Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error SLC27A3 11000 genome.wustl.edu 36 1 152017344 152017344 + Silent SNP C C A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 1 152017344 152017344 C A SNP SLC27A3 NM_024330 human genbank 54_36p 1 provisional silent c.1386 p.R462 1 NULL - - no_errors CROCC 9696 genome.wustl.edu 36 1 17168359 17168359 + Silent SNP G G A Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 1 17168359 17168359 G A SNP CROCC NM_014675 human genbank 54_36p 1 validated silent c.5238 p.R1746 0.998 NULL - - no_errors PPP1R15B 84919 genome.wustl.edu 36 1 202646965 202646965 + Silent SNP C C A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 1 202646965 202646965 C A SNP PPP1R15B NM_032833 human genbank 54_36p -1 validated silent c.198 p.L66 0.75 NULL - - no_errors OR2L8 391190 genome.wustl.edu 36 1 246179561 246179561 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 1 246179561 246179561 G C SNP OR2L8 NM_001001963 human genbank 54_36p 1 provisional missense c.779 p.R260P NULL - - no_errors COL16A1 1307 genome.wustl.edu 36 1 31919092 31919092 + Splice_Site SNP C C T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 1 31919092 31919092 C T SNP COL16A1 NM_001856 human genbank 54_36p -1 reviewed splice_site c.2610+1 e38+1 1 - - - no_errors C1orf190 541468 genome.wustl.edu 36 1 46441791 46441791 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 1 46441791 46441791 G C SNP C1orf190 NM_001013615 human genbank 54_36p 1 validated missense c.106 p.E36Q 0.99 NULL - - no_errors FAF1 11124 genome.wustl.edu 36 1 50713925 50713925 + Silent SNP G G C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 1 50713925 50713925 G C SNP FAF1 NM_007051 human genbank 54_36p -1 reviewed silent c.1668 p.S556 1 NULL HMMPfam_UBX;superfamily_UBA-like;superfamily_Ubiquitin-like - no_errors PGM1 5236 genome.wustl.edu 36 1 63874627 63874627 + Silent SNP C C T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 1 63874627 63874627 C T SNP PGM1 NM_002633 human genbank 54_36p 1 provisional silent c.1008 p.P336 1 HMMPfam_PGM_PMM_III superfamily_Phosphoglucomutase first 3 domains;superfamily_Phosphoglucomutase C-terminal domain;HMMPfam_PGM_PMM_IV;HMMPfam_PGM_PMM_I;HMMPfam_PGM_PMM_II;HMMPfam_PGM_PMM_III - no_errors BAG3 9531 genome.wustl.edu 36 10 121426356 121426356 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 10 121426356 121426356 G A SNP BAG3 NM_004281 human genbank 54_36p 1 reviewed missense c.1300 p.G434R 0.31 HMMPfam_BAG HMMPfam_WW;superfamily_WW domain;HMMPfam_BAG;superfamily_BAG domain - no_errors KIAA1274 27143 genome.wustl.edu 36 10 71961158 71961158 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 10 71961158 71961158 T A SNP KIAA1274 NM_014431 human genbank 54_36p 1 validated missense c.575 p.L192H 1 NULL superfamily_(Phosphotyrosine protein) phosphatases II - no_errors SLC17A6 57084 genome.wustl.edu 36 11 22354124 22354124 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 11 22354124 22354124 C A SNP SLC17A6 NM_020346 human genbank 54_36p 1 validated missense c.1195 p.L399M 0.93 HMMPfam_MFS_1 HMMPfam_MFS_1;superfamily_MFS general substrate transporter - no_errors OR5AS1 219447 genome.wustl.edu 36 11 55555264 55555264 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 11 55555264 55555264 G C SNP OR5AS1 NM_001001921 human genbank 54_36p 1 provisional missense c.794 p.S265T 0.01 NULL - - no_errors OR5B2 390190 genome.wustl.edu 36 11 57946621 57946621 + Silent SNP C C T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 11 57946621 57946621 C T SNP OR5B2 NM_001005566 human genbank 54_36p -1 provisional silent c.690 p.K230 0.01 NULL - - no_errors RNF169 254225 genome.wustl.edu 36 11 74224512 74224512 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 11 74224512 74224512 A G SNP RNF169 NM_001098638 human genbank 54_36p 1 validated missense c.1216 p.I406V 1 NULL - - no_errors NOX4 50507 genome.wustl.edu 36 11 88863277 88863277 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 11 88863277 88863277 C A SNP NOX4 NM_016931 human genbank 54_36p -1 reviewed missense c.150 p.L50F 1 NULL HMMPfam_FAD_binding_8;HMMPfam_NAD_binding_6;HMMPfam_Ferric_reduct;superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain;superfamily_Riboflavin synthase domain-like - no_errors NT5DC3 51559 genome.wustl.edu 36 12 102732871 102732871 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 12 102732871 102732871 G A SNP NT5DC3 NM_001031701 human genbank 54_36p -1 validated missense c.367 p.R123W 1 NULL - - no_errors TAS2R43 259289 genome.wustl.edu 36 12 11135240 11135240 + Missense_Mutation SNP G C C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 12 11135240 11135240 G C SNP TAS2R43 NM_176884 human genbank 54_36p -1 provisional missense c.856 p.L286V 0.01 NULL - - no_errors GPR133 283383 genome.wustl.edu 36 12 130054769 130054769 + Silent SNP C A A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 12 130054769 130054769 C A SNP GPR133 NM_198827 human genbank 54_36p 1 validated silent c.1230 p.I410 0.01 NULL HMMPfam_GPS;HMMPfam_7tm_2;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Family A G protein-coupled receptor-like - no_errors ACSM4 341392 genome.wustl.edu 36 12 7354409 7354409 + Silent SNP C C T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 12 7354409 7354409 C T SNP ACSM4 NM_001080454 human genbank 54_36p 1 inferred silent c.420 p.I140 0.86 NULL - - no_errors FGD6 55785 genome.wustl.edu 36 12 94002491 94002491 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 12 94002491 94002491 C G SNP FGD6 NM_018351 human genbank 54_36p -1 validated missense c.4170 p.E1390D 0.99 NULL - - no_errors TUBA3C 7278 genome.wustl.edu 36 13 18649364 18649364 + Silent SNP C T T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 13 18649364 18649364 C T SNP TUBA3C NM_006001 human genbank 54_36p -1 reviewed silent c.759 p.T253 0.96 HMMPfam_Tubulin_C HMMPfam_Tubulin;HMMPfam_Tubulin_C;superfamily_Tubulin nucleotide-binding domain-like;superfamily_Tubulin C-terminal domain-like - no_errors RHPN2P1 646090 genome.wustl.edu 36 15 18693880 18693880 + RNA SNP C C G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 15 18693880 18693880 C G SNP LOC646090 XR_017120 human genbank 54_36p -1 model rna NULL NULL - - - pseudogene ZNF770 54989 genome.wustl.edu 36 15 33061340 33061340 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 15 33061340 33061340 G A SNP ZNF770 NM_014106 human genbank 54_36p -1 validated missense c.1588 p.P530S 1 NULL HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors BRD4 23476 genome.wustl.edu 36 19 15240765 15240765 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 19 15240765 15240765 C T SNP BRD4 NM_058243 human genbank 54_36p -1 reviewed missense c.374 p.C125Y 1 HMMPfam_Bromodomain HMMPfam_Bromodomain;superfamily_Bromodomain - no_errors KIRREL2 84063 genome.wustl.edu 36 19 41043070 41043070 + Silent SNP A A G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 19 41043070 41043070 A G SNP KIRREL2 NM_199180 human genbank 54_36p 1 validated silent c.705 p.P235 1 HMMPfam_I-set HMMPfam_I-set;HMMPfam_V-set;HMMPfam_C2-set_2;superfamily_Immunoglobulin - no_errors CYP2F1 1572 genome.wustl.edu 36 19 46319722 46319722 + Silent SNP C C T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 19 46319722 46319722 C T SNP CYP2F1 NM_000774 human genbank 54_36p 1 reviewed silent c.666 p.S222 0 NULL - - no_errors CIC 23152 genome.wustl.edu 36 19 47488302 47488314 + Frame_Shift_Del DEL GTGCAGTCAGCGG GTGCAGTCAGCGG - novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 GTGCAGTCAGCGG GTGCAGTCAGCGG GTGCAGTCAGCGG - GTGCAGTCAGCGG GTGCAGTCAGCGG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 19 47488302 47488314 GTGCAGTCAGCGG - DEL CIC NM_015125 human genbank 54_36p 1 validated frame_shift_del c.3019_3031 p.V1007fs 1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.998:0.974:0.690:0.757 NULL HMMPfam_HMG_box;superfamily_HMG-box (deletion:cds_exon[47488292;47488458]) no_errors MYH14 79784 genome.wustl.edu 36 19 55496813 55496813 + Missense_Mutation SNP G T T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 19 55496813 55496813 G T SNP MYH14 NM_001077186 human genbank 54_36p 1 reviewed missense c.5454 p.Q1818H 1 NULL - - no_errors NDUFS1 4719 genome.wustl.edu 36 2 206711533 206711533 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 2 206711533 206711533 A C SNP NDUFS1 NM_005006 human genbank 54_36p -1 reviewed missense c.1313 p.L438R 1 HMMPfam_Molybdopterin HMMPfam_Fer2;superfamily_2Fe-2S ferredoxin-like;HMMPfam_Molybdopterin;HMMPfam_DUF1982;superfamily_Formate dehydrogenase/DMSO reductase domains 1-3;superfamily_4Fe-4S ferredoxins - no_errors RNF144A 9781 genome.wustl.edu 36 2 7054521 7054521 + Silent SNP A A C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 2 7054521 7054521 A C SNP RNF144A NM_014746 human genbank 54_36p 1 reviewed silent c.13 p.R5 1 NULL - - no_errors NCOA6 23054 genome.wustl.edu 36 20 32792313 32792313 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 20 32792313 32792313 G T SNP NCOA6 NM_014071 human genbank 54_36p -1 reviewed missense c.5408 p.S1803Y 1 NULL - - no_errors DTX3L 151636 genome.wustl.edu 36 3 123770782 123770782 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 3 123770782 123770782 A C SNP DTX3L NM_138287 human genbank 54_36p 1 validated missense c.1156 p.K386Q 0.3 NULL HMMPfam_zf-C3HC4;superfamily_RING/U-box - no_errors RPL32 6161 genome.wustl.edu 36 3 12855849 12855849 + Nonsense_Mutation SNP T T A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 3 12855849 12855849 T A SNP RPL32 NM_000994 human genbank 54_36p -1 reviewed nonsense c.277 p.K93* 1 NULL - - no_errors MCF2L2 23101 genome.wustl.edu 36 3 184416547 184416556 + Frame_Shift_Del DEL TGCTGAATCT TGCTGAATCT - novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 TGCTGAATCT TGCTGAATCT TGCTGAATCT - TGCTGAATCT TGCTGAATCT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 3 184416547 184416556 TGCTGAATCT - DEL MCF2L2 NM_015078 human genbank 54_36p -1 validated frame_shift_del c.2400_2391 p.K797fs 0.195:0.202:0.201:0.226:0.283:0.282:0.286:0.324:0.404:0.438 NULL - (deletion:cds_exon[184416451;184416576]) no_errors LOC285346 285346 genome.wustl.edu 36 3 44516194 44516194 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 3 44516194 44516194 C T SNP LOC285346 XM_001717544 human genbank 54_36p -1 model missense c.1082 p.C361Y 1 NULL - - no_errors KIF15 56992 genome.wustl.edu 36 3 44842876 44842876 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 3 44842876 44842876 G C SNP KIF15 NM_020242 human genbank 54_36p 1 validated missense c.2706 p.L902F 1 NULL HMMPfam_Kinesin;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_BAG domain - no_errors ATRIP 84126 genome.wustl.edu 36 3 48477017 48477017 + Silent SNP A A G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 3 48477017 48477017 A G SNP ATRIP NM_130384 human genbank 54_36p 1 reviewed silent c.1560 p.G520 NULL - - no_errors NISCH 11188 genome.wustl.edu 36 3 52497361 52497361 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 3 52497361 52497361 G A SNP NISCH NM_007184 human genbank 54_36p 1 validated missense c.2813 p.R938H 1 NULL - - no_errors ABHD6 57406 genome.wustl.edu 36 3 58254519 58254519 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 3 58254519 58254519 A G SNP ABHD6 NM_020676 human genbank 54_36p 1 validated missense c.1001 p.K334R 1 NULL - - no_errors ENSG00000214613 0 genome.wustl.edu 36 16 32928349 32928349 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 16 32928349 32928349 C T SNP ENSG00000214613 ENST00000398668 human ensembl 54_36p 1 known nonsense c.199 p.R67* 0.99 NULL - - no_start_codon:no_stop_codon ODAM 54959 genome.wustl.edu 36 4 71100839 71100839 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 4 71100839 71100839 T G SNP ODAM NM_017855 human genbank 54_36p 1 validated missense c.460 p.W154G 0.99 NULL - - no_errors ITK 3702 genome.wustl.edu 36 5 156570954 156570954 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 5 156570954 156570954 G C SNP ITK NM_005546 human genbank 54_36p 1 reviewed missense c.322 p.E108Q 1 HMMPfam_PH SH2;HMMPfam_SH2;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;SH3_1;HMMPfam_SH3_1;BTK;HMMPfam_BTK;PH;HMMPfam_PH - no_errors GABRA1 2554 genome.wustl.edu 36 5 161250636 161250636 + Splice_Site SNP T T A novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 5 161250636 161250636 T A SNP GABRA1 NM_000806 human genbank 54_36p 1 reviewed splice_site c.856+2 e7+2 1 - - - no_errors SLIT3 6586 genome.wustl.edu 36 5 168145503 168145503 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 5 168145503 168145503 A T SNP SLIT3 NM_003062 human genbank 54_36p -1 validated missense c.1138 p.S380T 1 NULL - - no_errors RNF130 55819 genome.wustl.edu 36 5 179337838 179337838 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 5 179337838 179337838 C G SNP RNF130 NM_018434 human genbank 54_36p -1 reviewed missense c.819 p.Q273H 1 NULL - - no_errors GPR98 84059 genome.wustl.edu 36 5 89960995 89960995 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 5 89960995 89960995 C G SNP GPR98 NM_032119 human genbank 54_36p 1 reviewed missense c.1722 p.I574M 1 NULL HMMPfam_GPS;HMMPfam_Calx-beta;HMMPfam_EPTP;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Phosphoglucomutase first 3 domains - no_errors C6orf192 116843 genome.wustl.edu 36 6 133142141 133142141 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 6 133142141 133142141 C G SNP C6orf192 NM_052831 human genbank 54_36p -1 validated missense c.754 p.G252R 1 NULL - - no_errors JARID2 3720 genome.wustl.edu 36 6 15595579 15595579 + Nonsense_Mutation SNP G G T Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 6 15595579 15595579 G T SNP JARID2 NM_004973 human genbank 54_36p 1 reviewed nonsense c.733 p.E245* 1 NULL HMMPfam_ARID,HMMPfam_JmjN,HMMPfam_zf-C5HC2,HMMPfam_JmjC,superfamily_ARID-like,superfamily_RING/U-box - no_errors RSPO2 340419 genome.wustl.edu 36 8 109039658 109039658 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 8 109039658 109039658 C T SNP RSPO2 NM_178565 human genbank 54_36p -1 validated missense c.442 p.G148S 1 NULL superfamily_Growth factor receptor domain;superfamily_TSP-1 type 1 repeat - no_errors FAM135B 51059 genome.wustl.edu 36 8 139233226 139233226 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 8 139233226 139233226 T C SNP FAM135B NM_015912 human genbank 54_36p -1 validated missense c.2674 p.R892G NULL - - no_errors ASH2L 9070 genome.wustl.edu 36 8 38083730 38083730 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 8 38083730 38083730 C G SNP ASH2L NM_004674 human genbank 54_36p 1 validated missense c.290 p.T97S 0.99 NULL HMMPfam_SPRY - no_errors SLCO5A1 81796 genome.wustl.edu 36 8 70836541 70836541 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 8 70836541 70836541 A G SNP SLCO5A1 NM_030958 human genbank 54_36p -1 reviewed missense c.1031 p.I344T 1 HMMPfam_OATP HMMPfam_OATP;HMMPfam_Kazal_2;superfamily_Kazal-type serine protease inhibitors;superfamily_MFS general substrate transporter - no_errors MAGEH1 28986 genome.wustl.edu 36 X 55496032 55496032 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 X 55496032 55496032 C T SNP MAGEH1 NM_014061 human genbank 54_36p 1 reviewed missense c.500 p.A167V 0.95 HMMPfam_MAGE HMMPfam_MAGE - no_errors NLGN3 54413 genome.wustl.edu 36 X 70304178 70304178 + Nonsense_Mutation SNP C C G novel Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 X 70304178 70304178 C G SNP NLGN3 NM_018977 human genbank 54_36p 1 validated nonsense c.1446 p.Y482* 1 HMMPfam_COesterase HMMPfam_COesterase;superfamily_alpha/beta-Hydrolases - no_errors MFAP3L 9848 genome.wustl.edu 36 4 171163500 171163525 + In_Frame_Del DEL GTGCTGTTAGTCACACTCTTAGCGGT GTGCTGTTAGTCACACTCTTAGCGGT GTTAGTTA Unknown TCGA-13-0897-01A-01W-0421-09 TCGA-13-0897-10A-01W-0421-09 GTGCTGTTAGTCACACTCTTAGCGGT GTGCTGTTAGTCACACTCTTAGCGGT GTGCTGTTAGTCACACTCTTAGCGGT GTTAGTTA GTGCTGTTAGTCACACTCTTAGCGGT GTGCTGTTAGTCACACTCTTAGCGGT Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f48ed68f-a833-4b78-971a-3c746c563d24 79248f7f-c436-4ccd-9859-2f5676e0c942 4 171163500 171163525 GTGCTGTTAGTCACACTCTTAGCGGT GTTAGTTA DEL MFAP3L NM_021647 human genbank 54_36p -1 validated in_frame_del c.104_84 p.KSVTNST29in_frame_del 1.000:1.000:1.000:0.998:0.944:0.668:0.633:0.579:0.285:0.317:0.303:0.216:0.167:0.080:0.025:0.015:0.010:0.004:0.006:0.020:0.160 NULL superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408 (deletion:cds_exon[171163306,171163603]) no_errors