Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
NTNG1	22854	genome.wustl.edu	36	1	107669038	107669038	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	107669038	107669038	C	G	SNP	NTNG1	NM_014917	human	genbank	54_36p	1	provisional	nonsense	c.858	p.Y286*	1	HMMPfam_Laminin_N	HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Galactose-binding domain-like;HMMPfam_EGF_2;superfamily_EGF/Laminin	-	no_errors
RBM15	64783	genome.wustl.edu	36	1	110689748	110689748	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	110689748	110689748	G	A	SNP	RBM15	NM_022768	human	genbank	54_36p	1	validated	silent	c.2928	p.L976		NULL	HMMPfam_RRM_1;HMMPfam_SPOC;superfamily_SPOC domain-like;superfamily_RNA-binding domain RBD	-	no_errors
C1orf183	55924	genome.wustl.edu	36	1	112071729	112071729	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	112071729	112071729	G	C	SNP	C1orf183	NM_019099	human	genbank	54_36p	-1	validated	missense	c.278	p.P93R	0.05	NULL	-	-	no_errors
AP4B1	10717	genome.wustl.edu	36	1	114245902	114245902	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	114245902	114245902	A	C	SNP	AP4B1	NM_006594	human	genbank	54_36p	-1	validated	missense	c.467	p.V156G	1	NULL	-	-	no_errors
HIPK1	204851	genome.wustl.edu	36	1	114284738	114284738	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	114284738	114284738	C	G	SNP	HIPK1	NM_198268	human	genbank	54_36p	1	reviewed	nonsense	c.210	p.Y70*	1	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150592525	150592525	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	150592525	150592525	T	C	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.4361	p.H1454R		NULL	-	-	no_errors
KIAA1026	23254	genome.wustl.edu	36	1	15264712	15264712	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	15264712	15264712	G	T	SNP	KIAA1026	NM_201628	human	genbank	54_36p	1	validated	splice_site	c.1099-1	e8-1	1	-	-	-	no_errors
IGSF9	57549	genome.wustl.edu	36	1	158166686	158166686	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	158166686	158166686	G	A	SNP	IGSF9	NM_020789	human	genbank	54_36p	-1	validated	missense	c.1933	p.R645W	0.8	NULL	-	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19352973	19352973	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	19352973	19352973	T	G	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.6506	p.E2169A	1	NULL	-	-	no_errors
KCNT2	343450	genome.wustl.edu	36	1	194634315	194634315	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	194634315	194634315	C	T	SNP	KCNT2	NM_198503	human	genbank	54_36p	-1	validated	splice_site	c.1294+1	e13+1	1	-	-	-	no_errors
AHCTF1	25909	genome.wustl.edu	36	1	245080990	245080990	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	245080990	245080990	A	T	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.4941	p.S1647R	0.86	NULL	-	-	no_errors
DLGAP3	58512	genome.wustl.edu	36	1	35105308	35105308	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	1	35105308	35105308	G	C	SNP	DLGAP3	NM_001080418	human	genbank	54_36p	-1	provisional	missense	c.2649	p.I883M	0.99	NULL	-	-	no_errors
KIAA1462	57608	genome.wustl.edu	36	10	30357215	30357216	+	Frame_Shift_Del	DEL	CT	CT	-		Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	10	30357215	30357216	CT	-	DEL	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	frame_shift_del	c.1868_1867	p.L624fs	1.000:1.000	NULL	-	(deletion:cds_exon[30355038,30358801])	no_errors
ZNF32	7580	genome.wustl.edu	36	10	43460106	43460106	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	10	43460106	43460106	G	T	SNP	ZNF32	NM_001005368	human	genbank	54_36p	-1	validated	missense	c.220	p.Q74K	1	NULL	-	-	no_errors
ZMIZ1	57178	genome.wustl.edu	36	10	80734929	80734929	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	10	80734929	80734929	C	A	SNP	ZMIZ1	NM_020338	human	genbank	54_36p	1	validated	nonsense	c.2289	p.C763*	1	HMMPfam_zf-MIZ	HMMPfam_zf-MIZ;superfamily_RING/U-box	-	no_errors
TUBB8	347688	genome.wustl.edu	36	10	83295	83295	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	10	83295	83295	G	C	SNP	TUBB8	NM_177987	human	genbank	54_36p	-1	provisional	missense	c.1037	p.P346R	1	NULL	-	-	no_errors
YAP1	10413	genome.wustl.edu	36	11	101605876	101605876	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	11	101605876	101605876	T	A	SNP	YAP1	NM_006106	human	genbank	54_36p	1	reviewed	missense	c.1360	p.L454I	1	NULL	HMMPfam_WW,superfamily_WW domain	-	no_errors
PHLDB1	23187	genome.wustl.edu	36	11	118007142	118007143	+	Missense_Mutation	DNP	GC	GC	CT	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	GC	GC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	11	118007142	118007143	GC	CT	DNP	PHLDB1	NM_015157	human	genbank	54_36p	1	validated	missense	c.1836_1837	p.QR612HC	1.000:1.000	NULL	-	-	no_errors
NUP160	23279	genome.wustl.edu	36	11	47786597	47786597	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	11	47786597	47786597	G	A	SNP	NUP160	NM_015231	human	genbank	54_36p	-1	validated	missense	c.2302	p.P768S	0.98	NULL	superfamily_TPR-like	-	no_errors
CCDC87	55231	genome.wustl.edu	36	11	66116813	66116813	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	11	66116813	66116813	T	A	SNP	CCDC87	NM_018219	human	genbank	54_36p	-1	validated	missense	c.250	p.I84F	0.03	NULL	-	-	no_errors
OAS1	4938	genome.wustl.edu	36	12	111833292	111833292	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	12	111833292	111833292	G	A	SNP	OAS1	NM_001032409	human	genbank	54_36p	1	reviewed	missense	c.523	p.E175K		NULL	superfamily_Nucleotidyltransferase;superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
FBXW8	26259	genome.wustl.edu	36	12	115850266	115850266	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	12	115850266	115850266	T	C	SNP	FBXW8	NM_153348	human	genbank	54_36p	1	reviewed	missense	c.374	p.I125T	1	HMMPfam_F-box	HMMPfam_WD40;HMMPfam_F-box;superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase;superfamily_F-box domain	-	no_errors
ANKRD33	341405	genome.wustl.edu	36	12	50570999	50570999	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	12	50570999	50570999	G	A	SNP	ANKRD33	NM_182608	human	genbank	54_36p	1	validated	silent	c.1002	p.S334	0	NULL	-	-	no_errors
NACA	4666	genome.wustl.edu	36	12	55393239	55393239	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	12	55393239	55393239	G	C	SNP	NACA	NM_005594	human	genbank	54_36p	-1	validated	missense	c.384	p.I128M	0.86	HMMPfam_NAC	HMMPfam_UBA;HMMPfam_NAC	-	no_errors
GLI1	2735	genome.wustl.edu	36	12	56150686	56150686	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	12	56150686	56150686	T	A	SNP	GLI1	NM_005269	human	genbank	54_36p	1	reviewed	missense	c.1896	p.N632K	0.78	NULL	zf-C2H2;HMMPfam_zf-C2H2;C2H2 and C2HC zinc fingers;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MGAT4C	25834	genome.wustl.edu	36	12	84897722	84897722	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	12	84897722	84897722	T	C	SNP	MGAT4C	NM_013244	human	genbank	54_36p	-1	validated	missense	c.913	p.K305E	1	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54;superfamily_Sm-like ribonucleoproteins	-	no_errors
BRCA2	675	genome.wustl.edu	36	13	31835426	31835441	+	Frame_Shift_Del	DEL	TGAGCGCAAATATATC	TGAGCGCAAATATATC	-	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	TGAGCGCAAATATATC	TGAGCGCAAATATATC	TGAGCGCAAATATATC	-	TGAGCGCAAATATATC	TGAGCGCAAATATATC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	13	31835426	31835441	TGAGCGCAAATATATC	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	frame_shift_del	c.8087_8102	p.S2697fs	0.000:0.000:0.002:0.003:0.004:0.003:0.005:0.002:0.001:0.001:0.001:0.001:0.001:0.001:0.000:0.003	HMMPfam_BRCA-2_OB1	superfamily_Nucleic acid-binding proteins;superfamily_BRCA2 helical domain;superfamily_BRCA2 tower domain;BRCA2;HMMPfam_BRCA2;BRCA-2_OB1;HMMPfam_BRCA-2_OB1;BRCA-2_OB3;HMMPfam_BRCA-2_OB3;Tower;HMMPfam_Tower;BRCA-2_helical;HMMPfam_BRCA-2_helical	(deletion:cds_exon[31835316;31835670])	no_errors
MIR504	574507	genome.wustl.edu	36	X	137577620	137577620	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	X	137577620	137577620	C	A	SNP	MIRN504	ENST00000385065	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.86	-	-	-	no_errors
OR4K2	390431	genome.wustl.edu	36	14	19415120	19415120	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	14	19415120	19415120	T	A	SNP	OR4K2	NM_001005501	human	genbank	54_36p	1	provisional	missense	c.854	p.I285K	0.12	NULL	-	-	no_errors
PSME1	5720	genome.wustl.edu	36	14	23677155	23677155	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	14	23677155	23677155	G	T	SNP	PSME1	NM_176783	human	genbank	54_36p	1	reviewed	missense	c.448	p.V150L	1	NULL	-	-	no_errors
ARHGAP5	394	genome.wustl.edu	36	14	31630296	31630296	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	14	31630296	31630296	G	T	SNP	ARHGAP5	NM_001030055	human	genbank	54_36p	1	reviewed	missense	c.670	p.V224L	1	HMMPfam_Ras	HMMPfam_RhoGAP;HMMPfam_FF;superfamily_FF domain;superfamily_GTPase activation domain GAP;HMMPfam_Ras;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
FRMD6	122786	genome.wustl.edu	36	14	51264265	51264265	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	14	51264265	51264265	A	G	SNP	FRMD6	NM_001042481	human	genbank	54_36p	1	validated	missense	c.1613	p.D538G	1	NULL	-	-	no_errors
FBLN5	10516	genome.wustl.edu	36	14	91417405	91417405	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	14	91417405	91417405	G	C	SNP	FBLN5	NM_006329	human	genbank	54_36p	-1	reviewed	missense	c.973	p.L325V	1	HMMPfam_EGF_CA	superfamily_Serine proterase inhibitors,HMMPfam_EGF_CA,superfamily_EGF/Laminin	-	no_errors
BDKRB2	624	genome.wustl.edu	36	14	95777581	95777581	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	14	95777581	95777581	G	A	SNP	BDKRB2	NM_000623	human	genbank	54_36p	1	reviewed	missense	c.1163	p.G388E		NULL	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
CDAN1	146059	genome.wustl.edu	36	15	40804705	40804705	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	15	40804705	40804705	C	G	SNP	CDAN1	NM_138477	human	genbank	54_36p	-1	validated	missense	c.3487	p.E1163Q	0.96	NULL	-	-	no_errors
TUBGCP4	27229	genome.wustl.edu	36	15	41455704	41455704	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	15	41455704	41455704	T	C	SNP	TUBGCP4	NM_014444	human	genbank	54_36p	1	provisional	silent	c.195	p.H65	1	NULL	-	-	no_errors
CSPG4	1464	genome.wustl.edu	36	15	73756197	73756197	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	15	73756197	73756197	G	A	SNP	CSPG4	NM_001897	human	genbank	54_36p	-1	reviewed	silent	c.5718	p.F1906	0.949	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors
ABHD2	11057	genome.wustl.edu	36	15	87520209	87520209	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	15	87520209	87520209	G	C	SNP	ABHD2	NM_007011	human	genbank	54_36p	1	reviewed	missense	c.701	p.C234S	1	NULL	-	-	no_errors
MKL2	57496	genome.wustl.edu	36	16	14142032	14142043	+	In_Frame_Del	DEL	CTCAGAGTGAAG	CTCAGAGTGAAG	-		Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	CTCAGAGTGAAG	CTCAGAGTGAAG	CTCAGAGTGAAG	-	CTCAGAGTGAAG	CTCAGAGTGAAG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	16	14142032	14142043	CTCAGAGTGAAG	-	DEL	MKL2	NM_014048	human	genbank	54_36p	1	validated	in_frame_del	c.68_79	p.QSEA24in_frame_del	1.000:1.000:1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_SAP,superfamily_SAP domain	(deletion:cds_exon[14141965,14142118])	no_errors
NLRC5	84166	genome.wustl.edu	36	16	55656696	55656696	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	16	55656696	55656696	G	T	SNP	NLRC5	NM_032206	human	genbank	54_36p	1	validated	missense	c.4226	p.S1409I	0.42	NULL	HMMPfam_LRR_1;HMMPfam_NACHT;superfamily_RNI-like;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NECAB2	54550	genome.wustl.edu	36	16	82592983	82592983	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	16	82592983	82592983	C	T	SNP	NECAB2	NM_019065	human	genbank	54_36p	1	provisional	silent	c.1093	p.L365	1	NULL	-	-	no_errors
LRRC50	123872	genome.wustl.edu	36	16	82761031	82761031	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	16	82761031	82761031	C	A	SNP	LRRC50	NM_178452	human	genbank	54_36p	1	validated	missense	c.1096	p.P366T		NULL	HMMPfam_LRR_1;superfamily_Outer arm dynein light chain 1	-	no_errors
RARA	5914	genome.wustl.edu	36	17	35765168	35765168	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	17	35765168	35765168	G	C	SNP	RARA	NM_000964	human	genbank	54_36p	1	validated	missense	c.1140	p.K380N	1	HMMPfam_Hormone_recep	HMMPfam_Hormone_recep;HMMPfam_zf-C4;superfamily_Nuclear receptor ligand-binding domain;superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
NKIRAS2	28511	genome.wustl.edu	36	17	37428150	37428150	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	17	37428150	37428150	A	T	SNP	NKIRAS2	NM_001001349	human	genbank	54_36p	1	validated	missense	c.302	p.K101M	1	HMMPfam_Miro	HMMPfam_Miro;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MPO	4353	genome.wustl.edu	36	17	53706008	53706008	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	17	53706008	53706008	G	A	SNP	MPO	NM_000250	human	genbank	54_36p	-1	reviewed	silent	c.1387	p.L463	1	HMMPfam_An_peroxidase	HMMPfam_An_peroxidase;superfamily_Heme-dependent peroxidases	-	no_errors
ERN1	2081	genome.wustl.edu	36	17	59529239	59529239	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	17	59529239	59529239	C	G	SNP	ERN1	NM_001433	human	genbank	54_36p	-1	reviewed	missense	c.149	p.G50A	1	HMMPfam_PQQ	HMMPfam_Pkinase;HMMPfam_PQQ;HMMPfam_Ribonuc_2-5A;superfamily_Protein kinase-like (PK-like);superfamily_Quinoprotein alcohol dehydrogenase-like	-	no_errors
COG1	9382	genome.wustl.edu	36	17	68708381	68708381	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	17	68708381	68708381	C	G	SNP	COG1	NM_018714	human	genbank	54_36p	1	reviewed	missense	c.1152	p.D384E	0.98	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519125	7519125	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	17	7519125	7519125	G	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.530	p.P177R	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
RNF213	57674	genome.wustl.edu	36	17	75934734	75934734	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	17	75934734	75934734	G	T	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.2223	p.K741N	0	NULL	HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Nickel-iron hydrogenase small subunit,superfamily_RING/U-box	-	no_errors
LSMD1	84316	genome.wustl.edu	36	17	7701360	7701360	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	17	7701360	7701360	G	A	SNP	LSMD1	NM_032356	human	genbank	54_36p	-1	provisional	missense	c.107	p.T36I	1	NULL	-	-	no_errors
OSBPL1A	114876	genome.wustl.edu	36	18	20151128	20151128	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	18	20151128	20151128	T	G	SNP	OSBPL1A	NM_080597	human	genbank	54_36p	-1	reviewed	missense	c.853	p.T285P	1	NULL	HMMPfam_Oxysterol_BP;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_PH domain-like	-	no_errors
RIT2	6014	genome.wustl.edu	36	18	38808108	38808108	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	18	38808108	38808108	C	T	SNP	RIT2	NM_002930	human	genbank	54_36p	-1	provisional	missense	c.163	p.D55N	1	HMMPfam_Ras	HMMPfam_Ras;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DPY19L3	147991	genome.wustl.edu	36	19	37664893	37664893	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	19	37664893	37664893	G	A	SNP	DPY19L3	NM_207325	human	genbank	54_36p	1	provisional	silent	c.2058	p.E686	1	NULL	-	-	no_errors
CCDC114	93233	genome.wustl.edu	36	19	53493149	53493149	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	19	53493149	53493149	G	A	SNP	CCDC114	NM_144577	human	genbank	54_36p	-1	validated	silent	c.690	p.A230		NULL	-	-	no_errors
ANGPTL4	51129	genome.wustl.edu	36	19	8337185	8337185	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	19	8337185	8337185	A	C	SNP	ANGPTL4	NM_139314	human	genbank	54_36p	1	reviewed	missense	c.529	p.N177H	0.04	NULL	HMMPfam_Fibrinogen_C;superfamily_Fibrinogen C-terminal domain-like	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8854365	8854371	+	Splice_Site	DEL	CCGCTCA	CCGCTCA	-		Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	CCGCTCA	CCGCTCA	CCGCTCA	-	CCGCTCA	CCGCTCA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	19	8854365	8854371	CCGCTCA	-	DEL	MUC16	NM_024690	human	genbank	54_36p	-1	validated	splice_site_del	c.NULL	e66+2	0.000:0.001:0.004:0.244:0.794:0.911:0.982	-	-	(deletion:intron[8854043,8854372])	no_errors
NCKAP5	344148	genome.wustl.edu	36	2	133258058	133258058	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	133258058	133258058	A	T	SNP	NAP5	NM_207363	human	genbank	54_36p	-1	validated	silent	c.2796	p.P932	1	NULL	-	-	no_errors
MYT1L	23040	genome.wustl.edu	36	2	1905091	1905091	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	1905091	1905091	T	A	SNP	MYT1L	NM_015025	human	genbank	54_36p	-1	validated	missense	c.1457	p.H486L	1	NULL	HMMPfam_zf-C2HC;superfamily_WD40 repeat-like;HMMPfam_MYT1;superfamily_CCHHC domain	-	no_errors
MYT1L	23040	genome.wustl.edu	36	2	1905837	1905837	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	1905837	1905837	A	C	SNP	MYT1L	NM_015025	human	genbank	54_36p	-1	validated	missense	c.711	p.S237R	0.05	NULL	HMMPfam_zf-C2HC;superfamily_WD40 repeat-like;HMMPfam_MYT1;superfamily_CCHHC domain	-	no_errors
NRP2	8828	genome.wustl.edu	36	2	206349354	206349354	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	206349354	206349354	C	T	SNP	NRP2	NM_018534	human	genbank	54_36p	1	reviewed	silent	c.2580	p.H860	1	NULL	-	-	no_errors
SLC11A1	6556	genome.wustl.edu	36	2	218962860	218962860	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	218962860	218962860	C	T	SNP	SLC11A1	NM_000578	human	genbank	54_36p	1	reviewed	silent	c.819	p.R273	0.01	HMMPfam_Nramp	HMMPfam_Nramp	-	no_errors
CAPN10	11132	genome.wustl.edu	36	2	241182798	241182798	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	241182798	241182798	A	G	SNP	CAPN10	NM_023083	human	genbank	54_36p	1	reviewed	silent	c.996	p.T332	1	NULL	-	-	no_errors
ITSN2	50618	genome.wustl.edu	36	2	24287180	24287180	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	24287180	24287180	C	T	SNP	ITSN2	NM_006277	human	genbank	54_36p	-1	reviewed	silent	c.4227	p.A1409	0.52	NULL	-	-	no_errors
CAD	790	genome.wustl.edu	36	2	27294367	27294367	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	27294367	27294367	G	C	SNP	CAD	NM_004341	human	genbank	54_36p	1	reviewed	missense	c.201	p.M67I	0.7	HMMPfam_CPSase_sm_chain	HMMPfam_GATase;HMMPfam_CPSase_sm_chain;superfamily_Carbamoyl phosphate synthetase small subunit N-terminal domain;HMMPfam_CPSase_L_D2;HMMPfam_CPSase_L_D3;HMMPfam_CPSase_L_chain;superfamily_Aspartate/ornithine carbamoyltransferase;HMMPfam_OTCace;HMMPfam_OTCace_N;HMMPfam_Amidohydro_1;superfamily_Composite domain of metallo-dependent hydrolases;HMMPfam_MGS;superfamily_Carbamoyl phosphate synthetase large subunit connection domain;superfamily_Metallo-dependent hydrolases;superfamily_Class I glutamine amidotransferase-like;superfamily_Methylglyoxal synthase-like;superfamily_PreATP-grasp domain;superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
GTF2A1L	11036	genome.wustl.edu	36	2	48727208	48727208	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	48727208	48727208	A	G	SNP	GTF2A1L	NM_172311	human	genbank	54_36p	1	reviewed	silent	c.2613	p.V871	0.02	NULL	-	-	no_errors
CCDC88A	55704	genome.wustl.edu	36	2	55443009	55443009	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	55443009	55443009	A	G	SNP	CCDC88A	NM_018084	human	genbank	54_36p	-1	validated	missense	c.566	p.L189P	1	NULL	-	-	no_errors
MRPS5	64969	genome.wustl.edu	36	2	95116901	95116901	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	2	95116901	95116901	G	A	SNP	MRPS5	NM_031902	human	genbank	54_36p	-1	reviewed	silent	c.1221	p.D407	1	NULL	-	-	no_errors
C20orf46	55321	genome.wustl.edu	36	20	1110098	1110098	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	20	1110098	1110098	G	T	SNP	C20orf46	NM_018354	human	genbank	54_36p	-1	predicted	silent	c.165	p.T55	0.29	NULL	-	-	no_errors
SLC13A3	64849	genome.wustl.edu	36	20	44672535	44672535	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	20	44672535	44672535	C	A	SNP	SLC13A3	NM_022829	human	genbank	54_36p	-1	reviewed	missense	c.498	p.K166N	0.88	HMMPfam_Na_sulph_symp	HMMPfam_Na_sulph_symp	-	no_errors
RASSF2	9770	genome.wustl.edu	36	20	4718300	4718300	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	20	4718300	4718300	C	T	SNP	RASSF2	NM_014737	human	genbank	54_36p	-1	reviewed	missense	c.581	p.R194H	1	HMMPfam_RA	RA;HMMPfam_RA	-	no_errors
SAMSN1	64092	genome.wustl.edu	36	21	14794923	14794923	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	21	14794923	14794923	C	T	SNP	SAMSN1	NM_022136	human	genbank	54_36p	-1	validated	missense	c.566	p.G189E	1	HMMPfam_SH3_2	superfamily_SH3-domain;superfamily_SAM/Pointed domain;HMMPfam_SAM_2;HMMPfam_SH3_2	-	no_errors
IGLV3-22	28795	genome.wustl.edu	36	22	21377142	21377142	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	22	21377142	21377142	G	C	SNP	IGLV3-22	ENST00000390307	human	ensembl	54_36p	1	known	missense	c.180	p.Q60H	0.88	NULL	-	-	no_stop_codon
PKDREJ	10343	genome.wustl.edu	36	22	45033730	45033730	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	22	45033730	45033730	T	C	SNP	PKDREJ	NM_006071	human	genbank	54_36p	-1	reviewed	missense	c.4154	p.N1385S		NULL	superfamily_MFS general substrate transporter;superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain);superfamily_Voltage-gated potassium channels;HMMPfam_PLAT;HMMPfam_REJ;HMMPfam_PKD_channel	-	no_errors
NKTR	4820	genome.wustl.edu	36	3	42653489	42653489	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	3	42653489	42653489	G	A	SNP	NKTR	NM_005385	human	genbank	54_36p	1	reviewed	missense	c.1289	p.R430H	1	NULL	-	-	no_errors
ALPK1	80216	genome.wustl.edu	36	4	113572696	113572696	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	4	113572696	113572696	C	T	SNP	ALPK1	NM_001102406	human	genbank	54_36p	1	validated	silent	c.2544	p.A848	0.02	NULL	-	-	no_errors
LOC729497	729497	genome.wustl.edu	36	4	146765721	146765721	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	4	146765721	146765721	G	A	SNP	LOC729497	XR_015940	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.92	-	-	-	pseudogene
WDR1	9948	genome.wustl.edu	36	4	9688109	9688109	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	4	9688109	9688109	T	C	SNP	WDR1	NM_017491	human	genbank	54_36p	-1	reviewed	missense	c.1631	p.N544S	1	HMMPfam_WD40	HMMPfam_WD40;superfamily_WD40 repeat-like	-	no_errors
PCDHGA5	56110	genome.wustl.edu	36	5	140726341	140726341	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	5	140726341	140726341	T	G	SNP	PCDHGA5	NM_018918	human	genbank	54_36p	1	reviewed	missense	c.2260	p.S754A	1	NULL	-	-	no_errors
PCDH12	51294	genome.wustl.edu	36	5	141311244	141311244	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	5	141311244	141311244	G	A	SNP	PCDH12	NM_016580	human	genbank	54_36p	-1	reviewed	silent	c.2976	p.S992	1	NULL	-	-	no_errors
PAPD4	167153	genome.wustl.edu	36	5	79013584	79013584	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	5	79013584	79013584	G	T	SNP	PAPD4	NM_173797	human	genbank	54_36p	1	validated	missense	c.1324	p.A442S	1	NULL	-	-	no_errors
LOC645181	645181	genome.wustl.edu	36	5	84881560	84881560	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	5	84881560	84881560	C	T	SNP	LOC645181	XR_017382	human	genbank	54_36p	1	model	rna	NULL	NULL	0.98	-	-	-	pseudogene
ENSG00000213731	0	genome.wustl.edu	36	5	90808219	90808220	+	Splice_Site	INS	-	-	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	5	90808219	90808220	-	G	INS	ENSG00000213731	ENST00000395972	human	ensembl	54_36p	1	novel	splice_site_ins	c.NULL	NULL	0.983:0.990	-	-	-	no_coding_region:pseudogene
GCNT2	2651	genome.wustl.edu	36	6	10637524	10637532	+	In_Frame_Del	DEL	GCGACGGAT	GCGACGGAT	-		Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	GCGACGGAT	GCGACGGAT	GCGACGGAT	-	GCGACGGAT	GCGACGGAT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	6	10637524	10637532	GCGACGGAT	-	DEL	GCNT2	NM_145649	human	genbank	54_36p	1	reviewed	in_frame_del	c.394_402	p.TDA133in_frame_del	0.997:0.983:0.000:0.000:0.001:0.000:0.000:0.000:0.000	HMMPfam_Branch	HMMPfam_Branch	(deletion:cds_exon[10637131,10638055])	no_errors
ZDHHC14	79683	genome.wustl.edu	36	6	157994585	157994585	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	6	157994585	157994585	C	G	SNP	ZDHHC14	NM_024630	human	genbank	54_36p	1	provisional	missense	c.1006	p.Q336E	1	NULL	-	-	no_errors
LPA	4018	genome.wustl.edu	36	6	160930625	160930625	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	6	160930625	160930625	G	T	SNP	LPA	NM_005577	human	genbank	54_36p	-1	validated	silent	c.3897	p.S1299	0.64	NULL	-	-	no_errors
HIST1H3H	8357	genome.wustl.edu	36	6	27885855	27885855	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	6	27885855	27885855	C	G	SNP	HIST1H3H	NM_003536	human	genbank	54_36p	1	reviewed	missense	c.25	p.R9G	1	NULL	-	-	no_errors
HIST1H4J	8363	genome.wustl.edu	36	6	27900168	27900168	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	6	27900168	27900168	G	T	SNP	HIST1H4J	NM_021968	human	genbank	54_36p	1	reviewed	missense	c.287	p.R96L	1	NULL	-	-	no_errors
HLA-G	3135	genome.wustl.edu	36	6	29905688	29905688	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	6	29905688	29905688	G	T	SNP	HLA-G	NM_002127	human	genbank	54_36p	1	reviewed	missense	c.1012	p.D338Y	1	NULL	-	-	no_errors
BAT2	7916	genome.wustl.edu	36	6	31702885	31702885	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	6	31702885	31702885	C	G	SNP	BAT2	NM_080686	human	genbank	54_36p	1	reviewed	silent	c.1221	p.A407	1	NULL	HMMPfam_BAT2_N	-	no_errors
TAPBP	6892	genome.wustl.edu	36	6	33380202	33380202	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	6	33380202	33380202	G	A	SNP	TAPBP	NM_003190	human	genbank	54_36p	-1	reviewed	missense	c.1060	p.H354Y	0.29	NULL	-	-	no_errors
C6orf222	389384	genome.wustl.edu	36	6	36405842	36405842	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	6	36405842	36405842	G	C	SNP	C6orf222	NM_001010903	human	genbank	54_36p	-1	predicted	missense	c.604	p.R202G		NULL	-	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100450151	100450151	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	7	100450151	100450151	G	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	silent	c.15	p.G5	0.01	NULL	HMMPfam_SEA;superfamily_EGF/Laminin;superfamily_SEA domain	-	no_errors
C7orf58	79974	genome.wustl.edu	36	7	120474195	120474195	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	7	120474195	120474195	A	G	SNP	C7orf58	NM_024913	human	genbank	54_36p	1	validated	missense	c.452	p.D151G	1	NULL	-	-	no_errors
TBXAS1	6916	genome.wustl.edu	36	7	139299719	139299719	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	7	139299719	139299719	C	G	SNP	TBXAS1	NM_001061	human	genbank	54_36p	1	reviewed	missense	c.537	p.I179M	1	NULL	-	-	no_errors
KEL	3792	genome.wustl.edu	36	7	142351606	142351606	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	7	142351606	142351606	C	A	SNP	KEL	NM_000420	human	genbank	54_36p	-1	reviewed	missense	c.1417	p.A473S	0.11	NULL	-	-	no_errors
STEAP2	261729	genome.wustl.edu	36	7	89697188	89697188	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	7	89697188	89697188	T	A	SNP	STEAP2	NM_001040665	human	genbank	54_36p	1	reviewed	missense	c.1087	p.F363I	1	NULL	-	-	no_errors
SAMD9	54809	genome.wustl.edu	36	7	92571396	92571396	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	7	92571396	92571396	C	A	SNP	SAMD9	NM_017654	human	genbank	54_36p	-1	validated	missense	c.1951	p.A651S	0.14	NULL	-	-	no_errors
ZNF498	221785	genome.wustl.edu	36	7	99065292	99065292	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	7	99065292	99065292	C	G	SNP	ZNF498	NM_145115	human	genbank	54_36p	1	validated	missense	c.1348	p.R450G	0.22	NULL	-	-	no_errors
ENSG00000188463	0	genome.wustl.edu	36	7	71923895	71923895	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	7	71923895	71923895	C	A	SNP	ENSG00000188463	ENST00000389196	human	ensembl	54_36p	-1	known	missense	c.237	p.E79D	1	NULL	-	-	no_errors
SPAG1	6674	genome.wustl.edu	36	8	101306630	101306630	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	8	101306630	101306630	C	A	SNP	SPAG1	NM_003114	human	genbank	54_36p	1	reviewed	nonsense	c.1742	p.S581*	0.9	NULL	HMMPfam_TPR_1;superfamily_Protein prenylyltransferase;superfamily_TPR-like	-	no_errors
KHDRBS3	10656	genome.wustl.edu	36	8	136726510	136726510	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	8	136726510	136726510	A	G	SNP	KHDRBS3	NM_006558	human	genbank	54_36p	1	provisional	missense	c.917	p.H306R	1	NULL	-	-	no_errors
HR	55806	genome.wustl.edu	36	8	22037258	22037258	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	8	22037258	22037258	G	A	SNP	HR	NM_005144	human	genbank	54_36p	-1	reviewed	silent	c.1764	p.A588	0.001	NULL	HMMPfam_JmjC,superfamily_Clavaminate synthase-like,superfamily_Zinc beta-ribbon	-	no_errors
EBF2	64641	genome.wustl.edu	36	8	25800201	25800201	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	8	25800201	25800201	C	A	SNP	EBF2	NM_022659	human	genbank	54_36p	-1	validated	missense	c.996	p.R332S	1	NULL	-	-	no_errors
POTEA	340441	genome.wustl.edu	36	8	43271424	43271424	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	8	43271424	43271424	C	A	SNP	POTEA	NM_001005365	human	genbank	54_36p	1	provisional	missense	c.404	p.A135D	0.99	NULL	-	-	no_errors
OR13C5	138799	genome.wustl.edu	36	9	106401084	106401084	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	9	106401084	106401084	C	A	SNP	OR13C5	NM_001004482	human	genbank	54_36p	-1	provisional	missense	c.432	p.M144I		NULL	-	-	no_errors
ZNF462	58499	genome.wustl.edu	36	9	108729525	108729525	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	9	108729525	108729525	G	A	SNP	ZNF462	NM_021224	human	genbank	54_36p	1	validated	missense	c.3511	p.A1171T	0.91	NULL	-	-	no_errors
PALM2-AKAP2	445815	genome.wustl.edu	36	9	111939521	111939521	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	9	111939521	111939521	G	C	SNP	PALM2-AKAP2	NM_007203	human	genbank	54_36p	1	validated	missense	c.1876	p.G626R	0.01	NULL	-	-	no_errors
NR6A1	2649	genome.wustl.edu	36	9	126338213	126338213	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	9	126338213	126338213	C	A	SNP	NR6A1	NM_033334	human	genbank	54_36p	-1	reviewed	nonsense	c.844	p.E282*	1	NULL	HMMPfam_Hormone_recep,HMMPfam_zf-C4,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
QSOX2	169714	genome.wustl.edu	36	9	138243061	138243061	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	9	138243061	138243061	G	T	SNP	QSOX2	NM_181701	human	genbank	54_36p	-1	validated	missense	c.1419	p.F473L	1	HMMPfam_Evr1_Alr	HMMPfam_Evr1_Alr;superfamily_Thioredoxin-like;HMMPfam_Thioredoxin;superfamily_FAD-dependent thiol oxidase	-	no_errors
TEK	7010	genome.wustl.edu	36	9	27207734	27207734	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	9	27207734	27207734	G	T	SNP	TEK	NM_000459	human	genbank	54_36p	1	reviewed	missense	c.3040	p.V1014L	1	HMMPfam_Pkinase_Tyr	superfamily_Fibronectin type III;superfamily_Protein kinase-like (PK-like);superfamily_Immunoglobulin;superfamily_EGF/Laminin;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;fn3;HMMPfam_fn3;EGF_2;HMMPfam_EGF_2	-	no_errors
NPR2	4882	genome.wustl.edu	36	9	35798671	35798671	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	9	35798671	35798671	G	T	SNP	NPR2	NM_003995	human	genbank	54_36p	1	reviewed	missense	c.2878	p.V960F	0.99	HMMPfam_Guanylate_cyc	HMMPfam_Pkinase;HMMPfam_Guanylate_cyc;HMMPfam_ANF_receptor;superfamily_Protein kinase-like (PK-like);superfamily_Periplasmic binding protein-like I;superfamily_Adenylyl and guanylyl cyclase catalytic domain	-	no_errors
RPS10P3	158104	genome.wustl.edu	36	9	89821169	89821169	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	9	89821169	89821169	C	A	SNP	RPS10P3	XR_016556	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ZNF169	169841	genome.wustl.edu	36	9	96102338	96102338	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	9	96102338	96102338	G	C	SNP	ZNF169	NM_194320	human	genbank	54_36p	1	validated	missense	c.677	p.S226T		NULL	-	-	no_errors
GABRE	2564	genome.wustl.edu	36	X	150888815	150888815	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	X	150888815	150888815	A	T	SNP	GABRE	NM_004961	human	genbank	54_36p	-1	reviewed	silent	c.324	p.P108	0.63	NULL	-	-	no_errors
PHKA1	5255	genome.wustl.edu	36	X	71747725	71747725	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	X	71747725	71747725	G	A	SNP	PHKA1	NM_002637	human	genbank	54_36p	-1	validated	missense	c.2404	p.R802W	0.07	HMMPfam_PHK_AB	HMMPfam_PHK_AB;superfamily_Six-hairpin glycosidases	-	no_errors
DIAPH2	1730	genome.wustl.edu	36	X	96283423	96283423	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f9eab025-5518-4240-b1a8-19f8ff8354f0	01361f79-f17b-431a-a658-e8f4d1df7636	X	96283423	96283423	T	C	SNP	DIAPH2	NM_006729	human	genbank	54_36p	1	reviewed	missense	c.2693	p.L898P	1	HMMPfam_FH2	HMMPfam_Drf_DAD;HMMPfam_Drf_FH3;HMMPfam_Drf_GBD;HMMPfam_FH2;superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors