Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error NUF2 83540 genome.wustl.edu 36 1 161564699 161564699 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 161564699 161564699 A C SNP NUF2 NM_031423 human genbank 54_36p 1 reviewed missense c.256 p.S86R 1 HMMPfam_Nuf2 HMMPfam_Nuf2 - no_errors LOC284685 284685 genome.wustl.edu 36 1 164512962 164512962 + RNA SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 164512962 164512962 C T SNP LOC284685 XR_017685 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene KLHDC7A 127707 genome.wustl.edu 36 1 18680136 18680136 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 18680136 18680136 C G SNP KLHDC7A NM_152375 human genbank 54_36p 1 validated missense c.74 p.A25G 0.816 NULL - - no_errors SNAP47 116841 genome.wustl.edu 36 1 226013795 226013795 + Nonsense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 226013795 226013795 C G SNP SNAP47 NM_053052 human genbank 54_36p 1 validated nonsense c.1109 p.S370* 0.01 NULL - - no_errors KDM1A 23028 genome.wustl.edu 36 1 23229651 23229651 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 23229651 23229651 C A SNP AOF2 NM_015013 human genbank 54_36p 1 reviewed missense c.454 p.P152T 1 NULL HMMPfam_Amino_oxidase;HMMPfam_SWIRM;superfamily_FAD/NAD(P)-binding domain;superfamily_FAD-linked reductases C-terminal domain - no_errors SLC35F3 148641 genome.wustl.edu 36 1 232433917 232433917 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 232433917 232433917 G A SNP SLC35F3 NM_173508 human genbank 54_36p 1 provisional missense c.415 p.V139M 0.96 NULL HMMPfam_DUF6;superfamily_Multidrug resistance efflux transporter EmrE - no_errors KIF26B 55083 genome.wustl.edu 36 1 243770770 243770770 + Silent SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 243770770 243770770 C T SNP KIF26B NM_018012 human genbank 54_36p 1 provisional silent c.1245 p.L415 1 NULL - - no_errors PIGV 55650 genome.wustl.edu 36 1 26993844 26993844 + Silent SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 26993844 26993844 G T SNP PIGV NM_017837 human genbank 54_36p 1 validated silent c.732 p.S244 0 HMMPfam_Mannosyl_trans2 HMMPfam_Mannosyl_trans2 - no_errors OSCP1 127700 genome.wustl.edu 36 1 36656411 36656411 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 36656411 36656411 G C SNP C1orf102 NM_145047 human genbank 54_36p -1 validated missense c.1086 p.I362M 1 NULL - - no_errors DMBX1 127343 genome.wustl.edu 36 1 46750477 46750477 + Silent SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 46750477 46750477 G A SNP DMBX1 NM_147192 human genbank 54_36p 1 reviewed silent c.873 p.P291 0.842 NULL - - no_errors CACHD1 57685 genome.wustl.edu 36 1 64902807 64902807 + Silent SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 64902807 64902807 C G SNP CACHD1 NM_020925 human genbank 54_36p 1 validated silent c.1980 p.V660 1 NULL - - no_errors ZZZ3 26009 genome.wustl.edu 36 1 77817877 77817877 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 77817877 77817877 T C SNP ZZZ3 NM_015534 human genbank 54_36p -1 provisional missense c.2005 p.K669E 1 NULL - - no_errors MCOLN2 255231 genome.wustl.edu 36 1 85194704 85194704 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 85194704 85194704 A G SNP MCOLN2 NM_153259 human genbank 54_36p -1 reviewed missense c.563 p.L188P 0.87 NULL - - no_errors LRRC8D 55144 genome.wustl.edu 36 1 90172643 90172643 + Silent SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 1 90172643 90172643 G C SNP LRRC8D NM_018103 human genbank 54_36p 1 validated silent c.1428 p.L476 0.86 NULL - - no_errors ADD3 120 genome.wustl.edu 36 10 111882060 111882060 + Missense_Mutation SNP G G C Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 10 111882060 111882060 G C SNP ADD3 NM_016824 human genbank 54_36p 1 reviewed missense c.1740 p.E580D 1 NULL HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase - no_errors C10orf84 63877 genome.wustl.edu 36 10 120075697 120075697 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 10 120075697 120075697 C A SNP C10orf84 NM_022063 human genbank 54_36p -1 validated nonsense c.502 p.E168* 1 NULL - - no_errors KIAA1217 56243 genome.wustl.edu 36 10 24802221 24802221 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 10 24802221 24802221 C T SNP KIAA1217 NM_019590 human genbank 54_36p 1 validated missense c.905 p.S302F 0.89 NULL - - no_errors KIAA1279 26128 genome.wustl.edu 36 10 70446172 70446172 + Silent SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 10 70446172 70446172 G A SNP KIAA1279 NM_015634 human genbank 54_36p 1 validated silent c.1860 p.L620 0.97 NULL superfamily_TPR-like - no_errors LIPJ 142910 genome.wustl.edu 36 10 90356418 90356418 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 10 90356418 90356418 C A SNP LIPJ NM_001010939 human genbank 54_36p 1 provisional missense c.875 p.S292Y 0.33 NULL - - no_errors SRP9L1 653226 genome.wustl.edu 36 10 93556982 93556982 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 10 93556982 93556982 G T SNP LOC653226 XM_927451 human genbank 54_36p -1 model missense c.195 p.F65L 1 NULL - - no_errors ENSG00000180574 0 genome.wustl.edu 36 12 10550232 10550232 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 12 10550232 10550232 C G SNP ENSG00000180574 ENST00000322446 human ensembl 54_36p 1 known missense c.464 p.A155G 1 NULL HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,HMMPfam_eIF2_C,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors CD3D 915 genome.wustl.edu 36 11 117716412 117716412 + Silent SNP G G A Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 117716412 117716412 G A SNP CD3D NM_000732 human genbank 54_36p -1 reviewed silent c.162 p.D54 0 NULL - - no_errors NFRKB 4798 genome.wustl.edu 36 11 129244766 129244766 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 129244766 129244766 C G SNP NFRKB NM_006165 human genbank 54_36p -1 validated missense c.3439 p.G1147R 0.79 NULL - - no_errors NAV2 89797 genome.wustl.edu 36 11 20075774 20075774 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 20075774 20075774 G C SNP NAV2 NM_182964 human genbank 54_36p 1 validated missense c.6265 p.E2089Q 1 NULL - - no_errors KBTBD4 55709 genome.wustl.edu 36 11 47553810 47553810 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 47553810 47553810 G T SNP KBTBD4 NM_016506 human genbank 54_36p -1 validated missense c.607 p.Q203K 1 NULL - - no_errors LOC283116 283116 genome.wustl.edu 36 11 49016060 49016060 + Silent SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 49016060 49016060 T C SNP LOC283116 XM_208043 human genbank 54_36p 1 model silent c.1314 p.S438 0.09 NULL - - no_errors GLYATL1 92292 genome.wustl.edu 36 11 58467706 58467706 + Silent SNP A A C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 58467706 58467706 A C SNP GLYATL1 NM_080661 human genbank 54_36p 1 provisional silent c.139 p.R47 0 NULL - - no_errors DLG2 1740 genome.wustl.edu 36 11 83175364 83175364 + Silent SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 83175364 83175364 T C SNP DLG2 ENST00000398301 human ensembl 54_36p -1 known silent c.1644 p.K548 NULL - - no_errors FAT3 120114 genome.wustl.edu 36 11 91725225 91725225 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 91725225 91725225 C T SNP FAT3 NM_001008781 human genbank 54_36p 1 validated missense c.299 p.A100V 1 NULL - - no_errors KLRC3 3823 genome.wustl.edu 36 12 10462249 10462249 + Silent SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 12 10462249 10462249 G A SNP KLRC3 NM_007333 human genbank 54_36p -1 reviewed silent c.447 p.N149 0.01 HMMPfam_Lectin_C HMMPfam_Lectin_C;superfamily_C-type lectin-like - no_errors SSH1 54434 genome.wustl.edu 36 12 107770579 107770579 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 12 107770579 107770579 T C SNP SSH1 NM_018984 human genbank 54_36p -1 provisional missense c.74 p.E25G 1 NULL - - no_errors TMEM116 89894 genome.wustl.edu 36 12 110856111 110856111 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 12 110856111 110856111 C G SNP TMEM116 NM_138341 human genbank 54_36p -1 provisional missense c.419 p.R140P 0.06 NULL - - no_errors HIST4H4 121504 genome.wustl.edu 36 12 14815167 14815167 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 12 14815167 14815167 C T SNP HIST4H4 NM_175054 human genbank 54_36p -1 reviewed missense c.119 p.R40Q 1 NULL - - no_errors SLC6A12 6539 genome.wustl.edu 36 12 184122 184122 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 12 184122 184122 G T SNP SLC6A12 NM_003044 human genbank 54_36p -1 validated missense c.218 p.A73D 1 HMMPfam_SNF HMMPfam_SNF - no_errors PDZRN4 29951 genome.wustl.edu 36 12 40252756 40252756 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 12 40252756 40252756 G T SNP PDZRN4 NM_013377 human genbank 54_36p 1 validated missense c.1134 p.K378N 1 NULL HMMPfam_PDZ;superfamily_PDZ domain-like - no_errors MRPL42 28977 genome.wustl.edu 36 12 92405446 92405446 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 12 92405446 92405446 C G SNP MRPL42 NM_014050 human genbank 54_36p 1 reviewed missense c.262 p.H88D 1 NULL - - no_errors PARP4 143 genome.wustl.edu 36 13 23949839 23949839 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 13 23949839 23949839 C G SNP PARP4 NM_006437 human genbank 54_36p -1 reviewed missense c.1789 p.D597H 1 NULL HMMPfam_BRCT;HMMPfam_VWA;HMMPfam_PARP;HMMPfam_VIT;superfamily_Domain of poly(ADP-ribose) polymerase;superfamily_BRCT domain;superfamily_vWA-like;superfamily_ADP-ribosylation - no_errors RNASE2 6036 genome.wustl.edu 36 14 20493879 20493879 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 14 20493879 20493879 T C SNP RNASE2 NM_002934 human genbank 54_36p 1 validated missense c.109 p.W37R 0.95 HMMPfam_RnaseA HMMPfam_RnaseA;superfamily_RNase A-like - no_errors MYH6 4624 genome.wustl.edu 36 14 22926590 22926590 + Silent SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 14 22926590 22926590 C G SNP MYH6 NM_002471 human genbank 54_36p -1 validated silent c.4638 p.L1546 1 HMMPfam_Myosin_tail_1 HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Prefoldin;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors GPHN 10243 genome.wustl.edu 36 14 66595242 66595242 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 14 66595242 66595242 T A SNP GPHN NM_020806 human genbank 54_36p 1 reviewed missense c.1130 p.I377N 1 HMMPfam_MoeA_N HMMPfam_MoCF_biosynth;superfamily_Molybdenum cofactor biosynthesis proteins;HMMPfam_MoeA_N;superfamily_MoeA N-terminal region -like;HMMPfam_MoeA_C;superfamily_MoeA C-terminal domain-like - no_errors PNMA1 9240 genome.wustl.edu 36 14 73249466 73249466 + Silent SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 14 73249466 73249466 G A SNP PNMA1 NM_006029 human genbank 54_36p -1 validated silent c.630 p.A210 0.33 NULL superfamily_Globin-like - no_errors BATF 10538 genome.wustl.edu 36 14 75061284 75061284 + Silent SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 14 75061284 75061284 G C SNP BATF NM_006399 human genbank 54_36p 1 reviewed silent c.168 p.L56 1 HMMPfam_bZIP_1 superfamily_A DNA-binding domain in eukaryotic transcription factors;HMMPfam_bZIP_1 - no_errors RPS6KA5 9252 genome.wustl.edu 36 14 90456321 90456321 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 14 90456321 90456321 G C SNP RPS6KA5 NM_004755 human genbank 54_36p -1 validated missense c.788 p.S263C 1 HMMPfam_Pkinase HMMPfam_Pkinase;HMMPfam_Pkinase_C;superfamily_Protein kinase-like (PK-like) - no_errors SNORD116-6 100033418 genome.wustl.edu 36 15 22861302 22861302 + RNA DEL G G - Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G - G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 15 22861302 22861302 G - DEL SNORD116-6 NR_003321 human genbank 54_36p 1 provisional rna NULL NULL 0.998 - - (deletion:rna[22861265,22861362]) no_errors SEPT1 1731 genome.wustl.edu 36 16 30298346 30298346 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 16 30298346 30298346 G C SNP SEPT1 NM_052838 human genbank 54_36p -1 reviewed missense c.671 p.P224R 1 HMMPfam_Septin HMMPfam_Septin;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors CES3 23491 genome.wustl.edu 36 16 65555855 65555855 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 16 65555855 65555855 G T SNP CES3 NM_024922 human genbank 54_36p 1 validated missense c.655 p.D219Y 0.886 HMMPfam_COesterase HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases - no_errors NFAT5 10725 genome.wustl.edu 36 16 68159941 68159941 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 16 68159941 68159941 G A SNP NFAT5 NM_138713 human genbank 54_36p 1 reviewed missense c.116 p.G39E 1 NULL - - no_errors SUPT6H 6830 genome.wustl.edu 36 17 24024598 24024598 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 17 24024598 24024598 G A SNP SUPT6H NM_003170 human genbank 54_36p 1 validated missense c.52 p.D18N 0.99 NULL HMMPfam_SH2;HMMPfam_S1;superfamily_Nucleic acid-binding proteins;superfamily_SH2 domain - no_errors PNMT 5409 genome.wustl.edu 36 17 35079886 35079886 + Silent SNP A A T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 17 35079886 35079886 A T SNP PNMT NM_002686 human genbank 54_36p 1 reviewed silent c.567 p.P189 0.99 HMMPfam_NNMT_PNMT_TEMT HMMPfam_NNMT_PNMT_TEMT;superfamily_S-adenosyl-L-methionine-dependent methyltransferases - no_errors RAB37 326624 genome.wustl.edu 36 17 70253088 70253088 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 17 70253088 70253088 G T SNP RAB37 NM_001006638 human genbank 54_36p 1 validated missense c.615 p.Q205H 1 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7517747 7517747 + Nonsense_Mutation SNP G A A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 17 7517747 7517747 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed nonsense c.916 p.R306* 1 NULL superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors KATNAL2 83473 genome.wustl.edu 36 18 42843400 42843400 + Silent SNP A A G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 18 42843400 42843400 A G SNP KATNAL2 NM_031303 human genbank 54_36p 1 provisional silent c.393 p.E131 0.98 NULL - - no_errors AP1M2 10053 genome.wustl.edu 36 19 10550606 10550606 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 19 10550606 10550606 C G SNP AP1M2 NM_005498 human genbank 54_36p -1 reviewed missense c.850 p.E284Q 1 NULL - - no_errors EMR3 84658 genome.wustl.edu 36 19 14633798 14633798 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 19 14633798 14633798 T G SNP EMR3 NM_032571 human genbank 54_36p -1 reviewed missense c.332 p.N111T HMMPfam_EGF_CA HMMPfam_GPS;HMMPfam_7tm_2;HMMPfam_EGF_CA;superfamily_EGF/Laminin;superfamily_Family A G protein-coupled receptor-like - no_errors LOC646864 646864 genome.wustl.edu 36 19 22832856 22832856 + Silent SNP T T G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 19 22832856 22832856 T G SNP LOC646864 XM_001726885 human genbank 54_36p 1 model silent c.1410 p.T470 NULL - - no_errors ARHGAP33 115703 genome.wustl.edu 36 19 40969697 40969697 + Missense_Mutation SNP G G A Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 19 40969697 40969697 G A SNP SNX26 NM_052948 human genbank 54_36p 1 reviewed missense c.2002 p.G668S 0.117 NULL HMMPfam_RhoGAP,HMMPfam_SH3_1,superfamily_SH3-domain,superfamily_GTPase activation domain GAP,superfamily_PX domain - no_errors PRODH2 58510 genome.wustl.edu 36 19 40982818 40982818 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 19 40982818 40982818 G A SNP PRODH2 NM_021232 human genbank 54_36p -1 reviewed missense c.1573 p.R525W 0.004 NULL - - no_errors XRCC1 7515 genome.wustl.edu 36 19 48748875 48748875 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 19 48748875 48748875 C G SNP XRCC1 NM_006297 human genbank 54_36p -1 reviewed missense c.737 p.R246T 1 NULL superfamily_Galactose-binding domain-like,superfamily_BRCT domain,BRCT,HMMPfam_BRCT,XRCC1_N,HMMPfam_XRCC1_N - no_errors ZNF677 342926 genome.wustl.edu 36 19 58432476 58432476 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 19 58432476 58432476 G T SNP ZNF677 NM_182609 human genbank 54_36p -1 provisional missense c.1316 p.A439D 0.02 HMMPfam_zf-C2H2 HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers - no_errors ZIM2 23619 genome.wustl.edu 36 19 61977939 61977939 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 19 61977939 61977939 G A SNP ZIM2 NM_015363 human genbank 54_36p -1 provisional nonsense c.1513 p.R505* HMMPfam_zf-C2H2 HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers - no_errors PEG3 5178 genome.wustl.edu 36 19 62017244 62017244 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 19 62017244 62017244 C T SNP PEG3 NM_006210 human genbank 54_36p -1 provisional missense c.4378 p.D1460N 0.99 NULL HMMPfam_SCAN;HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors C3 718 genome.wustl.edu 36 19 6635793 6635793 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 19 6635793 6635793 G T SNP C3 NM_000064 human genbank 54_36p -1 reviewed missense c.4022 p.T1341N 1 NULL HMMPfam_ANATO;superfamily_Anaphylotoxins (complement system);HMMPfam_NTR;HMMPfam_A2M;HMMPfam_A2M_N;superfamily_Terpenoid cyclases/Protein prenyltransferases;superfamily_TIMP-like;HMMPfam_A2M_recep;superfamily_Alpha-macroglobulin receptor domain;HMMPfam_A2M_N_2;HMMPfam_A2M_comp - no_errors TBC1D8 11138 genome.wustl.edu 36 2 101073171 101073171 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 2 101073171 101073171 T C SNP TBC1D8 NM_001102426 human genbank 54_36p -1 validated missense c.215 p.Q72R 1 NULL - - no_errors RNF149 284996 genome.wustl.edu 36 2 101278050 101278050 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 2 101278050 101278050 C T SNP RNF149 NM_173647 human genbank 54_36p -1 provisional missense c.486 p.M162I 1 NULL - - no_errors POTEF 728378 genome.wustl.edu 36 2 130549240 130549240 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 2 130549240 130549240 G A SNP POTEF NM_001099771 human genbank 54_36p -1 validated nonsense c.2275 p.Q759* 1 NULL - - no_errors LOC653781 653781 genome.wustl.edu 36 2 131095591 131095591 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 2 131095591 131095591 C A SNP LOC653781 XM_929706 human genbank 54_36p 1 model missense c.889 p.Q297K 0 NULL - - no_errors ITGA4 3676 genome.wustl.edu 36 2 182068837 182068837 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 2 182068837 182068837 G T SNP ITGA4 NM_000885 human genbank 54_36p 1 reviewed nonsense c.1468 p.G490* 1 HMMPfam_Integrin_alpha2 HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain - no_errors TNS1 7145 genome.wustl.edu 36 2 218458127 218458127 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 2 218458127 218458127 C A SNP TNS1 NM_022648 human genbank 54_36p -1 reviewed missense c.747 p.K249N 1 NULL - - no_errors USP40 55230 genome.wustl.edu 36 2 234096600 234096600 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 2 234096600 234096600 C G SNP USP40 NM_018218 human genbank 54_36p -1 validated missense c.1948 p.E650Q 0.02 NULL - - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region PASK 23178 genome.wustl.edu 36 2 241725336 241725336 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 2 241725336 241725336 C T SNP PASK NM_015148 human genbank 54_36p -1 validated missense c.893 p.R298K 0.996 NULL HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain) - no_errors ALLC 55821 genome.wustl.edu 36 2 3721230 3721231 + Missense_Mutation DNP GG GG TT novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 GG GG GG TT GG GG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 2 3721230 3721231 GG TT DNP ALLC NM_018436 human genbank 54_36p 1 validated missense c.560_561 p.W187F 1.000:0.995 NULL - - no_errors DEFB125 245938 genome.wustl.edu 36 20 24997 24997 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 20 24997 24997 C T SNP DEFB125 NM_153325 human genbank 54_36p 1 reviewed missense c.410 p.S137F NULL - - no_errors DEFB118 117285 genome.wustl.edu 36 20 29424371 29424371 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 20 29424371 29424371 C T SNP DEFB118 NM_054112 human genbank 54_36p 1 provisional nonsense c.109 p.Q37* 0.01 NULL - - no_errors KIAA1755 85449 genome.wustl.edu 36 20 36303062 36303062 + Silent SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 20 36303062 36303062 G A SNP KIAA1755 NM_001029864 human genbank 54_36p -1 predicted silent c.885 p.G295 NULL - - no_errors ZBED4 9889 genome.wustl.edu 36 22 48665385 48665385 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 22 48665385 48665385 C A SNP ZBED4 NM_014838 human genbank 54_36p 1 validated missense c.2071 p.Q691K 1 NULL HMMPfam_zf-BED;HMMPfam_hATC - no_errors CD200R1L 344807 genome.wustl.edu 36 3 114028930 114028930 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 3 114028930 114028930 T C SNP CD200R1L NM_001008784 human genbank 54_36p -1 validated missense c.404 p.H135R NULL - - no_errors LOC100131360 100131360 genome.wustl.edu 36 3 197209357 197209357 + RNA SNP T T A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 3 197209357 197209357 T A SNP LOC100131360 XR_037733 human genbank 54_36p 1 model rna NULL NULL 0.96 - - - pseudogene TCTEX1D2 255758 genome.wustl.edu 36 3 197502604 197502604 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 3 197502604 197502604 G C SNP TCTEX1D2 NM_152773 human genbank 54_36p -1 provisional missense c.420 p.F140L 1 NULL - - no_errors ZNF619 285267 genome.wustl.edu 36 3 40503387 40503387 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 3 40503387 40503387 G A SNP ZNF619 NM_173656 human genbank 54_36p 1 validated missense c.334 p.G112R NULL - - no_errors LARS2 23395 genome.wustl.edu 36 3 45493047 45493047 + Silent SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 3 45493047 45493047 C T SNP LARS2 NM_015340 human genbank 54_36p 1 reviewed silent c.942 p.I314 1 NULL HMMPfam_tRNA-synt_1;superfamily_ValRS/IleRS/LeuRS editing domain;superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases;HMMPfam_Anticodon_1;HMMPfam_tRNA-synt_1g;superfamily_Nucleotidylyl transferase - no_errors ITPR1 3708 genome.wustl.edu 36 3 4689842 4689842 + Silent SNP A A C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 3 4689842 4689842 A C SNP ITPR1 NM_001099952 human genbank 54_36p 1 validated silent c.2227 p.R743 0.316 NULL - - no_errors USP19 10869 genome.wustl.edu 36 3 49128266 49128266 + Silent SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 3 49128266 49128266 C T SNP USP19 NM_006677 human genbank 54_36p -1 provisional silent c.1278 p.E426 1 NULL - - no_errors USP4 7375 genome.wustl.edu 36 3 49337406 49337406 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 3 49337406 49337406 T G SNP USP4 NM_003363 human genbank 54_36p -1 validated missense c.558 p.K186N 1 HMMPfam_DUF1055 HMMPfam_UCH;HMMPfam_DUF1055;superfamily_Cysteine proteinases - no_errors ITIH4 3700 genome.wustl.edu 36 3 52838274 52838274 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 3 52838274 52838274 G T SNP ITIH4 NM_002218 human genbank 54_36p -1 validated missense c.152 p.T51K 1 NULL - - no_errors DCAF16 54876 genome.wustl.edu 36 4 17414271 17414271 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 4 17414271 17414271 T C SNP C4orf30 NM_017741 human genbank 54_36p -1 predicted missense c.592 p.T198A 0.998 NULL - - no_errors UGT2A3 79799 genome.wustl.edu 36 4 69851681 69851681 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 4 69851681 69851681 G C SNP UGT2A3 NM_024743 human genbank 54_36p -1 validated missense c.387 p.I129M HMMPfam_UDPGT HMMPfam_UDPGT;superfamily_UDP-Glycosyltransferase/glycogen phosphorylase - no_errors NPFFR2 10886 genome.wustl.edu 36 4 73232187 73232187 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 4 73232187 73232187 T C SNP NPFFR2 NM_004885 human genbank 54_36p 1 reviewed missense c.1363 p.C455R 1 NULL - - no_errors C4orf23 152992 genome.wustl.edu 36 4 8516628 8516628 + Missense_Mutation SNP C C T Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 4 8516628 8516628 C T SNP C4orf23 NM_152544 human genbank 54_36p 1 predicted missense c.44 p.P15L 0.661 NULL - - no_errors ENSG00000205035 0 genome.wustl.edu 36 11 49554657 49554657 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 49554657 49554657 T A SNP ENSG00000205035 ENST00000357667 human ensembl 54_36p 1 novel missense c.284 p.I95K 1 NULL HMMPfam_ANF_receptor;superfamily_SSF53822 - no_start_codon:no_stop_codon ENSG00000205035 0 genome.wustl.edu 36 11 49554660 49554660 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 49554660 49554660 G A SNP ENSG00000205035 ENST00000357667 human ensembl 54_36p 1 novel missense c.287 p.R96K 1 NULL HMMPfam_ANF_receptor;superfamily_SSF53822 - no_start_codon:no_stop_codon SNORA13 654322 genome.wustl.edu 36 5 111525088 111525088 + RNA SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 5 111525088 111525088 G C SNP SNORA13 NR_002922 human genbank 54_36p 1 provisional rna NULL NULL 1 - - - no_errors TRPC7 57113 genome.wustl.edu 36 5 135720346 135720346 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 5 135720346 135720346 T A SNP TRPC7 ENST00000265193 human ensembl 54_36p -1 known missense c.626 p.D209V 1 NULL - - no_errors PCDHGC4 56098 genome.wustl.edu 36 5 140845157 140845157 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 5 140845157 140845157 A T SNP PCDHGC4 NM_018928 human genbank 54_36p 1 reviewed missense c.233 p.D78V 1 NULL - - no_errors FBXO38 81545 genome.wustl.edu 36 5 147800984 147800984 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 5 147800984 147800984 G A SNP FBXO38 NM_205836 human genbank 54_36p 1 validated missense c.3379 p.D1127N 1 NULL - - no_errors KIF4B 285643 genome.wustl.edu 36 5 154374310 154374310 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 5 154374310 154374310 G A SNP KIF4B NM_001099293 human genbank 54_36p 1 provisional missense c.698 p.R233H 0.97 NULL - - no_errors CYFIP2 26999 genome.wustl.edu 36 5 156700682 156700682 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 5 156700682 156700682 C G SNP CYFIP2 ENST00000347377 human ensembl 54_36p 1 known missense c.2612 p.T871S 1 NULL - - no_errors DOCK2 1794 genome.wustl.edu 36 5 169368078 169368078 + Splice_Site SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 5 169368078 169368078 G T SNP DOCK2 NM_004946 human genbank 54_36p 1 validated splice_site c.3073-1 e31-1 1 - - - no_errors C6 729 genome.wustl.edu 36 5 41195071 41195071 + Missense_Mutation SNP T T G Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T G T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 5 41195071 41195071 T G SNP C6 NM_000065 human genbank 54_36p -1 reviewed missense c.1726 p.T576P 0.001 HMMPfam_TSP_1 HMMPfam_Sushi,TSP_1,HMMPfam_TSP_1,MACPF,HMMPfam_MACPF,Ldl_recept_a,HMMPfam_Ldl_recept_a,Kazal_2,HMMPfam_Kazal_2,Sushi - no_errors GCNT4 51301 genome.wustl.edu 36 5 74360756 74360756 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 5 74360756 74360756 G C SNP GCNT4 NM_016591 human genbank 54_36p -1 validated missense c.863 p.S288C 1 HMMPfam_Branch HMMPfam_Branch - no_errors OR5AK3P 81228 genome.wustl.edu 36 11 56495401 56495401 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 11 56495401 56495401 T C SNP OR5AK3P ENST00000326876 human ensembl 54_36p 1 known missense c.301 p.F101L 0.09 NULL - - no_errors THEMIS 387357 genome.wustl.edu 36 6 128263714 128263714 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 6 128263714 128263714 C A SNP C6orf190 NM_001010923 human genbank 54_36p -1 validated missense c.57 p.R19S 0.94 NULL - - no_errors KIF13A 63971 genome.wustl.edu 36 6 17896057 17896057 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 6 17896057 17896057 C G SNP KIF13A NM_022113 human genbank 54_36p -1 validated missense c.3290 p.R1097T 1 NULL - - no_errors HIST1H2BH 8345 genome.wustl.edu 36 6 26359889 26359889 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 6 26359889 26359889 C T SNP HIST1H2BH NM_003524 human genbank 54_36p 1 reviewed missense c.32 p.P11L 1 NULL - - no_errors EFHC1 114327 genome.wustl.edu 36 6 52425561 52425561 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 6 52425561 52425561 T A SNP EFHC1 NM_018100 human genbank 54_36p 1 validated missense c.690 p.D230E 1 NULL - - no_errors ZNF800 168850 genome.wustl.edu 36 7 126801698 126801698 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 7 126801698 126801698 G A SNP ZNF800 NM_176814 human genbank 54_36p -1 validated missense c.928 p.H310Y 1 NULL - - no_errors CTAGE4 100128553 genome.wustl.edu 36 7 143513727 143513727 + RNA SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 7 143513727 143513727 C T SNP CTAGE4 XR_038147 human genbank 54_36p 1 model rna NULL NULL 0.91 - - - no_errors ZNF716 441234 genome.wustl.edu 36 7 57533681 57533681 + Silent SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 7 57533681 57533681 C A SNP ZNF716 ENST00000331425 human ensembl 54_36p 1 known silent c.1458 p.G486 0.399 NULL - - no_stop_codon GTF2IRD2B 389524 genome.wustl.edu 36 7 74201689 74201689 + Silent SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 7 74201689 74201689 G A SNP GTF2IRD2B NM_001003795 human genbank 54_36p 1 reviewed silent c.1500 p.S500 0.02 NULL - - no_errors PCLO 27445 genome.wustl.edu 36 7 82602493 82602493 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 7 82602493 82602493 G T SNP PCLO NM_033026 human genbank 54_36p -1 validated nonsense c.2309 p.S770* 0.01 NULL - - no_errors PCLO 27445 genome.wustl.edu 36 7 82622189 82622189 + Silent SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 7 82622189 82622189 C T SNP PCLO NM_033026 human genbank 54_36p -1 validated silent c.1704 p.Q568 0.03 NULL - - no_errors ABCB4 5244 genome.wustl.edu 36 7 86906923 86906923 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 7 86906923 86906923 T C SNP ABCB4 NM_018849 human genbank 54_36p -1 reviewed missense c.1727 p.D576G 1 HMMPfam_ABC_tran HMMPfam_ABC_membrane;HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain - no_errors VPS13B 157680 genome.wustl.edu 36 8 100356530 100356530 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 8 100356530 100356530 C A SNP VPS13B NM_017890 human genbank 54_36p 1 reviewed missense c.2696 p.S899Y 1 NULL - - no_errors DENND3 22898 genome.wustl.edu 36 8 142245538 142245538 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 8 142245538 142245538 C T SNP DENND3 NM_014957 human genbank 54_36p 1 validated missense c.1381 p.H461Y NULL HMMPfam_DENN;HMMPfam_WD40;HMMPfam_dDENN;superfamily_WD40 repeat-like - no_errors NAT2 10 genome.wustl.edu 36 8 18302467 18302467 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 8 18302467 18302467 T C SNP NAT2 NM_000015 human genbank 54_36p 1 reviewed missense c.674 p.L225S 1 HMMPfam_Acetyltransf_2 HMMPfam_Acetyltransf_2,superfamily_Cysteine proteinases - no_errors DOCK5 80005 genome.wustl.edu 36 8 25192019 25192019 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 8 25192019 25192019 T C SNP DOCK5 NM_024940 human genbank 54_36p 1 validated missense c.242 p.I81T 1 NULL superfamily_SH3-domain;superfamily_ARM repeat;HMMPfam_SH3_1 - no_errors ADRA1A 148 genome.wustl.edu 36 8 26777636 26777636 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 8 26777636 26777636 G C SNP ADRA1A NM_033303 human genbank 54_36p -1 reviewed missense c.768 p.H256Q 0.987 HMMPfam_7tm_1 HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like - no_errors ZFHX4 79776 genome.wustl.edu 36 8 77930712 77930712 + Silent SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 8 77930712 77930712 C T SNP ZFHX4 NM_024721 human genbank 54_36p 1 validated silent c.8865 p.G2955 0.977 NULL - - no_errors PPP1R3B 79660 genome.wustl.edu 36 8 9035843 9035843 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 8 9035843 9035843 C A SNP PPP1R3B NM_024607 human genbank 54_36p -1 validated missense c.729 p.M243I NULL HMMPfam_CBM_21 - no_errors ENSG00000219492 0 genome.wustl.edu 36 4 8998011 8998011 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 4 8998011 8998011 T A SNP ENSG00000219492 ENST00000402465 human ensembl 54_36p -1 known missense c.101 p.D34V 0.96 NULL - - no_stop_codon PALM2-AKAP2 445815 genome.wustl.edu 36 9 111727169 111727169 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 9 111727169 111727169 C A SNP PALM2-AKAP2 NM_007203 human genbank 54_36p 1 validated missense c.380 p.S127Y 0.99 NULL - - no_errors HSPA5 3309 genome.wustl.edu 36 9 127040895 127040895 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 9 127040895 127040895 C A SNP HSPA5 NM_005347 human genbank 54_36p -1 validated missense c.1029 p.Q343H 1 HMMPfam_HSP70 HMMPfam_HSP70;superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain;superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain;superfamily_Actin-like ATPase domain - no_errors PIGO 84720 genome.wustl.edu 36 9 35081323 35081323 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 9 35081323 35081323 C T SNP PIGO NM_032634 human genbank 54_36p -1 reviewed missense c.2561 p.R854H 1 NULL HMMPfam_Phosphodiest;superfamily_Alkaline phosphatase-like - no_errors SECISBP2 79048 genome.wustl.edu 36 9 91133588 91133588 + Silent SNP A A G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 9 91133588 91133588 A G SNP SECISBP2 NM_024077 human genbank 54_36p 1 reviewed silent c.768 p.R256 0.17 NULL - - no_errors HIATL1 84641 genome.wustl.edu 36 9 96240563 96240563 + Silent SNP G G A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 9 96240563 96240563 G A SNP HIATL1 NM_032558 human genbank 54_36p 1 validated silent c.327 p.R109 1 NULL - - no_errors DMRT3 58524 genome.wustl.edu 36 9 980732 980732 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 9 980732 980732 C A SNP DMRT3 NM_021240 human genbank 54_36p 1 validated missense c.1146 p.S382R 1 NULL HMMPfam_DM;superfamily_Cysteine-rich DNA binding domain (DM domain);HMMPfam_DMA;superfamily_UBA-like - no_errors NRK 203447 genome.wustl.edu 36 X 105019014 105019014 + Silent SNP C C T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 X 105019014 105019014 C T SNP NRK ENST00000243300 human ensembl 54_36p 1 known silent c.324 p.S108 0.98 HMMPfam_Pkinase HMMPfam_Pkinase;superfamily_p53-like transcription factors;superfamily_Protein kinase-like (PK-like);Pkinase;CNH;HMMPfam_CNH - no_errors BMX 660 genome.wustl.edu 36 X 15450513 15450513 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 X 15450513 15450513 A C SNP BMX NM_001721 human genbank 54_36p 1 validated missense c.634 p.S212R NULL SH2;HMMPfam_SH2;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;BTK;HMMPfam_BTK;PH;HMMPfam_PH;Protein kinase-like (PK-like);superfamily_Protein kinase-like (PK-like);PH domain-like;superfamily_PH domain-like;SH2 domain;superfamily_SH2 domain - no_errors MAP3K15 389840 genome.wustl.edu 36 X 19290830 19290831 + Frame_Shift_Del DEL AG AG - novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 AG AG AG - AG AG Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 X 19290830 19290831 AG - DEL MAP3K15 NM_001001671 human genbank 54_36p -1 validated frame_shift_del c.2051_2050 p.L684fs 0.287:0.230 NULL Pkinase;HMMPfam_Pkinase (deletion:cds_exon[19290777;19290889]) no_errors CCNB3 85417 genome.wustl.edu 36 X 50068608 50068608 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 X 50068608 50068608 G T SNP CCNB3 NM_033031 human genbank 54_36p 1 reviewed missense c.699 p.K233N 0.14 NULL Cyclin_C;HMMPfam_Cyclin_C;Cyclin_N;HMMPfam_Cyclin_N - no_errors SH3BGRL 6451 genome.wustl.edu 36 X 80419192 80419192 + Silent SNP A G G novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 X 80419192 80419192 A G SNP SH3BGRL NM_003022 human genbank 54_36p 1 validated silent c.99 p.G33 1 NULL - - no_errors TSPAN6 7105 genome.wustl.edu 36 X 99775091 99775091 + Silent SNP A A C novel Unknown TCGA-13-1488-01A-01W-0549-09 TCGA-13-1488-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 886a8c10-63cf-4cb2-83d2-5a99bbda193d ddb528a6-2be1-48e9-8a52-fc7dcbbb8201 X 99775091 99775091 A C SNP TSPAN6 NM_003270 human genbank 54_36p -1 reviewed silent c.552 p.T184 0.29 HMMPfam_Tetraspannin HMMPfam_Tetraspannin;superfamily_Tetraspanin - no_errors