 1 provisional missense c.1323 p.K441N 1 NULL - - no_errors LDLRAP1 26119 genome.wustl.edu 36 1 25753004 25753004 + Silent SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 25753004 25753004 G T SNP LDLRAP1 NM_015627 human genbank 54_36p 1 reviewed silent c.93 p.L31 1 NULL - - no_errors HCRTR1 3061 genome.wustl.edu 36 1 31857836 31857836 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 31857836 31857836 G T SNP HCRTR1 NM_001525 human genbank 54_36p 1 reviewed missense c.316 p.V106L 1 NULL - - no_errors LOC128192 128192 genome.wustl.edu 36 1 45226714 45226714 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 45226714 45226714 G A SNP LOC128192 XM_060887 human genbank 54_36p -1 model missense c.271 p.H91Y 1 NULL - - no_errors SLC5A9 200010 genome.wustl.edu 36 1 48477635 48477635 + Silent SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 48477635 48477635 C T SNP SLC5A9 NM_001011547 human genbank 54_36p 1 validated silent c.1570 p.L524 1 NULL - - no_errors CDCP2 200008 genome.wustl.edu 36 1 54378331 54378331 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 54378331 54378331 T A SNP CDCP2 NM_201546 human genbank 54_36p -1 provisional missense c.800 p.N267I 1 NULL - - no_errors CYP2J2 1573 genome.wustl.edu 36 1 60131951 60131951 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 60131951 60131951 G T SNP CYP2J2 NM_000775 human genbank 54_36p -1 reviewed missense c.1469 p.S490Y 0.07 HMMPfam_p450 HMMPfam_p450;superfamily_Cytochrome P450 - no_errors KANK4 163782 genome.wustl.edu 36 1 62509743 62509743 + Silent SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 62509743 62509743 G A SNP KANK4 NM_181712 human genbank 54_36p -1 validated silent c.2007 p.N669 1 NULL - - no_errors C10orf119 79892 genome.wustl.edu 36 10 121609371 121609371 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 10 121609371 121609371 T A SNP C10orf119 NM_024834 human genbank 54_36p -1 validated missense c.74 p.N25I 0.98 NULL - - no_errors PIP4K2A 5305 genome.wustl.edu 36 10 22866155 22866155 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 10 22866155 22866155 A T SNP PIP4K2A NM_005028 human genbank 54_36p -1 reviewed missense c.1202 p.I401N 1 NULL HMMPfam_PIP5K;superfamily_SAICAR synthase-like - no_errors PARG 8505 genome.wustl.edu 36 10 50757751 50757751 + Silent SNP A A G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 10 50757751 50757751 A G SNP PARG ENST00000402038 human ensembl 54_36p -1 known silent c.1962 p.S654 1 NULL - - no_errors ARID5B 84159 genome.wustl.edu 36 10 63486945 63486945 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 10 63486945 63486945 T G SNP ARID5B NM_032199 human genbank 54_36p 1 validated missense c.910 p.S304A 0.98 NULL - - no_errors ARHGAP20 57569 genome.wustl.edu 36 11 109958322 109958322 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 109958322 109958322 A T SNP ARHGAP20 NM_020809 human genbank 54_36p -1 validated missense c.1653 p.F551L 1 NULL - - no_errors HSPB2 3316 genome.wustl.edu 36 11 111289671 111289671 + Silent SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 111289671 111289671 C A SNP HSPB2 NM_001541 human genbank 54_36p 1 validated silent c.391 p.R131 1 HMMPfam_HSP20 HMMPfam_HSP20;superfamily_HSP20-like chaperones - no_errors MLL 4297 genome.wustl.edu 36 11 117869054 117869054 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 117869054 117869054 G C SNP MLL NM_005933 human genbank 54_36p 1 validated missense c.5068 p.D1690H 1 NULL - - no_errors VPS11 55823 genome.wustl.edu 36 11 118453922 118453922 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 118453922 118453922 G A SNP VPS11 ENST00000300793 human ensembl 54_36p 1 known missense c.1694 p.G565E 0.49 NULL HMMPfam_zf-C3HC4;superfamily_WD40 repeat-like;superfamily_ARM repeat;superfamily_Protein prenylyltransferase;superfamily_RING/U-box - no_errors OR4D5 219875 genome.wustl.edu 36 11 123316252 123316252 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 123316252 123316252 G C SNP OR4D5 NM_001001965 human genbank 54_36p 1 provisional missense c.719 p.C240S 1 NULL - - no_errors FSHB 2488 genome.wustl.edu 36 11 30211747 30211747 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 30211747 30211747 A G SNP FSHB NM_000510 human genbank 54_36p 1 reviewed missense c.214 p.K72E 1 HMMPfam_Cys_knot HMMPfam_Cys_knot,superfamily_Cystine-knot cytokines - no_errors OR5T1 390155 genome.wustl.edu 36 11 55800327 55800327 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 55800327 55800327 T C SNP OR5T1 NM_001004745 human genbank 54_36p 1 provisional missense c.637 p.Y213H 0.001 NULL - - no_errors FAM111B 374393 genome.wustl.edu 36 11 58649138 58649138 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 58649138 58649138 G A SNP FAM111B NM_198947 human genbank 54_36p 1 validated missense c.992 p.S331N NULL superfamily_Trypsin-like serine proteases - no_errors MS4A1 931 genome.wustl.edu 36 11 59987071 59987071 + Silent SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 59987071 59987071 G T SNP MS4A1 NM_021950 human genbank 54_36p 1 reviewed silent c.180 p.G60 1 HMMPfam_CD20 HMMPfam_CD20 - no_errors ROM1 6094 genome.wustl.edu 36 11 62137886 62137886 + Missense_Mutation SNP G G A Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 62137886 62137886 G A SNP ROM1 NM_000327 human genbank 54_36p 1 reviewed missense c.557 p.R186H 1 HMMPfam_Tetraspannin HMMPfam_Tetraspannin,superfamily_Tetraspanin - no_errors DNHD1 144132 genome.wustl.edu 36 11 6486753 6486753 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 6486753 6486753 G C SNP DNHD1 NM_173589 human genbank 54_36p 1 validated missense c.988 p.G330R 1 NULL - - no_errors SWAP70 23075 genome.wustl.edu 36 11 9726064 9726064 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 9726064 9726064 C T SNP SWAP70 NM_015055 human genbank 54_36p 1 validated missense c.1439 p.A480V 0.98 NULL HMMPfam_PH;superfamily_EF-hand;superfamily_PH domain-like - no_errors CLEC9A 283420 genome.wustl.edu 36 12 10098181 10098181 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 12 10098181 10098181 G C SNP CLEC9A NM_207345 human genbank 54_36p 1 provisional missense c.136 p.G46R 0.053 NULL - - no_errors C12orf59 120939 genome.wustl.edu 36 12 10223492 10223492 + Silent SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 12 10223492 10223492 C T SNP C12orf59 NM_153022 human genbank 54_36p 1 validated silent c.36 p.S12 0.95 NULL - - no_errors ALDH2 217 genome.wustl.edu 36 12 110712635 110712635 + Silent SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 12 110712635 110712635 C G SNP ALDH2 NM_000690 human genbank 54_36p 1 reviewed silent c.567 p.L189 0.99 HMMPfam_Aldedh HMMPfam_Aldedh;superfamily_ALDH-like - no_errors OR10AD1 121275 genome.wustl.edu 36 12 46882923 46882923 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 12 46882923 46882923 C G SNP OR10AD1 NM_001004134 human genbank 54_36p -1 provisional missense c.420 p.K140N 0.63 NULL - - no_errors KCNA5 3741 genome.wustl.edu 36 12 5024759 5024759 + Silent SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 12 5024759 5024759 C A SNP KCNA5 NM_002234 human genbank 54_36p 1 reviewed silent c.1185 p.S395 1 HMMPfam_Ion_trans HMMPfam_K_tetra;HMMPfam_Ion_trans;superfamily_POZ domain;superfamily_Voltage-gated potassium channels - no_errors ANO2 57101 genome.wustl.edu 36 12 5786740 5786740 + Silent SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 12 5786740 5786740 G A SNP ANO2 NM_020373 human genbank 54_36p -1 validated silent c.939 p.D313 0.98 NULL - - no_errors SLC17A8 246213 genome.wustl.edu 36 12 99338033 99338033 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 12 99338033 99338033 C A SNP SLC17A8 NM_139319 human genbank 54_36p 1 validated missense c.1735 p.Q579K 1 NULL HMMPfam_MFS_1;superfamily_MFS general substrate transporter - no_errors ERCC5 2073 genome.wustl.edu 36 13 102326188 102326188 + Silent SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 13 102326188 102326188 C T SNP ERCC5 NM_000123 human genbank 54_36p 1 reviewed silent c.3495 p.A1165 1 NULL HMMPfam_XPG_N;HMMPfam_XPG_I;superfamily_5' to 3' exonuclease C-terminal subdomain;superfamily_PIN domain-like - no_errors C13orf26 122046 genome.wustl.edu 36 13 30424879 30424879 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 13 30424879 30424879 A C SNP C13orf26 NM_152325 human genbank 54_36p 1 predicted missense c.229 p.T77P 0.07 NULL - - no_errors BRCA2 675 genome.wustl.edu 36 13 31810708 31810711 + Frame_Shift_Del DEL AAAG AAAG - novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 AAAG AAAG AAAG - AAAG AAAG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 13 31810708 31810711 AAAG - DEL BRCA2 NM_000059 human genbank 54_36p 1 reviewed frame_shift_del c.4216_4219 p.K1406fs 0.382:0.373:0.386:0.064 NULL superfamily_Nucleic acid-binding proteins;superfamily_BRCA2 helical domain;superfamily_BRCA2 tower domain;BRCA2;HMMPfam_BRCA2;BRCA-2_OB1;HMMPfam_BRCA-2_OB1;BRCA-2_OB3;HMMPfam_BRCA-2_OB3;Tower;HMMPfam_Tower;BRCA-2_helical;HMMPfam_BRCA-2_helical (deletion:cds_exon[31808402;31813333]) no_errors TRIM13 10206 genome.wustl.edu 36 13 49485278 49485278 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 13 49485278 49485278 G T SNP TRIM13 NM_001007278 human genbank 54_36p 1 reviewed missense c.1210 p.V404L 1 NULL - - no_errors CLN5 1203 genome.wustl.edu 36 13 76468169 76468169 + Silent SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 13 76468169 76468169 C T SNP CLN5 NM_006493 human genbank 54_36p 1 reviewed silent c.618 p.F206 1 NULL - - no_errors MYCBP2 23077 genome.wustl.edu 36 13 76696612 76696612 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 13 76696612 76696612 G C SNP MYCBP2 NM_015057 human genbank 54_36p -1 validated missense c.2800 p.L934V 1 HMMPfam_RCC1 HMMPfam_RCC1;superfamily_Galactose-binding domain-like;superfamily_RCC1/BLIP-II;HMMPfam_PHR;superfamily_E set domains;superfamily_ARM repeat;superfamily_RING/U-box - no_errors IRF9 10379 genome.wustl.edu 36 14 23702488 23702488 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 14 23702488 23702488 G T SNP IRF9 NM_006084 human genbank 54_36p 1 validated missense c.426 p.R142S 0.01 NULL - - no_errors RAB15 376267 genome.wustl.edu 36 14 64486834 64486834 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 14 64486834 64486834 C A SNP RAB15 NM_198686 human genbank 54_36p -1 validated missense c.507 p.R169S 1 NULL HMMPfam_Ras;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors PABPC1P2 728773 genome.wustl.edu 36 2 147062571 147062571 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 2 147062571 147062571 A C SNP PABPCP2 ENST00000359464 human ensembl 54_36p 1 known missense c.561 p.L187F 1 NULL - - no_errors GABRA5 2558 genome.wustl.edu 36 15 24679590 24679590 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 15 24679590 24679590 A T SNP GABRA5 ENST00000335625 human ensembl 54_36p 1 known missense c.290 p.D97V 1 HMMPfam_Neur_chan_LBD HMMPfam_Neur_chan_memb,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,superfamily_SSF90112 - no_errors UNC13C 440279 genome.wustl.edu 36 15 52094558 52094558 + Silent SNP A A C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 15 52094558 52094558 A C SNP UNC13C NM_001080534 human genbank 54_36p 1 provisional silent c.2166 p.P722 1 NULL - - no_errors ERN2 10595 genome.wustl.edu 36 16 23619433 23619433 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 16 23619433 23619433 C T SNP ERN2 NM_033266 human genbank 54_36p -1 validated missense c.1597 p.G533R 0.002 NULL HMMPfam_Pkinase,HMMPfam_PQQ,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like - no_errors ZNF764 92595 genome.wustl.edu 36 16 30474709 30474709 + Silent SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 16 30474709 30474709 G A SNP ZNF764 NM_033410 human genbank 54_36p -1 provisional silent c.534 p.Y178 0.001 NULL - - no_errors EXOC3L 283849 genome.wustl.edu 36 16 65778461 65778461 + Missense_Mutation SNP A A C Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A C A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 16 65778461 65778461 A C SNP EXOC3L NM_178516 human genbank 54_36p -1 validated missense c.1122 p.I374M 0.504 HMMPfam_Sec6 HMMPfam_Sec6 - no_errors MYH4 4622 genome.wustl.edu 36 17 10291097 10291097 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 17 10291097 10291097 C A SNP MYH4 NM_017533 human genbank 54_36p -1 validated missense c.5127 p.E1709D 1 HMMPfam_Myosin_tail_1 HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Prefoldin;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors MYH2 4620 genome.wustl.edu 36 17 10368869 10368869 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 17 10368869 10368869 T A SNP MYH2 NM_001100112 human genbank 54_36p -1 validated missense c.4901 p.Q1634L 1 NULL - - no_errors CAMTA2 23125 genome.wustl.edu 36 17 4826908 4826908 + Silent SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 17 4826908 4826908 A T SNP CAMTA2 NM_015099 human genbank 54_36p -1 reviewed silent c.207 p.P69 1 HMMPfam_CG-1 HMMPfam_IQ;HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_TIG;HMMPfam_CG-1;superfamily_E set domains;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors SENP3 26168 genome.wustl.edu 36 17 7409800 7409800 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 17 7409800 7409800 G A SNP SENP3 ENST00000321337 human ensembl 54_36p 1 known missense c.1258 p.E420K 1 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7519217 7519217 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 17 7519217 7519217 C T SNP TP53 NM_000546 human genbank 54_36p -1 reviewed nonsense c.438 p.W146* 0.95 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors ENPP7 339221 genome.wustl.edu 36 17 75319602 75319602 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 17 75319602 75319602 G C SNP ENPP7 NM_178543 human genbank 54_36p 1 validated missense c.106 p.V36L 0.78 HMMPfam_Phosphodiest HMMPfam_Phosphodiest;superfamily_Alkaline phosphatase-like - no_errors CARD14 79092 genome.wustl.edu 36 17 75783617 75783617 + Silent SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 17 75783617 75783617 C A SNP CARD14 NM_024110 human genbank 54_36p 1 reviewed silent c.1389 p.S463 0.841 NULL HMMPfam_CARD,superfamily_PDZ domain-like,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors DNAH2 146754 genome.wustl.edu 36 17 7578653 7578653 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 17 7578653 7578653 C G SNP DNAH2 NM_020877 human genbank 54_36p 1 validated missense c.880 p.Q294E 1 HMMPfam_DHC_N1 HMMPfam_Dynein_heavy;HMMPfam_AAA_5;HMMPfam_DHC_N1;HMMPfam_DHC_N2;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors DTNA 1837 genome.wustl.edu 36 18 30652245 30652245 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 18 30652245 30652245 G C SNP DTNA NM_001390 human genbank 54_36p 1 reviewed missense c.829 p.G277R 0.98 NULL - - no_errors LAMA1 284217 genome.wustl.edu 36 18 6989910 6989910 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 18 6989910 6989910 C T SNP LAMA1 NM_005559 human genbank 54_36p -1 validated missense c.4469 p.R1490K 1 HMMPfam_Laminin_EGF superfamily_EGF/Laminin;HMMPfam_Laminin_B;HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Galactose-binding domain-like;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_I;HMMPfam_Laminin_II;HMMPfam_Laminin_G_1;HMMPfam_Laminin_G_2;superfamily_Spectrin repeat - no_errors LAMA1 284217 genome.wustl.edu 36 18 7005726 7005726 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 18 7005726 7005726 A T SNP LAMA1 NM_005559 human genbank 54_36p -1 validated missense c.3121 p.C1041S 1 HMMPfam_Laminin_EGF superfamily_EGF/Laminin;HMMPfam_Laminin_B;HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Galactose-binding domain-like;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_I;HMMPfam_Laminin_II;HMMPfam_Laminin_G_1;HMMPfam_Laminin_G_2;superfamily_Spectrin repeat - no_errors LOC100132918 100132918 genome.wustl.edu 36 3 183661550 183661550 + RNA SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 3 183661550 183661550 G A SNP LOC100132918 XR_042313 human genbank 54_36p -1 model rna NULL NULL 0.08 - - - pseudogene TMED1 11018 genome.wustl.edu 36 19 10806651 10806651 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 19 10806651 10806651 C T SNP TMED1 NM_006858 human genbank 54_36p -1 reviewed missense c.424 p.E142K 1 NULL HMMPfam_EMP24_GP25L,superfamily_Supernatant protein factor (SPF) C-terminal domain - no_errors MLL4 9757 genome.wustl.edu 36 19 40915407 40915407 + Nonstop_Mutation SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 19 40915407 40915407 G T SNP MLL4 NM_014727 human genbank 54_36p 1 reviewed nonstop c.6116 p.*2039L 1 NULL AT_hook,HMMPfam_AT_hook,SET,HMMPfam_SET,PHD,HMMPfam_PHD,zf-CXXC,HMMPfam_zf-CXXC,FYRN,HMMPfam_FYRN,FYRC,HMMPfam_FYRC - pseudogene:no_stop_codon:bad_bp_length_for_coding_region BCL3 602 genome.wustl.edu 36 19 49951375 49951375 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 19 49951375 49951375 C T SNP BCL3 NM_005178 human genbank 54_36p 1 reviewed missense c.433 p.R145W 0.08 NULL - - no_errors CCDC8 83987 genome.wustl.edu 36 19 51607719 51607719 + Silent SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 19 51607719 51607719 G A SNP CCDC8 NM_032040 human genbank 54_36p -1 validated silent c.189 p.T63 1 NULL - - no_errors DHX34 9704 genome.wustl.edu 36 19 52548654 52548654 + Missense_Mutation SNP A A C Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A C A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 19 52548654 52548654 A C SNP DHX34 NM_014681 human genbank 54_36p 1 reviewed missense c.527 p.K176T 0.002 NULL HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_C2H2 and C2HC zinc fingers - no_errors SULT2A1 6822 genome.wustl.edu 36 19 53078738 53078738 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 19 53078738 53078738 T C SNP SULT2A1 NM_003167 human genbank 54_36p -1 validated missense c.253 p.T85A HMMPfam_Sulfotransfer_1 HMMPfam_Sulfotransfer_1;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors SLC6A16 28968 genome.wustl.edu 36 19 54504404 54504404 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 19 54504404 54504404 G A SNP SLC6A16 NM_014037 human genbank 54_36p -1 validated missense c.953 p.A318V 0.01 NULL - - no_errors HAS1 3036 genome.wustl.edu 36 19 56911381 56911381 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 19 56911381 56911381 C T SNP HAS1 NM_001523 human genbank 54_36p -1 reviewed missense c.1001 p.C334Y 1 NULL HMMPfam_Glycos_transf_2;superfamily_Nucleotide-diphospho-sugar transferases - no_errors LAIR1 3903 genome.wustl.edu 36 19 59559781 59559786 + In_Frame_Del DEL GCTGTG GCTGTG - novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 GCTGTG GCTGTG GCTGTG - GCTGTG GCTGTG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 19 59559781 59559786 GCTGTG - DEL LAIR1 NM_002287 human genbank 54_36p -1 reviewed in_frame_del c.622_617 p.PQ206in_frame_del 0.897:0.870:0.822:0.576:0.003:0.000 NULL superfamily_Immunoglobulin (deletion:cds_exon[59559777;59559819]) no_errors DPP10 57628 genome.wustl.edu 36 2 116236628 116236628 + Missense_Mutation SNP T T C Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T C T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 2 116236628 116236628 T C SNP DPP10 NM_020868 human genbank 54_36p 1 reviewed missense c.1085 p.M362T 0.998 NULL - - no_errors GRB14 2888 genome.wustl.edu 36 2 165057926 165057926 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 2 165057926 165057926 C A SNP GRB14 NM_004490 human genbank 54_36p -1 reviewed missense c.1489 p.G497C 1 HMMPfam_SH2 RA;HMMPfam_RA;SH2;HMMPfam_SH2;PH;HMMPfam_PH;BPS;HMMPfam_BPS - no_errors TTN 7273 genome.wustl.edu 36 2 179115333 179115333 + Silent SNP C C T rs55915651 Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 2 179115333 179115333 C T SNP TTN NM_133378 human genbank 54_36p -1 reviewed silent c.89691 p.P29897 1 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region TTN 7273 genome.wustl.edu 36 2 179348920 179348920 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 2 179348920 179348920 T A SNP TTN NM_133378 human genbank 54_36p -1 reviewed missense c.5916 p.E1972D 0.98 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region KCNK3 3777 genome.wustl.edu 36 2 26804447 26804447 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 2 26804447 26804447 G T SNP KCNK3 NM_002246 human genbank 54_36p 1 reviewed missense c.692 p.G231V 1 HMMPfam_Ion_trans_2 HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels - no_errors ERLEC1 27248 genome.wustl.edu 36 2 53882353 53882353 + Splice_Site SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 2 53882353 53882353 G A SNP C2orf30 NM_015701 human genbank 54_36p 1 validated splice_site c.750-1 e8-1 1 - - - no_errors ADRA2B 151 genome.wustl.edu 36 2 96145154 96145154 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 2 96145154 96145154 C A SNP ADRA2B NM_000682 human genbank 54_36p -1 reviewed missense c.462 p.Q154H 0.19 NULL - - no_errors MRPL30 51263 genome.wustl.edu 36 2 99178516 99178516 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 2 99178516 99178516 G T SNP MRPL30 NM_145212 human genbank 54_36p 1 reviewed missense c.402 p.M134I 1 NULL - - no_errors AFF3 3899 genome.wustl.edu 36 2 99541778 99541778 + Silent SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 2 99541778 99541778 G A SNP AFF3 NM_001025108 human genbank 54_36p -1 reviewed silent c.3351 p.D1117 1 HMMPfam_AF-4 HMMPfam_AF-4 - no_errors CSRP2BP 57325 genome.wustl.edu 36 20 18090728 18090728 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 20 18090728 18090728 G C SNP CSRP2BP NM_020536 human genbank 54_36p 1 reviewed missense c.947 p.S316T 1 NULL HMMPfam_Acetyltransf_1;superfamily_Six-hairpin glycosidases;superfamily_Acyl-CoA N-acyltransferases (Nat) - no_errors DEFB115 245929 genome.wustl.edu 36 20 29309134 29309134 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 20 29309134 29309134 C A SNP DEFB115 NM_001037730 human genbank 54_36p 1 provisional missense c.7 p.P3T 0.01 NULL - - no_errors HCK 3055 genome.wustl.edu 36 20 30145462 30145462 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 20 30145462 30145462 G A SNP HCK NM_002110 human genbank 54_36p 1 reviewed missense c.1228 p.E410K 1 HMMPfam_Pkinase_Tyr SH2;HMMPfam_SH2;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;SH3_1;HMMPfam_SH3_1 - no_errors C20orf185 359710 genome.wustl.edu 36 20 31110938 31110938 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 20 31110938 31110938 G A SNP C20orf185 NM_182658 human genbank 54_36p 1 provisional missense c.375 p.M125I 1 NULL - - no_errors C20orf185 359710 genome.wustl.edu 36 20 31120375 31120375 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 20 31120375 31120375 G A SNP C20orf185 NM_182658 human genbank 54_36p 1 provisional missense c.1084 p.A362T 0.44 NULL - - no_errors BPI 671 genome.wustl.edu 36 20 36366093 36366093 + Silent SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 20 36366093 36366093 C T SNP BPI NM_001725 human genbank 54_36p 1 reviewed silent c.66 p.V22 0.17 NULL - - no_errors STAU1 6780 genome.wustl.edu 36 20 47185799 47185799 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 20 47185799 47185799 C T SNP STAU1 NM_017453 human genbank 54_36p -1 reviewed missense c.587 p.R196Q 1 NULL - - no_errors TSHZ2 128553 genome.wustl.edu 36 20 51305318 51305318 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 20 51305318 51305318 A C SNP TSHZ2 NM_173485 human genbank 54_36p 1 validated missense c.1914 p.E638D 0.28 NULL - - no_errors USP25 29761 genome.wustl.edu 36 21 16164305 16164305 + Silent SNP C C G Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 21 16164305 16164305 C G SNP USP25 NM_013396 human genbank 54_36p 1 validated silent c.2643 p.L881 0.998 NULL HMMPfam_UBA,HMMPfam_UCH,HMMPfam_UIM,superfamily_UBA-like,superfamily_Cysteine proteinases - no_errors DERL3 91319 genome.wustl.edu 36 22 22509304 22509304 + Silent SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 22 22509304 22509304 G A SNP DERL3 NM_001002862 human genbank 54_36p -1 reviewed silent c.561 p.D187 0.99 HMMPfam_DER1 HMMPfam_DER1 - no_errors UPB1 51733 genome.wustl.edu 36 22 23239450 23239450 + Silent SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 22 23239450 23239450 C T SNP UPB1 NM_016327 human genbank 54_36p 1 reviewed silent c.618 p.N206 0.99 HMMPfam_CN_hydrolase HMMPfam_CN_hydrolase;superfamily_Carbon-nitrogen hydrolase - no_errors SNRPD3 6634 genome.wustl.edu 36 22 23283654 23283654 + Silent SNP T T C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 22 23283654 23283654 T C SNP SNRPD3 NM_004175 human genbank 54_36p 1 reviewed silent c.12 p.G4 1 NULL - - no_errors DCBLD2 131566 genome.wustl.edu 36 3 100051033 100051033 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 3 100051033 100051033 C A SNP DCBLD2 NM_080927 human genbank 54_36p -1 validated missense c.533 p.R178L 1 HMMPfam_CUB HMMPfam_F5_F8_type_C;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_LCCL;superfamily_Galactose-binding domain-like;superfamily_LCCL domain - no_errors ZBTB38 253461 genome.wustl.edu 36 3 142645875 142645875 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 3 142645875 142645875 G A SNP ZBTB38 NM_001080412 human genbank 54_36p 1 validated missense c.1955 p.G652D NULL - - no_errors TRA2B 6434 genome.wustl.edu 36 3 187126095 187126095 + Missense_Mutation SNP T T C Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T C T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 3 187126095 187126095 T C SNP TRA2B NM_004593 human genbank 54_36p -1 validated missense c.184 p.R62G 1 NULL - - no_errors HHATL 57467 genome.wustl.edu 36 3 42709260 42709260 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 3 42709260 42709260 T C SNP HHATL NM_020707 human genbank 54_36p -1 provisional missense c.1502 p.E501G 1 NULL HMMPfam_MBOAT - no_errors RBM6 10180 genome.wustl.edu 36 3 49980091 49980091 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 3 49980091 49980091 G T SNP RBM6 NM_005777 human genbank 54_36p 1 provisional missense c.229 p.A77S 1 NULL HMMPfam_G-patch;superfamily_RNA-binding domain RBD;superfamily_C2H2 and C2HC zinc fingers;superfamily_NZF domain - no_errors GNAI2 2771 genome.wustl.edu 36 3 50265496 50265496 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 3 50265496 50265496 G A SNP GNAI2 NM_002070 human genbank 54_36p 1 validated missense c.340 p.A114T 1 HMMPfam_G-alpha HMMPfam_G-alpha;superfamily_Transducin (alpha subunit) insertion domain;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors ADAMTS9 56999 genome.wustl.edu 36 3 64581896 64581896 + Missense_Mutation SNP T G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T G T T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 3 64581896 64581896 T G SNP ADAMTS9 NM_182920 human genbank 54_36p -1 reviewed missense c.2747 p.Q916P 1 NULL "HMMPfam_TSP_1;HMMPfam_Reprolysin;HMMPfam_Pep_M12B_propep;HMMPfam_ADAM_spacer1;HMMPfam_GON;superfamily_Metalloproteases (""zincins"") catalytic domain;superfamily_TSP-1 type 1 repeat" - no_errors THUMPD3 25917 genome.wustl.edu 36 3 9387893 9387893 + Silent SNP T T C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 3 9387893 9387893 T C SNP THUMPD3 NM_015453 human genbank 54_36p 1 validated silent c.480 p.N160 0.067 NULL - - no_errors ANK2 287 genome.wustl.edu 36 4 114434045 114434045 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 4 114434045 114434045 A T SNP ANK2 NM_001148 human genbank 54_36p 1 reviewed missense c.2377 p.N793Y 1 HMMPfam_Ank HMMPfam_Death;HMMPfam_ZU5;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_DEATH domain - no_errors C4orf42 92070 genome.wustl.edu 36 4 1234461 1234461 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 4 1234461 1234461 A T SNP C4orf42 NM_052861 human genbank 54_36p 1 validated missense c.100 p.R34W 0.007 NULL - - no_errors UCP1 7350 genome.wustl.edu 36 4 141700559 141700559 + Missense_Mutation SNP A A G Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A G A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 4 141700559 141700559 A G SNP UCP1 NM_021833 human genbank 54_36p -1 reviewed missense c.865 p.F289L 1 NULL - - no_errors ZNF718 255403 genome.wustl.edu 36 4 145370 145370 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 4 145370 145370 A C SNP ZNF718 ENST00000400172 human ensembl 54_36p 1 known missense c.234 p.L78F NULL - - no_errors LOC90826 90826 genome.wustl.edu 36 4 148814343 148814343 + Silent SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 4 148814343 148814343 A T SNP LOC90826 NM_138364 human genbank 54_36p -1 predicted silent c.471 p.L157 0.99 NULL - - no_errors LOC391722 391722 genome.wustl.edu 36 4 185457678 185457678 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 4 185457678 185457678 G C SNP LOC391722 XM_373042 human genbank 54_36p -1 model missense c.732 p.N244K 1 NULL - - no_errors SCFD2 152579 genome.wustl.edu 36 4 53926396 53926396 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 4 53926396 53926396 G A SNP SCFD2 NM_152540 human genbank 54_36p -1 validated missense c.470 p.P157L 1 NULL - - no_errors LPHN3 23284 genome.wustl.edu 36 4 62483220 62483220 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 4 62483220 62483220 C G SNP LPHN3 NM_015236 human genbank 54_36p 1 reviewed missense c.1976 p.T659R 0.53 NULL - - no_errors PARM1 25849 genome.wustl.edu 36 4 76156925 76156925 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 4 76156925 76156925 C G SNP DKFZP564O0823 NM_015393 human genbank 54_36p 1 validated missense c.310 p.P104A 0.01 NULL - - no_errors ENSG00000186223 0 genome.wustl.edu 36 11 4220394 4220394 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 11 4220394 4220394 C A SNP ENSG00000186223 ENST00000334071 human ensembl 54_36p -1 known missense c.53 p.R18M 1 NULL superfamily_Phosphotyrosine protein phosphatases I;HMMPfam_Ssu72 - no_errors FBN2 2201 genome.wustl.edu 36 5 127698789 127698789 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 5 127698789 127698789 C T SNP FBN2 NM_001999 human genbank 54_36p -1 reviewed missense c.3945 p.M1315I 1 HMMPfam_EGF_CA HMMPfam_EGF_CA;superfamily_Cadherin-like;superfamily_EGF/Laminin;superfamily_TB module/8-cys domain;HMMPfam_TB;HMMPfam_EGF;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Growth factor receptor domain - no_errors DNAH5 1767 genome.wustl.edu 36 5 13822720 13822720 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 5 13822720 13822720 T G SNP DNAH5 NM_001369 human genbank 54_36p -1 validated missense c.9610 p.N3204H 1 NULL - - no_errors TIGD6 81789 genome.wustl.edu 36 5 149354791 149354791 + Silent SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 5 149354791 149354791 G A SNP TIGD6 NM_030953 human genbank 54_36p -1 validated silent c.1314 p.D438 0.03 NULL - - no_errors MAML1 9794 genome.wustl.edu 36 5 179125186 179125186 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 5 179125186 179125186 G A SNP MAML1 NM_014757 human genbank 54_36p 1 reviewed missense c.569 p.R190H 1 NULL - - no_errors CDH10 1008 genome.wustl.edu 36 5 24629198 24629198 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 5 24629198 24629198 T A SNP CDH10 NM_006727 human genbank 54_36p -1 reviewed missense c.159 p.K53N 1 NULL HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors AGXT2 64902 genome.wustl.edu 36 5 35083713 35083713 + Silent SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 5 35083713 35083713 C G SNP AGXT2 NM_031900 human genbank 54_36p -1 reviewed silent c.42 p.L14 NULL HMMPfam_Aminotran_3;superfamily_PLP-dependent transferases - no_errors IL7R 3575 genome.wustl.edu 36 5 35912193 35912193 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 5 35912193 35912193 A G SNP IL7R NM_002185 human genbank 54_36p 1 reviewed missense c.1228 p.T410A NULL fn3;HMMPfam_fn3 - no_errors RNF138P1 379013 genome.wustl.edu 36 5 54862119 54862119 + RNA SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 5 54862119 54862119 G A SNP RNF138P1 NR_001575 human genbank 54_36p -1 provisional rna NULL NULL 1 - - - pseudogene SREK1IP1 285672 genome.wustl.edu 36 5 64072705 64072705 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 5 64072705 64072705 G C SNP SFRS12IP1 NM_173829 human genbank 54_36p -1 validated missense c.140 p.T47R 1 NULL - - no_errors IQGAP2 10788 genome.wustl.edu 36 5 75968737 75968737 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 5 75968737 75968737 C A SNP IQGAP2 NM_006633 human genbank 54_36p 1 validated missense c.1903 p.L635I 0.997 NULL - - no_errors MIR298 100126296 genome.wustl.edu 36 20 56826717 56826717 + RNA SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 20 56826717 56826717 C G SNP MIRN298 ENST00000401212 human ensembl 54_36p -1 known rna NULL NULL 0.001 - - - no_errors CAP2 10486 genome.wustl.edu 36 6 17651147 17651147 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 6 17651147 17651147 G T SNP CAP2 NM_006366 human genbank 54_36p 1 reviewed missense c.1103 p.G368V 1 HMMPfam_CAP_C HMMPfam_CAP_C;superfamily_C-terminal domain of adenylylcyclase associated protein;HMMPfam_CAP_N;superfamily_N-terminal domain of adenylylcyclase associated protein CAP - no_errors GRM4 2914 genome.wustl.edu 36 6 34104094 34104094 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 6 34104094 34104094 C A SNP GRM4 NM_000841 human genbank 54_36p -1 reviewed missense c.2470 p.V824F 1 HMMPfam_7tm_3 HMMPfam_7tm_3;HMMPfam_ANF_receptor;HMMPfam_NCD3G;superfamily_MFS general substrate transporter;superfamily_Periplasmic binding protein-like I;superfamily_TNF receptor-like - no_errors PEX6 5190 genome.wustl.edu 36 6 43042245 43042245 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 6 43042245 43042245 G A SNP PEX6 NM_000287 human genbank 54_36p -1 reviewed missense c.2090 p.P697L 1 NULL HMMPfam_AAA;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors HCRTR2 3062 genome.wustl.edu 36 6 55228105 55228105 + Silent SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 6 55228105 55228105 C A SNP HCRTR2 NM_001526 human genbank 54_36p 1 reviewed silent c.615 p.T205 1 NULL - - no_errors DST 667 genome.wustl.edu 36 6 56465184 56465184 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 6 56465184 56465184 C T SNP DST NM_183380 human genbank 54_36p -1 reviewed missense c.13666 p.A4556T 1 NULL - - no_errors KCNQ5 56479 genome.wustl.edu 36 6 73961051 73961051 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 6 73961051 73961051 A T SNP KCNQ5 NM_019842 human genbank 54_36p 1 reviewed missense c.1992 p.K664N 1 NULL HMMPfam_Ion_trans;HMMPfam_KCNQ_channel;superfamily_Voltage-gated potassium channels - no_errors CD109 135228 genome.wustl.edu 36 6 74574673 74574673 + Silent SNP T T G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 6 74574673 74574673 T G SNP CD109 NM_133493 human genbank 54_36p 1 validated silent c.3336 p.T1112 HMMPfam_A2M_comp HMMPfam_A2M;HMMPfam_A2M_N;superfamily_Terpenoid cyclases/Protein prenyltransferases;HMMPfam_A2M_recep;superfamily_Alpha-macroglobulin receptor domain;HMMPfam_A2M_N_2;HMMPfam_A2M_comp - no_errors ZAN 7455 genome.wustl.edu 36 7 100190916 100190916 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 7 100190916 100190916 C A SNP ZAN ENST00000349350 human ensembl 54_36p 1 known missense c.3256 p.H1086N NULL - - no_errors MUC17 140453 genome.wustl.edu 36 7 100468311 100468311 + Silent SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 7 100468311 100468311 C A SNP MUC17 NM_001040105 human genbank 54_36p 1 provisional silent c.6894 p.T2298 NULL HMMPfam_SEA;superfamily_EGF/Laminin;superfamily_SEA domain - no_errors TMEM209 84928 genome.wustl.edu 36 7 129602659 129602659 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 7 129602659 129602659 A T SNP TMEM209 NM_032842 human genbank 54_36p -1 validated missense c.1273 p.S425T 1 NULL - - no_errors C7orf49 78996 genome.wustl.edu 36 7 134502124 134502124 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 7 134502124 134502124 C A SNP C7orf49 NM_024033 human genbank 54_36p -1 validated missense c.169 p.A57S 0.01 NULL - - no_errors PIP 5304 genome.wustl.edu 36 7 142546374 142546374 + Missense_Mutation SNP A A G Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A G A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 7 142546374 142546374 A G SNP PIP NM_002652 human genbank 54_36p 1 validated missense c.286 p.K96E 0 NULL - - no_errors SMARCD3 6604 genome.wustl.edu 36 7 150569567 150569567 + Missense_Mutation SNP T T A Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 7 150569567 150569567 T A SNP SMARCD3 NM_001003801 human genbank 54_36p -1 reviewed missense c.883 p.R295W 1 NULL - - no_errors DNAJB6 10049 genome.wustl.edu 36 7 156871070 156871070 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 7 156871070 156871070 A T SNP DNAJB6 NM_005494 human genbank 54_36p 1 reviewed missense c.695 p.K232M 1 NULL - - no_errors CCDC129 223075 genome.wustl.edu 36 7 31584509 31584509 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 7 31584509 31584509 C G SNP CCDC129 NM_194300 human genbank 54_36p 1 validated missense c.1106 p.T369S 0.005 NULL - - no_errors POLD2 5425 genome.wustl.edu 36 7 44122263 44122263 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 7 44122263 44122263 T C SNP POLD2 NM_006230 human genbank 54_36p -1 validated missense c.995 p.Y332C 1 HMMPfam_DNA_pol_E_B HMMPfam_DNA_pol_E_B - no_errors CYP3A7 1551 genome.wustl.edu 36 7 99152771 99152771 + Silent SNP C C T Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 7 99152771 99152771 C T SNP CYP3A7 NM_000765 human genbank 54_36p -1 reviewed silent c.486 p.R162 0.001 NULL - - no_errors VPS13B 157680 genome.wustl.edu 36 8 100548939 100548939 + Silent SNP T T A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 8 100548939 100548939 T A SNP VPS13B NM_017890 human genbank 54_36p 1 reviewed silent c.3567 p.S1189 1 NULL - - no_errors NACAP1 83955 genome.wustl.edu 36 8 102450494 102450494 + RNA SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 8 102450494 102450494 G A SNP NACAP1 NR_002182 human genbank 54_36p 1 provisional rna NULL NULL 1 - - - pseudogene NACAP1 83955 genome.wustl.edu 36 8 102450697 102450697 + RNA SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 8 102450697 102450697 G C SNP NACAP1 NR_002182 human genbank 54_36p 1 provisional rna NULL NULL 1 - - - pseudogene ODF1 4956 genome.wustl.edu 36 8 103633145 103633145 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 8 103633145 103633145 G C SNP ODF1 NM_024410 human genbank 54_36p 1 reviewed missense c.14 p.S5T 1 NULL superfamily_HSP20-like chaperones - no_errors RP1L1 94137 genome.wustl.edu 36 8 10518051 10518051 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 8 10518051 10518051 G T SNP RP1L1 NM_178857 human genbank 54_36p -1 validated missense c.71 p.T24N NULL HMMPfam_DCX;HMMPfam_S-antigen;superfamily_Doublecortin (DC) - no_errors COL22A1 169044 genome.wustl.edu 36 8 139806843 139806843 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 8 139806843 139806843 A G SNP COL22A1 NM_152888 human genbank 54_36p -1 validated missense c.2162 p.V721A 0.13 HMMPfam_Collagen HMMPfam_VWA;HMMPfam_Collagen;superfamily_Concanavalin A-like lectins/glucanases;superfamily_vWA-like - no_errors UNC5D 137970 genome.wustl.edu 36 8 35660770 35660770 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 8 35660770 35660770 C A SNP UNC5D NM_080872 human genbank 54_36p 1 validated missense c.719 p.A240D 1 NULL - - no_errors RB1CC1 9821 genome.wustl.edu 36 8 53732895 53732895 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 8 53732895 53732895 C T SNP RB1CC1 NM_014781 human genbank 54_36p -1 validated missense c.2047 p.A683T 0.99 NULL superfamily_Prefoldin;superfamily_Ubiquitin-like - no_errors SDR16C5 195814 genome.wustl.edu 36 8 57391337 57391337 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 8 57391337 57391337 T G SNP SDR16C5 NM_138969 human genbank 54_36p -1 validated missense c.124 p.I42L 0.99 NULL - - no_errors CDK5RAP2 55755 genome.wustl.edu 36 9 122273886 122273886 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 9 122273886 122273886 T A SNP CDK5RAP2 NM_018249 human genbank 54_36p -1 reviewed missense c.1819 p.T607S 0.306 NULL HMMPfam_Microtub_assoc - no_errors RABGAP1 23637 genome.wustl.edu 36 9 124791454 124791454 + Silent SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 9 124791454 124791454 C T SNP RABGAP1 NM_012197 human genbank 54_36p 1 validated silent c.432 p.L144 1 NULL - - no_errors FREM1 158326 genome.wustl.edu 36 9 14740192 14740192 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 9 14740192 14740192 G C SNP FREM1 NM_144966 human genbank 54_36p -1 validated missense c.5490 p.N1830K 1 NULL - - no_errors NOL6 65083 genome.wustl.edu 36 9 33456931 33456931 + Silent SNP T T C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 9 33456931 33456931 T C SNP NOL6 NM_022917 human genbank 54_36p -1 reviewed silent c.1929 p.A643 NULL - - no_errors ALDH1A1 216 genome.wustl.edu 36 9 74716766 74716766 + Silent SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 9 74716766 74716766 C T SNP ALDH1A1 NM_000689 human genbank 54_36p -1 reviewed silent c.1128 p.G376 0.99 HMMPfam_Aldedh HMMPfam_Aldedh;superfamily_ALDH-like - no_errors LOC100132553 100132553 genome.wustl.edu 36 8 92239546 92239546 + RNA SNP A A T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 8 92239546 92239546 A T SNP LOC100132553 XR_038881 human genbank 54_36p 1 model rna NULL NULL 0.92 - - - pseudogene uc001dse.1 0 genome.wustl.edu 36 1 99537168 99537168 + Silent SNP T T A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad 1 99537168 99537168 T A SNP uc001dse.1 ENST00000370184 human ensembl 54_36p 1 known silent c.54 p.I18 0.01 NULL - - no_errors BHLHB9 80823 genome.wustl.edu 36 X 101890757 101890757 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 101890757 101890757 G A SNP BHLHB9 NM_030639 human genbank 54_36p 1 validated missense c.178 p.A60T NULL - - no_errors MSL3 10943 genome.wustl.edu 36 X 11691827 11691827 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 11691827 11691827 C T SNP MSL3 NM_078629 human genbank 54_36p 1 reviewed missense c.757 p.L253F 1 NULL - - no_errors BRS3 680 genome.wustl.edu 36 X 135400215 135400215 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 135400215 135400215 C G SNP BRS3 NM_001727 human genbank 54_36p 1 validated missense c.692 p.S231C 0.7 HMMPfam_7tm_1 HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like - no_errors HTATSF1 27336 genome.wustl.edu 36 X 135407517 135407517 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 135407517 135407517 G C SNP HTATSF1 NM_014500 human genbank 54_36p 1 provisional missense c.8 p.G3A 0.634 NULL HMMPfam_RRM_1,superfamily_RNA-binding domain RBD - no_errors CSF2RA 1438 genome.wustl.edu 36 X 1367745 1367745 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 1367745 1367745 G A SNP CSF2RA NM_006140 human genbank 54_36p 1 reviewed missense c.437 p.R146H 0 NULL superfamily_Fibronectin type III - no_errors MAGEA1 4100 genome.wustl.edu 36 X 152135372 152135372 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 152135372 152135372 T A SNP MAGEA1 NM_004988 human genbank 54_36p -1 reviewed missense c.833 p.K278I HMMPfam_MAGE "HMMPfam_MAGE;superfamily_""Winged helix"" DNA-binding domain" - no_errors MAP7D2 256714 genome.wustl.edu 36 X 19938877 19938877 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 19938877 19938877 G A SNP MAP7D2 NM_152780 human genbank 54_36p -1 provisional missense c.2164 p.P722S 1 NULL HMMPfam_MAP7 - no_errors KLHL15 80311 genome.wustl.edu 36 X 23916065 23916065 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 23916065 23916065 C T SNP KLHL15 NM_030624 human genbank 54_36p -1 provisional nonsense c.1709 p.W570* 1 NULL - - no_errors CCNB3 85417 genome.wustl.edu 36 X 50069949 50069949 + Silent SNP T T A novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 50069949 50069949 T A SNP CCNB3 NM_033031 human genbank 54_36p 1 reviewed silent c.2040 p.V680 NULL Cyclin_C;HMMPfam_Cyclin_C;Cyclin_N;HMMPfam_Cyclin_N - no_errors HUWE1 10075 genome.wustl.edu 36 X 53594636 53594636 + Silent SNP C C G novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 53594636 53594636 C G SNP HUWE1 NM_031407 human genbank 54_36p -1 validated silent c.9336 p.L3112 0.91 NULL HMMPfam_WWE;superfamily_UBA-like;HMMPfam_DUF908;HMMPfam_DUF913;superfamily_Hypothetical protein MTH677;superfamily_ARM repeat;superfamily_Hect E3 ligase catalytic domain;HMMPfam_UBA;HMMPfam_HECT - no_errors WNK3 65267 genome.wustl.edu 36 X 54336306 54336306 + Missense_Mutation SNP G G C Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 54336306 54336306 G C SNP WNK3 NM_020922 human genbank 54_36p -1 validated missense c.1873 p.Q625E 1 NULL HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like) - no_errors FGD1 2245 genome.wustl.edu 36 X 54489431 54489431 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0885-01A-02W-0421-09 TCGA-13-0885-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a530d9a9-b21e-47be-b4d8-1707b71f360a 66bc2509-0fe0-4a29-9433-b2cf5b7ea9ad X 54489431 54489431 G C SNP FGD1 NM_004463 human genbank 54_36p -1 reviewed missense c.2722 p.L908V 1 NULL - - no_errors