Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error DUSP27 92235 genome.wustl.edu 36 1 165362623 165362623 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 1 165362623 165362623 T A SNP DUSP27 NM_001080426 human genbank 54_36p 1 provisional missense c.1631 p.L544Q 1 NULL - - no_errors SLC9A11 284525 genome.wustl.edu 36 1 171812446 171812446 + Silent SNP C C T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 1 171812446 171812446 C T SNP SLC9A11 NM_178527 human genbank 54_36p -1 validated silent c.879 p.P293 0.02 NULL - - no_errors IVNS1ABP 10625 genome.wustl.edu 36 1 183545153 183545153 + Nonsense_Mutation SNP A A T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 1 183545153 183545153 A T SNP IVNS1ABP NM_006469 human genbank 54_36p -1 validated nonsense c.96 p.C32* 1 NULL - - no_errors CRB1 23418 genome.wustl.edu 36 1 195592610 195592610 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 1 195592610 195592610 G A SNP CRB1 NM_201253 human genbank 54_36p 1 reviewed missense c.1015 p.D339N 0.96 NULL HMMPfam_EGF;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_EGF/Laminin - no_errors PLXNA2 5362 genome.wustl.edu 36 1 206457025 206457025 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 1 206457025 206457025 T A SNP PLXNA2 NM_025179 human genbank 54_36p -1 reviewed missense c.866 p.K289M 1 NULL - - no_errors CENPF 1063 genome.wustl.edu 36 1 212887123 212887123 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 1 212887123 212887123 T G SNP CENPF NM_016343 human genbank 54_36p 1 reviewed missense c.7587 p.N2529K NULL Spectrin repeat;superfamily_Spectrin repeat;BAG domain;superfamily_BAG domain - no_errors TRIM67 440730 genome.wustl.edu 36 1 229411375 229411375 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 1 229411375 229411375 A G SNP TRIM67 NM_001004342 human genbank 54_36p 1 validated missense c.1879 p.N627D 1 NULL - - no_errors TFB2M 64216 genome.wustl.edu 36 1 244770987 244770987 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 1 244770987 244770987 C G SNP TFB2M NM_022366 human genbank 54_36p -1 validated missense c.1160 p.W387S 0.31 NULL - - no_errors OR2T33 391195 genome.wustl.edu 36 1 246502789 246502789 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 1 246502789 246502789 G T SNP OR2T33 NM_001004695 human genbank 54_36p -1 provisional missense c.951 p.H317Q NULL - - no_errors PNLIPRP1 5407 genome.wustl.edu 36 10 118345822 118345822 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 10 118345822 118345822 C A SNP PNLIPRP1 NM_006229 human genbank 54_36p 1 provisional missense c.572 p.T191K 1 HMMPfam_Lipase HMMPfam_PLAT;HMMPfam_Lipase;superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain);superfamily_alpha/beta-Hydrolases - no_errors ZNF248 57209 genome.wustl.edu 36 10 38166609 38166609 + Silent SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 10 38166609 38166609 G A SNP ZNF248 NM_021045 human genbank 54_36p -1 provisional silent c.180 p.I60 0.86 NULL HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers - no_errors ADAMTS14 140766 genome.wustl.edu 36 10 72173420 72173420 + Missense_Mutation SNP G G A Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 10 72173420 72173420 G A SNP ADAMTS14 NM_139155 human genbank 54_36p 1 reviewed missense c.2044 p.V682I 0.974 NULL "HMMPfam_TSP_1,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_TSP-1 type 1 repeat" - no_errors ACAT1 38 genome.wustl.edu 36 11 107511134 107511134 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 11 107511134 107511134 G T SNP ACAT1 NM_000019 human genbank 54_36p 1 reviewed missense c.390 p.M130I 1 HMMPfam_Thiolase_N HMMPfam_Thiolase_N;HMMPfam_Thiolase_C;superfamily_Thiolase-like - no_errors ACAT1 38 genome.wustl.edu 36 11 107511160 107511160 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 11 107511160 107511160 G A SNP ACAT1 NM_000019 human genbank 54_36p 1 reviewed missense c.416 p.S139N 1 HMMPfam_Thiolase_N HMMPfam_Thiolase_N;HMMPfam_Thiolase_C;superfamily_Thiolase-like - no_errors SYT10 341359 genome.wustl.edu 36 12 33470699 33470699 + Splice_Site SNP T T C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 12 33470699 33470699 T C SNP SYT10 NM_198992 human genbank 54_36p -1 provisional splice_site c.152-2 e2-2 1 - - - no_errors R3HDM2 22864 genome.wustl.edu 36 12 55938093 55938093 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 12 55938093 55938093 A T SNP R3HDM2 NM_014925 human genbank 54_36p -1 validated missense c.1337 p.L446H 1 NULL - - no_errors OR11H6 122748 genome.wustl.edu 36 14 19761717 19761717 + Missense_Mutation SNP T T G Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 T T T G T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 14 19761717 19761717 T G SNP OR11H6 NM_001004480 human genbank 54_36p 1 provisional missense c.9 p.F3L 0.001 NULL - - no_errors PPP2R3C 55012 genome.wustl.edu 36 14 34634084 34634084 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 14 34634084 34634084 G A SNP PPP2R3C NM_017917 human genbank 54_36p -1 provisional missense c.896 p.S299L 1 NULL superfamily_EF-hand - no_errors C14orf39 317761 genome.wustl.edu 36 14 59973446 59973446 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 14 59973446 59973446 G A SNP C14orf39 NM_174978 human genbank 54_36p -1 validated missense c.1634 p.T545I 1 NULL - - no_errors CGNL1 84952 genome.wustl.edu 36 15 55518952 55518952 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 15 55518952 55518952 G A SNP CGNL1 NM_032866 human genbank 54_36p 1 validated missense c.1463 p.G488D 0.09 NULL HMMPfam_Myosin_tail_1 - no_errors KCNJ12 3768 genome.wustl.edu 36 17 21260314 21260314 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 17 21260314 21260314 G A SNP KCNJ12 NM_021012 human genbank 54_36p 1 validated missense c.1067 p.R356H 1 HMMPfam_IRK HMMPfam_IRK;HMMPfam_IRK_N;superfamily_E set domains;superfamily_Voltage-gated potassium channels - no_errors ATAD5 79915 genome.wustl.edu 36 17 26243895 26243895 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 17 26243895 26243895 T G SNP ATAD5 NM_024857 human genbank 54_36p 1 provisional missense c.4403 p.I1468S 0.99 NULL HMMPfam_AAA;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors WNT9B 7484 genome.wustl.edu 36 17 42307405 42307405 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 17 42307405 42307405 C G SNP WNT9B ENST00000376843 human ensembl 54_36p 1 known missense c.256 p.L86V NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7518997 7518997 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 17 7518997 7518997 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.577 p.H193Y 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors ILVBL 10994 genome.wustl.edu 36 19 15094783 15094783 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 19 15094783 15094783 A T SNP ILVBL NM_006844 human genbank 54_36p -1 reviewed missense c.524 p.F175Y 0.99 HMMPfam_TPP_enzyme_N HMMPfam_TPP_enzyme_C;HMMPfam_TPP_enzyme_M;HMMPfam_TPP_enzyme_N;superfamily_DHS-like NAD/FAD-binding domain;superfamily_Thiamin diphosphate-binding fold (THDP-binding) - no_errors SAFB 6294 genome.wustl.edu 36 19 5592841 5592841 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 19 5592841 5592841 G A SNP SAFB NM_002967 human genbank 54_36p 1 reviewed missense c.430 p.V144I 0.72 NULL HMMPfam_RRM_1;HMMPfam_SAP;superfamily_RNA-binding domain RBD;superfamily_SAP domain - no_errors PEG3 5178 genome.wustl.edu 36 19 62020445 62020445 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 19 62020445 62020445 G A SNP PEG3 NM_006210 human genbank 54_36p -1 provisional missense c.1177 p.R393C 1 NULL HMMPfam_SCAN;HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors ZNF561 93134 genome.wustl.edu 36 19 9582465 9582465 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 19 9582465 9582465 C G SNP ZNF561 NM_152289 human genbank 54_36p -1 validated missense c.665 p.R222T NULL - - no_errors GTDC1 79712 genome.wustl.edu 36 2 144481356 144481356 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 2 144481356 144481356 C G SNP GTDC1 NM_001006636 human genbank 54_36p -1 provisional missense c.738 p.L246F 0.03 NULL - - no_errors DYNC1I2 1781 genome.wustl.edu 36 2 172277531 172277531 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 2 172277531 172277531 A T SNP DYNC1I2 NM_001378 human genbank 54_36p 1 provisional missense c.344 p.H115L 1 NULL - - no_errors TTN 7273 genome.wustl.edu 36 2 179267628 179267628 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 2 179267628 179267628 T C SNP TTN NM_133378 human genbank 54_36p -1 reviewed missense c.27637 p.I9213V 1 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region CCDC108 255101 genome.wustl.edu 36 2 219600667 219600667 + Silent SNP A A C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 2 219600667 219600667 A C SNP CCDC108 NM_194302 human genbank 54_36p -1 provisional silent c.2160 p.P720 NULL - - no_errors PPM1G 5496 genome.wustl.edu 36 2 27458948 27458948 + Silent SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 2 27458948 27458948 G A SNP PPM1G NM_002707 human genbank 54_36p -1 reviewed silent c.1230 p.N410 1 HMMPfam_PP2C HMMPfam_PP2C;superfamily_Protein serine/threonine phosphatase 2C catalytic domain - no_errors MAP4K3 8491 genome.wustl.edu 36 2 39339084 39339084 + Silent SNP A A G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 2 39339084 39339084 A G SNP MAP4K3 NM_003618 human genbank 54_36p -1 reviewed silent c.2379 p.C793 1 HMMPfam_CNH Pkinase;HMMPfam_Pkinase;CNH;HMMPfam_CNH - no_errors RASSF2 9770 genome.wustl.edu 36 20 4724554 4724554 + Missense_Mutation SNP G G T Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 20 4724554 4724554 G T SNP RASSF2 NM_014737 human genbank 54_36p -1 reviewed missense c.194 p.P65H 1 NULL RA,HMMPfam_RA - no_errors uc001wcu.2 0 genome.wustl.edu 36 14 21546075 21546075 + Silent SNP C C T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 14 21546075 21546075 C T SNP uc001wcu.2 ENST00000390447 human ensembl 54_36p 1 known silent c.165 p.F55 0.99 NULL - - no_stop_codon:bad_bp_length_for_coding_region PPARA 5465 genome.wustl.edu 36 22 44973117 44973117 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 22 44973117 44973117 G C SNP PPARA NM_001001928 human genbank 54_36p 1 reviewed missense c.173 p.G58A 0.17 NULL HMMPfam_Hormone_recep;HMMPfam_zf-C4;superfamily_Nuclear receptor ligand-binding domain;superfamily_Glucocorticoid receptor-like (DNA-binding domain) - no_errors POLQ 10721 genome.wustl.edu 36 3 122711226 122711226 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 3 122711226 122711226 G C SNP POLQ NM_199420 human genbank 54_36p -1 validated missense c.1831 p.P611A 1 NULL HMMPfam_DNA_pol_A;HMMPfam_Helicase_C;HMMPfam_DEAD;superfamily_Ribonuclease H-like;superfamily_Immunoglobulin;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_DNA/RNA polymerases - no_errors GSTM5P1 2945 genome.wustl.edu 36 3 12274643 12274643 + RNA SNP G G T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 3 12274643 12274643 G T SNP GSTM1L NR_003112 human genbank 54_36p -1 provisional rna NULL NULL 0.99 - - - pseudogene GFM1 85476 genome.wustl.edu 36 3 159853880 159853880 + Silent SNP T T C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 3 159853880 159853880 T C SNP GFM1 NM_024996 human genbank 54_36p 1 reviewed silent c.928 p.L310 0.01 NULL - - no_errors EHHADH 1962 genome.wustl.edu 36 3 186392720 186392720 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 3 186392720 186392720 G C SNP EHHADH NM_001966 human genbank 54_36p -1 validated missense c.2160 p.S720R 0.94 NULL HMMPfam_ECH;HMMPfam_3HCDH;HMMPfam_3HCDH_N;superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_ClpP/crotonase - no_errors GOLGA4 2803 genome.wustl.edu 36 3 37342022 37342022 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 3 37342022 37342022 C G SNP GOLGA4 NM_002078 human genbank 54_36p 1 reviewed missense c.3641 p.A1214G 0.09 NULL - - no_errors TRPC3 7222 genome.wustl.edu 36 4 123065657 123065657 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 4 123065657 123065657 C G SNP TRPC3 NM_003305 human genbank 54_36p -1 validated missense c.923 p.R308P 1 NULL - - no_errors AASDH 132949 genome.wustl.edu 36 4 56912295 56912295 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 4 56912295 56912295 G T SNP AASDH NM_181806 human genbank 54_36p -1 validated missense c.1662 p.D554E 1 NULL - - no_errors LOC442113 442113 genome.wustl.edu 36 4 83721089 83721089 + RNA SNP A A G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 4 83721089 83721089 A G SNP LOC442113 XR_016390 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene GABRA6 2559 genome.wustl.edu 36 5 161051638 161051638 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 5 161051638 161051638 G A SNP GABRA6 NM_000811 human genbank 54_36p 1 reviewed missense c.940 p.V314I 1 NULL - - no_errors GPR98 84059 genome.wustl.edu 36 5 90085245 90085245 + Silent SNP C C A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 5 90085245 90085245 C A SNP GPR98 NM_032119 human genbank 54_36p 1 reviewed silent c.11220 p.T3740 NULL HMMPfam_GPS;HMMPfam_Calx-beta;HMMPfam_EPTP;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Phosphoglucomutase first 3 domains - no_errors L3MBTL3 84456 genome.wustl.edu 36 6 130429263 130429263 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 6 130429263 130429263 G A SNP L3MBTL3 NM_032438 human genbank 54_36p 1 validated missense c.937 p.A313T 1 NULL - - no_errors GPR126 57211 genome.wustl.edu 36 6 142730653 142730653 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 6 142730653 142730653 T G SNP GPR126 NM_198569 human genbank 54_36p 1 validated missense c.358 p.F120V 1 NULL - - no_errors OPN5 221391 genome.wustl.edu 36 6 47871259 47871259 + Splice_Site SNP G G C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 6 47871259 47871259 G C SNP OPN5 NM_181744 human genbank 54_36p 1 reviewed splice_site c.756+1 e4+1 1 - - - no_errors SPAM1 6677 genome.wustl.edu 36 7 123387190 123387190 + Silent SNP C C T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 7 123387190 123387190 C T SNP SPAM1 NM_003117 human genbank 54_36p 1 reviewed silent c.1461 p.S487 NULL HMMPfam_Glyco_hydro_56;superfamily_(Trans)glycosidases - no_errors OR2A12 346525 genome.wustl.edu 36 7 143423923 143423923 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 7 143423923 143423923 A G SNP OR2A12 NM_001004135 human genbank 54_36p 1 provisional missense c.790 p.S264G NULL - - no_errors IGF2BP3 10643 genome.wustl.edu 36 7 23357590 23357590 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 7 23357590 23357590 C A SNP IGF2BP3 NM_006547 human genbank 54_36p -1 reviewed missense c.542 p.R181M 1 NULL HMMPfam_RRM_1;HMMPfam_KH_1;superfamily_Eukaryotic type KH-domain (KH-domain type I);superfamily_RNA-binding domain RBD - no_errors CD36 948 genome.wustl.edu 36 7 80141354 80141354 + Silent SNP T T C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 7 80141354 80141354 T C SNP CD36 NM_000072 human genbank 54_36p 1 reviewed silent c.1374 p.A458 1 NULL HMMPfam_CD36 - no_errors PTCD1 26024 genome.wustl.edu 36 7 98870415 98870415 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 7 98870415 98870415 C A SNP PTCD1 NM_015545 human genbank 54_36p -1 validated missense c.387 p.W129C 0.84 NULL HMMPfam_PPR;superfamily_TPR-like - no_errors LOC100131044 100131044 genome.wustl.edu 36 10 74348227 74348227 + RNA SNP C C G novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 10 74348227 74348227 C G SNP LOC100131044 XR_038799 human genbank 54_36p -1 model rna NULL NULL 0.51 - - - pseudogene PKHD1L1 93035 genome.wustl.edu 36 8 110522219 110522219 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 8 110522219 110522219 G C SNP PKHD1L1 NM_177531 human genbank 54_36p 1 validated missense c.4061 p.G1354A 1 HMMPfam_TIG HMMPfam_TIG;superfamily_Cupredoxins;superfamily_Pectin lyase-like;superfamily_Composite domain of metallo-dependent hydrolases;superfamily_E set domains;superfamily_Anthrax protective antigen - no_errors EFR3A 23167 genome.wustl.edu 36 8 133028010 133028010 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 8 133028010 133028010 C T SNP EFR3A NM_015137 human genbank 54_36p 1 validated missense c.314 p.A105V 1 NULL - - no_errors CHMP4C 92421 genome.wustl.edu 36 8 82827913 82827913 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 8 82827913 82827913 G T SNP CHMP4C NM_152284 human genbank 54_36p 1 validated missense c.250 p.G84C 1 HMMPfam_Snf7 HMMPfam_Snf7 - no_errors TLR8 51311 genome.wustl.edu 36 X 12848616 12848616 + Silent SNP G G T novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 X 12848616 12848616 G T SNP TLR8 NM_138636 human genbank 54_36p 1 reviewed silent c.1536 p.L512 1 NULL - - no_errors SLC9A7 84679 genome.wustl.edu 36 X 46351437 46351437 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 X 46351437 46351437 G A SNP SLC9A7 NM_032591 human genbank 54_36p -1 reviewed missense c.2072 p.T691M 0.85 NULL HMMPfam_Na_H_Exchanger - no_errors LOC401602 401602 genome.wustl.edu 36 X 92364563 92364563 + RNA SNP G G C novel Unknown TCGA-13-0894-01B-01W-0494-09 TCGA-13-0894-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx eb57990e-702f-4fac-9ef5-7447ecb45cec 5781f8d8-a30f-4eee-acc8-c513e7872d10 X 92364563 92364563 G C SNP LOC401602 XR_016272 human genbank 54_36p -1 model rna NULL NULL 0.57 - - - pseudogene