Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error KCNA10 3744 genome.wustl.edu 36 1 110862267 110862267 + Silent SNP C C G Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 1 110862267 110862267 C G SNP KCNA10 NM_005549 human genbank 54_36p -1 reviewed silent c.666 p.S222 0.16 NULL - - no_errors OVGP1 5016 genome.wustl.edu 36 1 111770772 111770772 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 1 111770772 111770772 G C SNP OVGP1 NM_002557 human genbank 54_36p -1 reviewed missense c.70 p.L24V 1 HMMPfam_Glyco_hydro_18 HMMPfam_Glyco_hydro_18;superfamily_(Trans)glycosidases;superfamily_Chitinase insertion domain - no_errors NUP210L 91181 genome.wustl.edu 36 1 152299686 152299686 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 1 152299686 152299686 T G SNP NUP210L NM_207308 human genbank 54_36p -1 validated missense c.2804 p.Q935P 0.11 NULL - - no_errors NUP210L 91181 genome.wustl.edu 36 1 152365549 152365549 + Silent SNP T T C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 1 152365549 152365549 T C SNP NUP210L NM_207308 human genbank 54_36p -1 validated silent c.1200 p.T400 NULL - - no_errors OBSCN 84033 genome.wustl.edu 36 1 226499829 226499829 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 1 226499829 226499829 C G SNP OBSCN NM_001098623 human genbank 54_36p 1 reviewed missense c.3574 p.Q1192E 1 NULL - - no_errors OR2W5 441932 genome.wustl.edu 36 1 245721382 245721382 + Silent SNP C C A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 1 245721382 245721382 C A SNP OR2W5 NM_001004698 human genbank 54_36p 1 provisional silent c.330 p.T110 NULL - - no_errors INPP5F 22876 genome.wustl.edu 36 10 121577046 121577046 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 10 121577046 121577046 G T SNP INPP5F NM_014937 human genbank 54_36p 1 reviewed missense c.3163 p.V1055L 0.03 NULL HMMPfam_Syja_N - no_errors WAC 51322 genome.wustl.edu 36 10 28940858 28940858 + Splice_Site SNP G G T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 10 28940858 28940858 G T SNP WAC NM_016628 human genbank 54_36p 1 reviewed splice_site c.1437+1 e10+1 1 - - - no_errors GDF2 2658 genome.wustl.edu 36 10 48033912 48033912 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 10 48033912 48033912 G C SNP GDF2 NM_016204 human genbank 54_36p -1 reviewed missense c.962 p.A321G 0.04 NULL - - no_errors FBXO18 84893 genome.wustl.edu 36 10 5998369 5998369 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 10 5998369 5998369 A T SNP FBXO18 NM_032807 human genbank 54_36p 1 reviewed missense c.1885 p.I629F 0.99 NULL - - no_errors ENSG00000214405 0 genome.wustl.edu 36 3 105264954 105264954 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 3 105264954 105264954 C G SNP ENSG00000214405 ENST00000341355 human ensembl 54_36p 1 known missense c.388 p.Q130E 1 NULL - - no_start_codon SIK3 23387 genome.wustl.edu 36 11 116237306 116237306 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 11 116237306 116237306 T G SNP KIAA0999 NM_025164 human genbank 54_36p -1 validated missense c.2001 p.L667F 1 NULL HMMPfam_Pkinase;superfamily_UBA-like;superfamily_Protein kinase-like (PK-like) - no_errors PTH 5741 genome.wustl.edu 36 11 13470546 13470546 + Silent SNP A A G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 11 13470546 13470546 A G SNP PTH NM_000315 human genbank 54_36p -1 reviewed silent c.330 p.T110 0.06 HMMPfam_Parathyroid HMMPfam_Parathyroid - no_errors LOC729960 729960 genome.wustl.edu 36 11 49348473 49348473 + RNA SNP T T A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 11 49348473 49348473 T A SNP LOC729960 XR_016034 human genbank 54_36p 1 model rna NULL NULL 0.998 - - - pseudogene GIF 2694 genome.wustl.edu 36 11 59366546 59366546 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 11 59366546 59366546 T A SNP GIF NM_005142 human genbank 54_36p -1 reviewed missense c.457 p.I153L 0.01 NULL - - no_errors C11orf30 56946 genome.wustl.edu 36 11 75852728 75852728 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 11 75852728 75852728 T C SNP C11orf30 NM_020193 human genbank 54_36p 1 validated missense c.787 p.F263L 1 NULL HMMPfam_ENT - no_errors STAB2 55576 genome.wustl.edu 36 12 102508878 102508878 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 12 102508878 102508878 T A SNP STAB2 NM_017564 human genbank 54_36p 1 reviewed missense c.155 p.V52D 0.02 NULL HMMPfam_Xlink;HMMPfam_Fasciclin;HMMPfam_EGF;HMMPfam_EGF_alliinase;superfamily_Mannose 6-phosphate receptor domain;superfamily_Growth factor receptor domain;HMMPfam_EGF_2;superfamily_C-type lectin-like;superfamily_EGF/Laminin;superfamily_FAS1 domain - no_errors ACACB 32 genome.wustl.edu 36 12 108144727 108144727 + Silent SNP G G A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 12 108144727 108144727 G A SNP ACACB NM_001093 human genbank 54_36p 1 reviewed silent c.3597 p.S1199 0.29 HMMPfam_ACC_central HMMPfam_Carboxyl_trans;HMMPfam_Biotin_lipoyl;HMMPfam_CPSase_L_D2;HMMPfam_CPSase_L_chain;HMMPfam_Biotin_carb_C;superfamily_Single hybrid motif;superfamily_Rudiment single hybrid motif;HMMPfam_ACC_central;superfamily_ClpP/crotonase;superfamily_PreATP-grasp domain;superfamily_Glutathione synthetase ATP-binding domain-like - no_errors LOC643668 643668 genome.wustl.edu 36 12 18737273 18737273 + RNA SNP G G C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 12 18737273 18737273 G C SNP LOC643668 XR_016986 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene ADAMTS20 80070 genome.wustl.edu 36 12 42134112 42134112 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 12 42134112 42134112 T G SNP ADAMTS20 NM_025003 human genbank 54_36p -1 validated missense c.1625 p.H542P 1 NULL "superfamily_Metalloproteases (""zincins"") catalytic domain;superfamily_TSP-1 type 1 repeat;TSP_1;HMMPfam_TSP_1;Reprolysin;HMMPfam_Reprolysin;Pep_M12B_propep;HMMPfam_Pep_M12B_propep;ADAM_spacer1;HMMPfam_ADAM_spacer1;GON;HMMPfam_GON" - no_errors BRCA2 675 genome.wustl.edu 36 13 31810178 31810178 + Frame_Shift_Del DEL T T - novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T - T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 13 31810178 31810178 T - DEL BRCA2 NM_000059 human genbank 54_36p 1 reviewed frame_shift_del c.3686 p.S1230fs 0.94 HMMPfam_BRCA2 superfamily_Nucleic acid-binding proteins;superfamily_BRCA2 helical domain;superfamily_BRCA2 tower domain;BRCA2;HMMPfam_BRCA2;BRCA-2_OB1;HMMPfam_BRCA-2_OB1;BRCA-2_OB3;HMMPfam_BRCA-2_OB3;Tower;HMMPfam_Tower;BRCA-2_helical;HMMPfam_BRCA-2_helical (deletion:cds_exon[31808402;31813333]) no_errors ZBTB1 22890 genome.wustl.edu 36 14 64059932 64059932 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 14 64059932 64059932 A T SNP ZBTB1 ENST00000394712 human ensembl 54_36p 1 known missense c.1957 p.M653L 1 NULL - - no_errors PRC1 9055 genome.wustl.edu 36 15 89318428 89318428 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 15 89318428 89318428 G C SNP PRC1 NM_003981 human genbank 54_36p -1 reviewed missense c.1403 p.P468R 0.15 HMMPfam_MAP65_ASE1 HMMPfam_MAP65_ASE1 - no_errors SYT17 51760 genome.wustl.edu 36 16 19102587 19102587 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 16 19102587 19102587 T G SNP SYT17 NM_016524 human genbank 54_36p 1 validated missense c.568 p.F190V 1 NULL - - no_errors ATP2A1 487 genome.wustl.edu 36 16 28813022 28813022 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 16 28813022 28813022 G A SNP ATP2A1 NM_173201 human genbank 54_36p 1 reviewed missense c.1141 p.E381K 0.98 NULL HMMPfam_Cation_ATPase_N;HMMPfam_Hydrolase;HMMPfam_Cation_ATPase_C;HMMPfam_E1-E2_ATPase;superfamily_HAD-like;superfamily_Calcium ATPase transduction domain A;superfamily_Metal cation-transporting ATPase ATP-binding domain N;superfamily_Calcium ATPase transmembrane domain M - no_errors TSR1 55720 genome.wustl.edu 36 17 2183158 2183158 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 17 2183158 2183158 C G SNP TSR1 NM_018128 human genbank 54_36p -1 validated missense c.1152 p.K384N 0.97 NULL - - no_errors AKAP1 8165 genome.wustl.edu 36 17 52549231 52549231 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 17 52549231 52549231 T A SNP AKAP1 NM_003488 human genbank 54_36p 1 reviewed missense c.2444 p.V815D 1 HMMPfam_TUDOR HMMPfam_KH_1;HMMPfam_TUDOR;superfamily_Eukaryotic type KH-domain (KH-domain type I);superfamily_Tudor/PWWP/MBT - no_errors TP53 7157 genome.wustl.edu 36 17 7519280 7519280 + Splice_Site SNP C C A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 17 7519280 7519280 C A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed splice_site c.376-1 e4-1 1 - - - no_errors ARHGEF15 22899 genome.wustl.edu 36 17 8163429 8163429 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 17 8163429 8163429 A G SNP ARHGEF15 NM_173728 human genbank 54_36p 1 reviewed missense c.2261 p.E754G 1 NULL HMMPfam_RhoGEF;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like - no_errors HRH4 59340 genome.wustl.edu 36 18 20311424 20311424 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 18 20311424 20311424 A T SNP HRH4 NM_021624 human genbank 54_36p 1 reviewed missense c.1073 p.Y358F 1 NULL - - no_errors KIAA1468 57614 genome.wustl.edu 36 18 58045512 58045512 + Nonsense_Mutation SNP T T G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 18 58045512 58045512 T G SNP KIAA1468 NM_020854 human genbank 54_36p 1 validated nonsense c.869 p.L290* 1 NULL - - no_errors ZNF429 353088 genome.wustl.edu 36 19 21505300 21505300 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 19 21505300 21505300 G C SNP ZNF429 NM_001001415 human genbank 54_36p 1 provisional missense c.200 p.R67P NULL - - no_errors ZNF285B 147711 genome.wustl.edu 36 19 49668632 49668632 + RNA SNP A A C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 19 49668632 49668632 A C SNP ZNF285B XR_016906 human genbank 54_36p 1 model rna NULL NULL 0.01 - - - pseudogene SIX5 147912 genome.wustl.edu 36 19 50963225 50963225 + Silent SNP G A A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 19 50963225 50963225 G A SNP SIX5 NM_175875 human genbank 54_36p -1 validated silent c.718 p.L240 1 HMMPfam_Homeobox HMMPfam_Homeobox;superfamily_Homeodomain-like - no_errors BOLL 66037 genome.wustl.edu 36 2 198339554 198339554 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 2 198339554 198339554 A C SNP BOLL NM_197970 human genbank 54_36p -1 validated missense c.535 p.S179A 1 NULL - - no_errors LOC402116 402116 genome.wustl.edu 36 2 209753827 209753827 + RNA SNP A A G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 2 209753827 209753827 A G SNP LOC402116 XR_017081 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene IFT172 26160 genome.wustl.edu 36 2 27561810 27561810 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 2 27561810 27561810 G A SNP IFT172 NM_015662 human genbank 54_36p -1 validated missense c.104 p.T35I 1 NULL - - no_errors MPHOSPH10 10199 genome.wustl.edu 36 2 71230613 71230613 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 2 71230613 71230613 A G SNP MPHOSPH10 NM_005791 human genbank 54_36p 1 reviewed missense c.2006 p.K669R 1 NULL - - no_errors THNSL2 55258 genome.wustl.edu 36 2 88266539 88266539 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 2 88266539 88266539 C A SNP THNSL2 ENST00000377254 human ensembl 54_36p 1 known missense c.1085 p.P362Q 0.976 NULL - - no_errors NCOA3 8202 genome.wustl.edu 36 20 45711202 45711202 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 20 45711202 45711202 C G SNP NCOA3 NM_181659 human genbank 54_36p 1 reviewed missense c.3593 p.P1198R 0.49 NULL HMMPfam_HLH;superfamily_Nuclear receptor coactivator interlocking domain;HMMPfam_DUF1518;superfamily_HLH helix-loop-helix DNA-binding domain;HMMPfam_PAS;HMMPfam_Nuc_rec_co-act;HMMPfam_SRC-1;superfamily_PYP-like sensor domain (PAS domain) - no_errors AURKA 6790 genome.wustl.edu 36 20 54381930 54381930 + Silent SNP T T C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 20 54381930 54381930 T C SNP AURKA NM_003600 human genbank 54_36p -1 reviewed silent c.795 p.G265 0.87 HMMPfam_Pkinase Pkinase;HMMPfam_Pkinase - no_errors MYT1 4661 genome.wustl.edu 36 20 62313927 62313927 + Silent SNP G G A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 20 62313927 62313927 G A SNP MYT1 NM_004535 human genbank 54_36p 1 reviewed silent c.1509 p.T503 0.64 HMMPfam_zf-C2HC HMMPfam_zf-C2HC;HMMPfam_MYT1;superfamily_CCHHC domain - no_errors APOBEC3B 9582 genome.wustl.edu 36 22 37717443 37717443 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 22 37717443 37717443 C T SNP APOBEC3B NM_004900 human genbank 54_36p 1 reviewed missense c.884 p.A295V 0.01 HMMPfam_APOBEC_N HMMPfam_APOBEC_C;HMMPfam_APOBEC_N;superfamily_Cytidine deaminase-like - no_errors PHF21B 112885 genome.wustl.edu 36 22 43691122 43691122 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 22 43691122 43691122 T G SNP PHF21B NM_138415 human genbank 54_36p -1 validated missense c.266 p.D89A 1 NULL HMMPfam_PHD,superfamily_FYVE/PHD zinc finger - no_errors LOC100129306 100129306 genome.wustl.edu 36 13 26489838 26489838 + Silent SNP A A G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 13 26489838 26489838 A G SNP LOC100129306 XM_001719801 human genbank 54_36p -1 model silent c.138 p.C46 1 NULL - - pseudogene GPR149 344758 genome.wustl.edu 36 3 155629297 155629297 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 3 155629297 155629297 A C SNP GPR149 NM_001038705 human genbank 54_36p -1 provisional missense c.802 p.S268A 0.03 NULL - - no_errors TNIK 23043 genome.wustl.edu 36 3 172340001 172340001 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 3 172340001 172340001 C A SNP TNIK NM_015028 human genbank 54_36p -1 provisional missense c.1371 p.Q457H 1 NULL HMMPfam_Pkinase;HMMPfam_CNH;superfamily_Protein kinase-like (PK-like);superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase - no_errors TBC1D5 9779 genome.wustl.edu 36 3 17254817 17254817 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 3 17254817 17254817 C G SNP TBC1D5 NM_014744 human genbank 54_36p -1 validated missense c.1430 p.S477T 0.15 NULL - - no_errors PIK3CA 5290 genome.wustl.edu 36 3 180411038 180411038 + Silent SNP C C T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 3 180411038 180411038 C T SNP PIK3CA NM_006218 human genbank 54_36p 1 reviewed silent c.1530 p.H510 1 NULL PI3K_rbd;HMMPfam_PI3K_rbd;PI3_PI4_kinase;HMMPfam_PI3_PI4_kinase;PI3Ka;HMMPfam_PI3Ka;PI3K_C2;HMMPfam_PI3K_C2;PI3K_p85B;HMMPfam_PI3K_p85B - no_errors LAMP3 27074 genome.wustl.edu 36 3 184352986 184352986 + Splice_Site SNP C C G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 3 184352986 184352986 C G SNP LAMP3 NM_014398 human genbank 54_36p -1 validated splice_site c.760-1 e3-1 0.55 - - - no_errors NEK1 4750 genome.wustl.edu 36 4 170713557 170713557 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 4 170713557 170713557 C T SNP NEK1 NM_012224 human genbank 54_36p -1 validated missense c.1451 p.R484H 1 NULL HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like) - no_errors SORBS2 8470 genome.wustl.edu 36 4 186773046 186773046 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 4 186773046 186773046 T C SNP SORBS2 NM_021069 human genbank 54_36p -1 reviewed missense c.2816 p.E939G 1 NULL - - no_errors EVC2 132884 genome.wustl.edu 36 4 5678506 5678517 + In_Frame_Del DEL TTCCATTTGGTC TTCCATTTGGTC - Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 TTCCATTTGGTC TTCCATTTGGTC TTCCATTTGGTC - TTCCATTTGGTC TTCCATTTGGTC Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 4 5678506 5678517 TTCCATTTGGTC - DEL EVC2 NM_147127 human genbank 54_36p -1 validated in_frame_del c.1917_1906 p.DQME636in_frame_del 0.078:0.452:0.767:0.949:0.957:0.961:0.964:0.977:0.974:0.833:0.867:0.874 NULL - (deletion:cds_exon[5678377,5678536]) no_errors ODZ2 57451 genome.wustl.edu 36 5 167550038 167550038 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 5 167550038 167550038 G T SNP ODZ2 ENST00000388903 human ensembl 54_36p 1 known missense c.2688 p.W896C 1 NULL - - no_errors MTMR12 54545 genome.wustl.edu 36 5 32277959 32277959 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 5 32277959 32277959 C G SNP MTMR12 NM_001040446 human genbank 54_36p -1 reviewed missense c.1132 p.E378Q 0.9 NULL - - no_errors MTHFD1L 25902 genome.wustl.edu 36 6 151372769 151372769 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 6 151372769 151372769 G C SNP MTHFD1L NM_015440 human genbank 54_36p 1 validated missense c.2247 p.M749I 1 HMMPfam_FTHFS HMMPfam_FTHFS;HMMPfam_THF_DHG_CYH;HMMPfam_THF_DHG_CYH_C;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Aminoacid dehydrogenase-like N-terminal domain - no_errors IGF2R 3482 genome.wustl.edu 36 6 160424983 160424983 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 6 160424983 160424983 C G SNP IGF2R NM_000876 human genbank 54_36p 1 reviewed missense c.5845 p.R1949G 0.92 HMMPfam_CIMR HMMPfam_CIMR;HMMPfam_fn2;superfamily_Mannose 6-phosphate receptor domain;superfamily_Kringle-like - no_errors RIMS1 22999 genome.wustl.edu 36 6 73040845 73040845 + Silent SNP G G A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 6 73040845 73040845 G A SNP RIMS1 NM_014989 human genbank 54_36p 1 validated silent c.3471 p.P1157 1 NULL HMMPfam_C2;HMMPfam_PDZ;superfamily_PDZ domain-like;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_FYVE/PHD zinc finger - no_errors SENP6 26054 genome.wustl.edu 36 6 76429850 76429850 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 6 76429850 76429850 C G SNP SENP6 NM_015571 human genbank 54_36p 1 validated missense c.890 p.T297S 0.66 NULL HMMPfam_Peptidase_C48;superfamily_Cysteine proteinases - no_errors MUC3B 57876 genome.wustl.edu 36 7 100390098 100390098 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 7 100390098 100390098 C A SNP MUC3B ENST00000332750 human ensembl 54_36p 1 known missense c.1786 p.L596I NULL - - no_start_codon STAG3 10734 genome.wustl.edu 36 7 99634112 99634112 + Silent SNP C C A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 7 99634112 99634112 C A SNP STAG3 NM_012447 human genbank 54_36p 1 validated silent c.1323 p.A441 0.02 NULL HMMPfam_STAG;superfamily_ARM repeat - no_errors LOC100129960 100129960 genome.wustl.edu 36 8 71017903 71017903 + RNA SNP A A T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 8 71017903 71017903 A T SNP LOC100129960 XR_037318 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene ENSG00000119660 0 genome.wustl.edu 36 14 74828581 74828581 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 14 74828581 74828581 G A SNP ENSG00000119660 ENST00000238638 human ensembl 54_36p -1 known missense c.383 p.T128I 0.01 NULL - - no_errors ARHGEF10 9639 genome.wustl.edu 36 8 1799956 1799956 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 8 1799956 1799956 A C SNP ARHGEF10 NM_014629 human genbank 54_36p 1 reviewed missense c.492 p.E164D NULL HMMPfam_RhoGEF;superfamily_WD40 repeat-like;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like - no_errors LYN 4067 genome.wustl.edu 36 8 57041944 57041944 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f 8 57041944 57041944 G C SNP LYN NM_002350 human genbank 54_36p 1 validated missense c.907 p.V303L 1 HMMPfam_Pkinase_Tyr HMMPfam_SH2;HMMPfam_Pkinase_Tyr;HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_Protein kinase-like (PK-like);superfamily_SH2 domain - no_errors BCORL1 63035 genome.wustl.edu 36 X 128974829 128974829 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f X 128974829 128974829 A T SNP BCORL1 NM_021946 human genbank 54_36p 1 validated missense c.400 p.N134Y NULL HMMPfam_Ank;superfamily_Ankyrin repeat - no_errors TMEM27 57393 genome.wustl.edu 36 X 15556023 15556023 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f X 15556023 15556023 G A SNP TMEM27 NM_020665 human genbank 54_36p -1 provisional missense c.661 p.P221S 1 NULL - - no_errors AWAT1 158833 genome.wustl.edu 36 X 69372713 69372713 + Missense_Mutation SNP C C T Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f X 69372713 69372713 C T SNP AWAT1 NM_001013579 human genbank 54_36p 1 provisional missense c.254 p.T85M 0.985 NULL - - no_errors TAF1 6872 genome.wustl.edu 36 X 70544593 70544593 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f X 70544593 70544593 C G SNP TAF1 NM_004606 human genbank 54_36p 1 reviewed missense c.4311 p.D1437E 1 HMMPfam_Bromodomain Bromodomain;HMMPfam_Bromodomain;TBP-binding;HMMPfam_TBP-binding;TAF(II)230 TBP-binding fragment;superfamily_TAF(II)230 TBP-binding fragment;superfamily_Bromodomain - no_errors LOC727874 727874 genome.wustl.edu 36 X 79703680 79703680 + RNA SNP C C T novel Unknown TCGA-13-0890-01A-01W-0421-09 TCGA-13-0890-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 15b867fb-7a7b-4158-9abd-91870ba77eb7 29711d3a-d06a-45e5-a4a1-98527b64431f X 79703680 79703680 C T SNP LOC727874 XR_042356 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene