Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ANKRD35	148741	genome.wustl.edu	36	1	144273633	144273633	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	144273633	144273633	A	T	SNP	ANKRD35	NM_144698	human	genbank	54_36p	1	validated	missense	c.1964	p.E655V	0.51	NULL	-	-	no_errors
PGLYRP4	57115	genome.wustl.edu	36	1	151584401	151584401	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	151584401	151584401	G	A	SNP	PGLYRP4	NM_020393	human	genbank	54_36p	-1	validated	missense	c.221	p.T74M		NULL	-	-	no_errors
IQGAP3	128239	genome.wustl.edu	36	1	154799639	154799639	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	154799639	154799639	G	A	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	silent	c.709	p.L237	1	NULL	-	-	no_errors
SELE	6401	genome.wustl.edu	36	1	167963921	167963921	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	167963921	167963921	C	A	SNP	SELE	NM_000450	human	genbank	54_36p	-1	reviewed	missense	c.1181	p.C394F	1	HMMPfam_Sushi	HMMPfam_Sushi;HMMPfam_Lectin_C;HMMPfam_EGF	-	no_errors
ATP2B4	493	genome.wustl.edu	36	1	201939470	201939470	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	201939470	201939470	G	C	SNP	ATP2B4	NM_001684	human	genbank	54_36p	1	reviewed	missense	c.1005	p.E335D	1	HMMPfam_E1-E2_ATPase	HMMPfam_Cation_ATPase_N;HMMPfam_Hydrolase;HMMPfam_Cation_ATPase_C;HMMPfam_E1-E2_ATPase;superfamily_HAD-like;superfamily_Calcium ATPase transduction domain A;superfamily_Metal cation-transporting ATPase ATP-binding domain N;superfamily_Calcium ATPase transmembrane domain M	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	209044047	209044047	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	209044047	209044047	A	G	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	missense	c.1547	p.L516P	1	NULL	-	-	no_errors
GNPAT	8443	genome.wustl.edu	36	1	229474686	229474686	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	229474686	229474686	G	T	SNP	GNPAT	NM_014236	human	genbank	54_36p	1	reviewed	missense	c.1528	p.V510F	0.998	NULL	HMMPfam_Acyltransferase,superfamily_Glycerol-3-phosphate (1)-acyltransferase	-	no_errors
ACTN2	88	genome.wustl.edu	36	1	234972931	234972931	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	234972931	234972931	G	T	SNP	ACTN2	NM_001103	human	genbank	54_36p	1	reviewed	missense	c.1220	p.R407M	0.78	NULL	-	-	no_errors
MDS2	259283	genome.wustl.edu	36	1	23838327	23838327	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	23838327	23838327	A	G	SNP	MDS2	ENST00000374555	human	ensembl	54_36p	1	known	missense	c.145	p.S49G		NULL	-	-	no_errors
OR2G6	391211	genome.wustl.edu	36	1	246752148	246752148	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	246752148	246752148	C	T	SNP	OR2G6	NM_001013355	human	genbank	54_36p	1	validated	missense	c.578	p.T193I		NULL	-	-	no_errors
SPOCD1	90853	genome.wustl.edu	36	1	32029433	32029433	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	32029433	32029433	C	T	SNP	SPOCD1	ENST00000294514	human	ensembl	54_36p	-1	known	missense	c.863	p.R288K	0.86	NULL	-	-	no_start_codon
WDR78	79819	genome.wustl.edu	36	1	67131676	67131676	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	67131676	67131676	G	T	SNP	WDR78	NM_024763	human	genbank	54_36p	-1	validated	missense	c.354	p.D118E	0.008	NULL	-	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	69916717	69916717	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	1	69916717	69916717	G	T	SNP	LRRC7	ENST00000370958	human	ensembl	54_36p	1	known	missense	c.68	p.R23L	0.99	NULL	-	-	no_errors
XPNPEP1	7511	genome.wustl.edu	36	10	111620629	111620629	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	10	111620629	111620629	G	C	SNP	XPNPEP1	NM_020383	human	genbank	54_36p	-1	provisional	missense	c.1417	p.R473G	1	NULL	-	-	no_errors
ATRNL1	26033	genome.wustl.edu	36	10	116879136	116879136	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	10	116879136	116879136	T	C	SNP	ATRNL1	NM_207303	human	genbank	54_36p	1	validated	silent	c.678	p.S226	0.1	NULL	HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_Lectin_C;HMMPfam_Laminin_EGF;HMMPfam_PSI;HMMPfam_EGF;HMMPfam_Kelch_1;superfamily_Galactose oxidase central domain;HMMPfam_Kelch_2;HMMPfam_EGF_2;superfamily_Plexin repeat;superfamily_C-type lectin-like;superfamily_EGF/Laminin	-	no_errors
TACC2	10579	genome.wustl.edu	36	10	123832305	123832305	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	10	123832305	123832305	G	A	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	silent	c.300	p.P100		NULL	HMMPfam_TACC	-	no_errors
KIAA1274	27143	genome.wustl.edu	36	10	71968077	71968077	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	10	71968077	71968077	G	T	SNP	KIAA1274	NM_014431	human	genbank	54_36p	1	validated	missense	c.1359	p.W453C	1	NULL	superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
KBTBD3	143879	genome.wustl.edu	36	11	105434873	105434873	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	11	105434873	105434873	G	T	SNP	KBTBD3	NM_152433	human	genbank	54_36p	-1	validated	missense	c.162	p.F54L	1	NULL	-	-	no_errors
NCAM1	4684	genome.wustl.edu	36	11	112583779	112583779	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	11	112583779	112583779	T	C	SNP	NCAM1	ENST00000404693	human	ensembl	54_36p	1	known	missense	c.407	p.I136T	0.97	NULL	-	-	no_errors
IGSF22	283284	genome.wustl.edu	36	11	18693664	18693664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	11	18693664	18693664	C	G	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	missense	c.1422	p.E474D	0.99	HMMPfam_I-set	HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;superfamily_Immunoglobulin	-	no_errors
SLC5A12	159963	genome.wustl.edu	36	11	26651643	26651643	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	11	26651643	26651643	C	T	SNP	SLC5A12	NM_178498	human	genbank	54_36p	-1	validated	missense	c.1589	p.R530K	0	NULL	-	-	no_errors
OR4C12	283093	genome.wustl.edu	36	11	49960414	49960414	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	11	49960414	49960414	A	G	SNP	OR4C12	NM_001005270	human	genbank	54_36p	-1	provisional	missense	c.200	p.I67T	1	NULL	-	-	no_errors
OR6A2	8590	genome.wustl.edu	36	11	6772872	6772872	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	11	6772872	6772872	G	T	SNP	OR6A2	NM_003696	human	genbank	54_36p	-1	provisional	missense	c.644	p.P215Q	0.27	NULL	-	-	no_errors
P2RY6	5031	genome.wustl.edu	36	11	72686049	72686049	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	11	72686049	72686049	G	T	SNP	P2RY6	NM_004154	human	genbank	54_36p	1	reviewed	missense	c.838	p.A280S	0.881	NULL	-	-	no_errors
NUAK1	9891	genome.wustl.edu	36	12	104985028	104985028	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	12	104985028	104985028	G	C	SNP	NUAK1	NM_014840	human	genbank	54_36p	-1	validated	silent	c.1668	p.V556	0.05	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
KDM2B	84678	genome.wustl.edu	36	12	120362202	120362202	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	12	120362202	120362202	C	A	SNP	FBXL10	NM_032590	human	genbank	54_36p	-1	reviewed	missense	c.3670	p.D1224Y	1	NULL	-	-	no_errors
GOLGA3	2802	genome.wustl.edu	36	12	131883237	131883237	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	12	131883237	131883237	C	G	SNP	GOLGA3	NM_005895	human	genbank	54_36p	-1	reviewed	missense	c.2061	p.M687I	1	NULL	superfamily_Prefoldin;superfamily_HLH helix-loop-helix DNA-binding domain;superfamily_Spectrin repeat	-	no_errors
EPS8	2059	genome.wustl.edu	36	12	15727127	15727127	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	12	15727127	15727127	G	T	SNP	EPS8	NM_004447	human	genbank	54_36p	-1	reviewed	missense	c.26	p.P9H	1	NULL	HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_SAM/Pointed domain;HMMPfam_PTB;superfamily_PH domain-like	-	no_errors
TSPAN9	10867	genome.wustl.edu	36	12	3257869	3257869	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	12	3257869	3257869	G	T	SNP	TSPAN9	NM_006675	human	genbank	54_36p	1	reviewed	nonsense	c.85	p.G29*	1	HMMPfam_Tetraspannin	HMMPfam_Tetraspannin;superfamily_Tetraspanin	-	no_errors
KRT4	3851	genome.wustl.edu	36	12	51487226	51487226	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	12	51487226	51487226	C	A	SNP	KRT4	NM_002272	human	genbank	54_36p	-1	reviewed	missense	c.1679	p.S560I	0.95	NULL	-	-	no_errors
ERBB3	2065	genome.wustl.edu	36	12	54781659	54781659	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	12	54781659	54781659	T	A	SNP	ERBB3	NM_001982	human	genbank	54_36p	1	reviewed	missense	c.3582	p.D1194E	1	NULL	superfamily_Growth factor receptor domain;superfamily_Protein kinase-like (PK-like);superfamily_L domain-like;Recep_L_domain;HMMPfam_Recep_L_domain;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;Furin-like;HMMPfam_Furin-like	-	no_errors
LPCAT3	10162	genome.wustl.edu	36	12	6957772	6957772	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	12	6957772	6957772	C	G	SNP	LPCAT3	NM_005768	human	genbank	54_36p	-1	validated	missense	c.1032	p.W344C	1	NULL	HMMPfam_MBOAT	-	no_errors
NAP1L1	4673	genome.wustl.edu	36	12	74733342	74733342	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	12	74733342	74733342	T	G	SNP	NAP1L1	NM_004537	human	genbank	54_36p	-1	reviewed	missense	c.826	p.K276Q	1	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100512349	100512349	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	13	100512349	100512349	A	G	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.4727	p.L1576P	1	NULL	HMMPfam_Ion_trans;superfamily_Voltage-gated potassium channels	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18650417	18650417	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	13	18650417	18650417	A	G	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	missense	c.344	p.V115A	1	HMMPfam_Tubulin	HMMPfam_Tubulin;HMMPfam_Tubulin_C;superfamily_Tubulin nucleotide-binding domain-like;superfamily_Tubulin C-terminal domain-like	-	no_errors
ALG11	440138	genome.wustl.edu	36	13	51491273	51491273	+	Missense_Mutation	SNP	C	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	G	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	13	51491273	51491273	C	G	SNP	ALG11	NM_001004127	human	genbank	54_36p	1	provisional	missense	c.268	p.Q90E	1	NULL	HMMPfam_Glycos_transf_1;superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
TM9SF1	10548	genome.wustl.edu	36	14	23732000	23732000	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	14	23732000	23732000	G	A	SNP	TM9SF1	NM_006405	human	genbank	54_36p	-1	validated	missense	c.661	p.R221C	1	NULL	-	-	no_errors
CLEC14A	161198	genome.wustl.edu	36	14	37794218	37794218	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	14	37794218	37794218	C	A	SNP	CLEC14A	NM_175060	human	genbank	54_36p	-1	provisional	missense	c.761	p.G254V	0.01	NULL	-	-	no_errors
SPATA7	55812	genome.wustl.edu	36	14	87952878	87952878	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	14	87952878	87952878	T	G	SNP	SPATA7	NM_018418	human	genbank	54_36p	1	validated	silent	c.309	p.T103	0.15	NULL	-	-	no_errors
TJP1	7082	genome.wustl.edu	36	15	27799406	27799406	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	15	27799406	27799406	T	A	SNP	TJP1	NM_003257	human	genbank	54_36p	-1	validated	missense	c.2870	p.E957V	1	NULL	HMMPfam_ZU5;superfamily_SH3-domain;HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_Guanylate_kin;HMMPfam_SH3_2;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TYRO3	7301	genome.wustl.edu	36	15	39657412	39657412	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	15	39657412	39657412	C	G	SNP	TYRO3	NM_006293	human	genbank	54_36p	1	provisional	silent	c.2319	p.P773	1	HMMPfam_Pkinase_Tyr	HMMPfam_Pkinase_Tyr;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_Protein kinase-like (PK-like);HMMPfam_ig;superfamily_Immunoglobulin	-	no_errors
FLJ38723	255180	genome.wustl.edu	36	15	60331396	60331396	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	15	60331396	60331396	A	C	SNP	FLJ38723	XR_041381	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	no_errors
XYLT1	64131	genome.wustl.edu	36	16	17119016	17119016	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	16	17119016	17119016	G	C	SNP	XYLT1	NM_022166	human	genbank	54_36p	-1	validated	missense	c.2545	p.P849A	1	NULL	HMMPfam_Branch	-	no_errors
LOC728888	728888	genome.wustl.edu	36	16	29302839	29302839	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	16	29302839	29302839	G	A	SNP	LOC728888	XR_015889	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	no_errors
SRCAP	10847	genome.wustl.edu	36	16	30639033	30639033	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	16	30639033	30639033	C	T	SNP	SRCAP	NM_006662	human	genbank	54_36p	1	validated	missense	c.2867	p.S956F	1	NULL	-	-	no_errors
BBS2	583	genome.wustl.edu	36	16	55077050	55077050	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	16	55077050	55077050	T	C	SNP	BBS2	NM_031885	human	genbank	54_36p	-1	reviewed	missense	c.2012	p.N671S	1	NULL	superfamily_WD40 repeat-like;HMMPfam_FG-GAP	-	no_errors
CTCF	10664	genome.wustl.edu	36	16	66203446	66203446	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	16	66203446	66203446	G	C	SNP	CTCF	NM_006565	human	genbank	54_36p	1	reviewed	missense	c.873	p.E291D	1	NULL	HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MYH4	4622	genome.wustl.edu	36	17	10297840	10297840	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	10297840	10297840	T	G	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	missense	c.2779	p.T927P	0.96	NULL	HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Prefoldin;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYH2	4620	genome.wustl.edu	36	17	10381793	10381793	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	10381793	10381793	G	T	SNP	MYH2	NM_001100112	human	genbank	54_36p	-1	validated	missense	c.1501	p.Q501K	1	NULL	-	-	no_errors
ALDH3A2	224	genome.wustl.edu	36	17	19508856	19508856	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	19508856	19508856	A	G	SNP	ALDH3A2	NM_001031806	human	genbank	54_36p	1	reviewed	missense	c.1111	p.I371V	1	HMMPfam_Aldedh	HMMPfam_Aldedh;superfamily_ALDH-like	-	no_errors
CCDC55	84081	genome.wustl.edu	36	17	25536462	25536462	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	25536462	25536462	G	A	SNP	CCDC55	NM_032141	human	genbank	54_36p	1	validated	missense	c.1321	p.E441K	0.02	NULL	-	-	no_errors
ATAD5	79915	genome.wustl.edu	36	17	26228597	26228597	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	26228597	26228597	G	C	SNP	ATAD5	NM_024857	human	genbank	54_36p	1	provisional	missense	c.3822	p.Q1274H	0.16	NULL	HMMPfam_AAA;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACCN1	40	genome.wustl.edu	36	17	28372415	28372425	+	Frame_Shift_Del	DEL	AATATATCCAG	AATATATCCAG	-	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	AATATATCCAG	AATATATCCAG	AATATATCCAG	-	AATATATCCAG	AATATATCCAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	28372415	28372425	AATATATCCAG	-	DEL	ACCN1	NM_183377	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1376_1366	p.L456fs	1.000:1.000:1.000:1.000:0.998:0.998:1.000:1.000:1.000:1.000:0.998	NULL	-	(deletion:cds_exon[28372350;28372441])	no_errors
ACLY	47	genome.wustl.edu	36	17	37323524	37323524	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	37323524	37323524	C	G	SNP	ACLY	NM_001096	human	genbank	54_36p	-1	reviewed	missense	c.129	p.L43F	0.99	NULL	HMMPfam_CoA_binding;HMMPfam_Ligase_CoA;superfamily_Citrate synthase;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_Succinyl-CoA synthetase domains;superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
KCNJ16	3773	genome.wustl.edu	36	17	65639961	65639961	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	65639961	65639961	C	T	SNP	KCNJ16	NM_018658	human	genbank	54_36p	1	reviewed	silent	c.138	p.Y46	1	HMMPfam_IRK	HMMPfam_IRK;superfamily_E set domains;superfamily_Voltage-gated potassium channels	-	no_errors
OTOP3	347741	genome.wustl.edu	36	17	70455145	70455145	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	70455145	70455145	C	T	SNP	OTOP3	NM_178233	human	genbank	54_36p	1	provisional	missense	c.1600	p.L534F	1	NULL	-	-	no_errors
DNAH17	8632	genome.wustl.edu	36	17	74008900	74008900	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	74008900	74008900	C	A	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.5429	p.G1810V	1	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7514755	7514755	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	-	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	7514755	7514755	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.997	p.R333fs	0.03	HMMPfam_P53_tetramer	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	(deletion:cds_exon[7514652;7514758])	no_errors
CCDC57	284001	genome.wustl.edu	36	17	77739575	77739575	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	17	77739575	77739575	C	G	SNP	CCDC57	NM_198082	human	genbank	54_36p	-1	validated	missense	c.861	p.E287D	1	NULL	-	-	no_errors
NPC1	257641	genome.wustl.edu	36	18	19375349	19375349	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	18	19375349	19375349	C	A	SNP	NPC1	NM_000271	human	genbank	54_36p	-1	validated	silent	c.2292	p.A764	1	HMMPfam_Patched	HMMPfam_Patched;superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
LAMA3	3909	genome.wustl.edu	36	18	19701848	19701848	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	18	19701848	19701848	G	A	SNP	LAMA3	NM_198129	human	genbank	54_36p	1	reviewed	missense	c.4736	p.R1579Q	0.9	HMMPfam_Laminin_B	HMMPfam_Laminin_B;HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Galactose-binding domain-like;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_I;HMMPfam_Laminin_II;HMMPfam_Laminin_G_2;superfamily_Spectrin repeat;superfamily_EGF/Laminin	-	no_errors
MYOM1	8736	genome.wustl.edu	36	18	3092608	3092608	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	18	3092608	3092608	T	G	SNP	MYOM1	NM_003803	human	genbank	54_36p	-1	reviewed	missense	c.3439	p.N1147H	0.6	NULL	HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
LRRC30	339291	genome.wustl.edu	36	18	7221563	7221563	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	18	7221563	7221563	G	T	SNP	LRRC30	NM_001105581	human	genbank	54_36p	1	provisional	nonsense	c.427	p.E143*	1	NULL	-	-	no_errors
CACNA1A	773	genome.wustl.edu	36	19	13280060	13280060	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	19	13280060	13280060	C	A	SNP	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	missense	c.1790	p.W597L	1	HMMPfam_Ion_trans	HMMPfam_Ion_trans;HMMPfam_Ca_chan_IQ;superfamily_Voltage-gated potassium channels	-	no_errors
CCDC105	126402	genome.wustl.edu	36	19	14994816	14994816	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	19	14994816	14994816	G	A	SNP	CCDC105	NM_173482	human	genbank	54_36p	1	provisional	missense	c.1385	p.R462H	1	NULL	-	-	no_errors
CYP4F3	4051	genome.wustl.edu	36	19	15621867	15621867	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	19	15621867	15621867	C	T	SNP	CYP4F3	NM_000896	human	genbank	54_36p	1	reviewed	silent	c.792	p.H264	1	HMMPfam_p450	HMMPfam_p450;superfamily_Cytochrome P450	-	no_errors
SUPT5H	6829	genome.wustl.edu	36	19	44651750	44651750	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	19	44651750	44651750	C	T	SNP	SUPT5H	NM_003169	human	genbank	54_36p	1	validated	missense	c.1246	p.R416W	1	NULL	HMMPfam_Supt5,HMMPfam_KOW,superfamily_Translation proteins SH3-like domain,superfamily_N-utilization substance G protein NusG N-terminal domain	-	no_errors
ODC1	89874	genome.wustl.edu	36	2	10502581	10502581	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	10502581	10502581	T	C	SNP	ODC1	NM_002539	human	genbank	54_36p	-1	reviewed	missense	c.29	p.D10G	1	NULL	HMMPfam_Orn_DAP_Arg_deC;HMMPfam_Orn_Arg_deC_N;superfamily_Alanine racemase C-terminal domain-like;superfamily_PLP-binding barrel	-	no_errors
FAP	2191	genome.wustl.edu	36	2	162767902	162767902	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	162767902	162767902	C	G	SNP	FAP	NM_004460	human	genbank	54_36p	-1	reviewed	splice_site	c.1048-1	e13-1	1	-	-	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179309012	179309012	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	179309012	179309012	C	A	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	missense	c.10674	p.K3558N	0.99	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SDC1	6382	genome.wustl.edu	36	2	20268660	20268660	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	20268660	20268660	C	G	SNP	SDC1	NM_001006946	human	genbank	54_36p	-1	reviewed	missense	c.73	p.V25L	0.01	HMMPfam_Syndecan	HMMPfam_Syndecan	-	no_errors
APOB	338	genome.wustl.edu	36	2	21114419	21114419	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	21114419	21114419	A	G	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	silent	c.453	p.T151	0	HMMPfam_Vitellogenin_N	HMMPfam_Vitellogenin_N,HMMPfam_DUF1081,HMMPfam_DUF1943	-	no_errors
CCDC108	255101	genome.wustl.edu	36	2	219608429	219608429	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	219608429	219608429	A	T	SNP	CCDC108	NM_152389	human	genbank	54_36p	-1	provisional	missense	c.364	p.S122T		NULL	-	-	no_errors
SLC16A14	151473	genome.wustl.edu	36	2	230619465	230619465	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	230619465	230619465	C	A	SNP	SLC16A14	NM_152527	human	genbank	54_36p	-1	provisional	silent	c.621	p.A207	0.98	NULL	-	-	no_errors
SH3BP4	23677	genome.wustl.edu	36	2	235615550	235615550	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	235615550	235615550	G	A	SNP	SH3BP4	NM_014521	human	genbank	54_36p	1	reviewed	silent	c.1398	p.V466	0.8	NULL	-	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25316788	25316788	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	25316788	25316788	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2209	p.L737F	1	HMMPfam_DNA_methylase	HMMPfam_PWWP;HMMPfam_DNA_methylase;superfamily_FYVE/PHD zinc finger;superfamily_S-adenosyl-L-methionine-dependent methyltransferases;superfamily_Tudor/PWWP/MBT	-	no_errors
OTOF	9381	genome.wustl.edu	36	2	26543219	26543219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	26543219	26543219	G	A	SNP	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	missense	c.4367	p.S1456F	1	NULL	HMMPfam_C2;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);HMMPfam_FerB;HMMPfam_FerI	-	no_errors
FOSL2	2355	genome.wustl.edu	36	2	28488703	28488703	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	28488703	28488703	G	C	SNP	FOSL2	NM_005253	human	genbank	54_36p	1	reviewed	missense	c.865	p.E289Q	1	NULL	-	-	no_errors
HEATR5B	54497	genome.wustl.edu	36	2	37069439	37069439	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	37069439	37069439	G	C	SNP	HEATR5B	NM_019024	human	genbank	54_36p	-1	validated	missense	c.5765	p.P1922R	1	NULL	-	-	no_errors
DCTN1	1639	genome.wustl.edu	36	2	74448668	74448668	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	74448668	74448668	G	C	SNP	DCTN1	NM_004082	human	genbank	54_36p	-1	reviewed	missense	c.1953	p.S651R	1	NULL	HMMPfam_CAP_GLY;superfamily_Docking domain B of the erythromycin polyketide synthase (DEBS);superfamily_Spectrin repeat;superfamily_Cap-Gly domain	-	no_errors
AFF3	3899	genome.wustl.edu	36	2	99541780	99541780	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	2	99541780	99541780	C	G	SNP	AFF3	NM_001025108	human	genbank	54_36p	-1	reviewed	missense	c.3349	p.D1117H	1	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
NCOA6	23054	genome.wustl.edu	36	20	32793754	32793754	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	20	32793754	32793754	G	A	SNP	NCOA6	NM_014071	human	genbank	54_36p	-1	reviewed	missense	c.3967	p.R1323W	1	NULL	-	-	no_errors
IFT52	51098	genome.wustl.edu	36	20	41698011	41698011	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	20	41698011	41698011	C	G	SNP	IFT52	NM_016004	human	genbank	54_36p	1	validated	missense	c.955	p.P319A	1	NULL	-	-	no_errors
RIMS4	140730	genome.wustl.edu	36	20	42833460	42833460	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	20	42833460	42833460	G	A	SNP	RIMS4	NM_182970	human	genbank	54_36p	-1	validated	missense	c.106	p.R36W	1	NULL	-	-	no_errors
WFDC10B	280664	genome.wustl.edu	36	20	43746983	43746983	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	20	43746983	43746983	A	G	SNP	WFDC10B	NM_172131	human	genbank	54_36p	-1	reviewed	missense	c.170	p.I57T		NULL	-	-	no_errors
ANGPT4	51378	genome.wustl.edu	36	20	806888	806888	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	20	806888	806888	C	T	SNP	ANGPT4	NM_015985	human	genbank	54_36p	-1	reviewed	missense	c.1136	p.R379H	0.97	HMMPfam_Fibrinogen_C	HMMPfam_Fibrinogen_C;superfamily_DnaK suppressor protein DksA alpha-hairpin domain;superfamily_Fibrinogen C-terminal domain-like	-	no_errors
SAMSN1	64092	genome.wustl.edu	36	21	14792667	14792667	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	21	14792667	14792667	G	A	SNP	SAMSN1	NM_022136	human	genbank	54_36p	-1	validated	silent	c.886	p.L296	1	HMMPfam_SAM_2	superfamily_SH3-domain;superfamily_SAM/Pointed domain;HMMPfam_SAM_2;HMMPfam_SH3_2	-	no_errors
LTN1	26046	genome.wustl.edu	36	21	29280389	29280389	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	21	29280389	29280389	G	A	SNP	RNF160	NM_015565	human	genbank	54_36p	-1	validated	missense	c.287	p.T96I	1	NULL	HMMPfam_zf-C3HC4;superfamily_ARM repeat;superfamily_RING/U-box	-	no_errors
SYNJ1	8867	genome.wustl.edu	36	21	32979982	32979982	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	21	32979982	32979982	G	C	SNP	SYNJ1	NM_003895	human	genbank	54_36p	-1	validated	silent	c.1065	p.V355	1	NULL	HMMPfam_Syja_N;HMMPfam_Exo_endo_phos;HMMPfam_DUF1866;superfamily_RNA-binding domain RBD;superfamily_DNase I-like	-	no_errors
uc001wbi.2	0	genome.wustl.edu	36	14	21160479	21160479	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	14	21160479	21160479	G	A	SNP	uc001wbi.2	ENST00000390422	human	ensembl	54_36p	1	known	missense	c.245	p.S82N		NULL	-	-	no_stop_codon:bad_bp_length_for_coding_region
SEZ6L	23544	genome.wustl.edu	36	22	25036763	25036763	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	22	25036763	25036763	C	A	SNP	SEZ6L	NM_021115	human	genbank	54_36p	1	validated	missense	c.1642	p.Q548K	0.88	NULL	HMMPfam_Sushi;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;superfamily_Complement control module/SCR domain	-	no_errors
DMC1	11144	genome.wustl.edu	36	22	37294187	37294187	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	22	37294187	37294187	C	T	SNP	DMC1	NM_007068	human	genbank	54_36p	-1	reviewed	silent	c.21	p.V7	0.53	NULL	HMMPfam_HHH;superfamily_Rad51 N-terminal domain-like;HMMPfam_Rad51;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABI3BP	25890	genome.wustl.edu	36	3	102049161	102049161	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	3	102049161	102049161	G	T	SNP	ABI3BP	NM_015429	human	genbank	54_36p	-1	validated	missense	c.1497	p.S499R	0.1	NULL	HMMPfam_fn3;superfamily_Fibronectin type III	-	no_errors
DPPA2	151871	genome.wustl.edu	36	3	110509627	110509627	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	3	110509627	110509627	C	T	SNP	DPPA2	NM_138815	human	genbank	54_36p	-1	provisional	silent	c.600	p.K200	0.01	NULL	-	-	no_errors
CASR	846	genome.wustl.edu	36	3	123458629	123458629	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	3	123458629	123458629	G	A	SNP	CASR	NM_000388	human	genbank	54_36p	1	reviewed	missense	c.197	p.R66H	1	NULL	-	-	no_errors
GYG1	2992	genome.wustl.edu	36	3	150197238	150197238	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	3	150197238	150197238	A	T	SNP	GYG1	NM_004130	human	genbank	54_36p	1	provisional	missense	c.338	p.D113V	1	NULL	-	-	no_errors
GPR149	344758	genome.wustl.edu	36	3	155629157	155629157	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	3	155629157	155629157	G	T	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	silent	c.942	p.I314	1	NULL	-	-	no_errors
ZDHHC19	131540	genome.wustl.edu	36	3	197422537	197422537	+	Missense_Mutation	SNP	G	G	A		Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	3	197422537	197422537	G	A	SNP	ZDHHC19	NM_001039617	human	genbank	54_36p	-1	validated	missense	c.47	p.P16L	0	NULL	-	-	no_errors
NEK10	152110	genome.wustl.edu	36	3	27191211	27191211	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	3	27191211	27191211	C	A	SNP	NEK10	ENST00000396636	human	ensembl	54_36p	-1	known	missense	c.814	p.D272Y	1	NULL	-	-	no_errors
ITPR1	3708	genome.wustl.edu	36	3	4783381	4783381	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	3	4783381	4783381	A	G	SNP	ITPR1	NM_001099952	human	genbank	54_36p	1	validated	silent	c.5568	p.P1856		NULL	-	-	no_errors
USP19	10869	genome.wustl.edu	36	3	49129040	49129040	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	3	49129040	49129040	G	A	SNP	USP19	NM_006677	human	genbank	54_36p	-1	provisional	silent	c.828	p.P276	0.78	NULL	-	-	no_errors
OR5H15	403274	genome.wustl.edu	36	3	99370996	99370996	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	3	99370996	99370996	C	A	SNP	OR5H15	NM_001005515	human	genbank	54_36p	1	provisional	missense	c.763	p.L255I		NULL	-	-	no_errors
LOC100133317	100133317	genome.wustl.edu	36	7	32844570	32844570	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	7	32844570	32844570	G	A	SNP	LOC100133317	XR_039293	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
uc010djz.1	0	genome.wustl.edu	36	18	37469	37469	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	18	37469	37469	A	C	SNP	uc010djz.1	ENST00000308911	human	ensembl	54_36p	-1	known	missense	c.1256	p.V419G	1	NULL	HMMPfam_Tubulin;HMMPfam_Tubulin_C;superfamily_SSF52490;superfamily_SSF55307	-	no_errors
NHEDC1	150159	genome.wustl.edu	36	4	104047236	104047236	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	4	104047236	104047236	C	G	SNP	NHEDC1	NM_139173	human	genbank	54_36p	-1	reviewed	missense	c.1101	p.K367N	0.38	NULL	-	-	no_errors
FRAS1	80144	genome.wustl.edu	36	4	79570543	79570543	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	4	79570543	79570543	G	A	SNP	FRAS1	ENST00000380674	human	ensembl	54_36p	1	known	silent	c.4917	p.Q1639	0.35	NULL	-	-	no_errors
HTRA3	94031	genome.wustl.edu	36	4	8356898	8356898	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	4	8356898	8356898	T	G	SNP	HTRA3	NM_053044	human	genbank	54_36p	1	provisional	silent	c.1188	p.P396	1	NULL	-	-	no_errors
ARSI	340075	genome.wustl.edu	36	5	149657080	149657080	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	5	149657080	149657080	C	A	SNP	ARSI	NM_001012301	human	genbank	54_36p	-1	validated	missense	c.1600	p.G534W	0.04	NULL	-	-	no_errors
FBXL7	23194	genome.wustl.edu	36	5	15981325	15981325	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	5	15981325	15981325	C	T	SNP	FBXL7	NM_012304	human	genbank	54_36p	1	reviewed	missense	c.454	p.R152W	1	HMMPfam_F-box	HMMPfam_F-box;superfamily_RNI-like	-	no_errors
CMYA5	202333	genome.wustl.edu	36	5	79068119	79068119	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	5	79068119	79068119	C	T	SNP	CMYA5	NM_153610	human	genbank	54_36p	1	validated	missense	c.7775	p.T2592I		NULL	HMMPfam_SPRY;HMMPfam_fn3;superfamily_Fibronectin type III	-	no_errors
ROS1	6098	genome.wustl.edu	36	6	117822073	117822073	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	6	117822073	117822073	G	T	SNP	ROS1	NM_002944	human	genbank	54_36p	-1	reviewed	missense	c.1109	p.S370Y	1	NULL	Pkinase_Tyr;HMMPfam_Pkinase_Tyr;fn3;HMMPfam_fn3;Fibronectin type III;superfamily_Fibronectin type III;Protein kinase-like (PK-like);superfamily_Protein kinase-like (PK-like);YWTD domain;superfamily_YWTD domain	-	no_errors
MTHFD1L	25902	genome.wustl.edu	36	6	151399838	151399871	+	Frame_Shift_Del	DEL	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	-	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	-	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	6	151399838	151399871	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	-	DEL	MTHFD1L	NM_015440	human	genbank	54_36p	1	validated	frame_shift_del	c.2739_2772	p.L914fs	0.999:1.000:0.999:0.954:1.000:1.000:1.000:1.000:0.993:0.029:0.003:0.008:0.034:0.797:0.979:0.975:1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.153:0.895:0.886:0.582:0.997:1.000:0.989	HMMPfam_FTHFS	HMMPfam_FTHFS;HMMPfam_THF_DHG_CYH;HMMPfam_THF_DHG_CYH_C;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Aminoacid dehydrogenase-like N-terminal domain	(deletion:cds_exon[151399794;151399946])	no_errors
TMEM181	57583	genome.wustl.edu	36	6	158922008	158922008	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	6	158922008	158922008	G	T	SNP	TMEM181	NM_020823	human	genbank	54_36p	1	validated	missense	c.572	p.S191I	0.93	NULL	-	-	no_errors
FNDC1	84624	genome.wustl.edu	36	6	159590077	159590077	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	6	159590077	159590077	G	A	SNP	FNDC1	NM_032532	human	genbank	54_36p	1	validated	silent	c.4707	p.T1569	0.17	NULL	-	-	no_errors
GPLD1	2822	genome.wustl.edu	36	6	24570966	24570966	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	6	24570966	24570966	T	A	SNP	GPLD1	NM_001503	human	genbank	54_36p	-1	reviewed	silent	c.858	p.A286		NULL	HMMPfam_FG-GAP;superfamily_Integrin alpha N-terminal domain	-	no_errors
HIST1H2AM	8336	genome.wustl.edu	36	6	27968906	27968906	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	6	27968906	27968906	T	C	SNP	HIST1H2AM	NM_003514	human	genbank	54_36p	-1	reviewed	missense	c.1	p.M1V	0.99	NULL	-	-	no_errors
TRIM26	7726	genome.wustl.edu	36	6	30272432	30272432	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	6	30272432	30272432	C	T	SNP	TRIM26	NM_003449	human	genbank	54_36p	-1	validated	missense	c.605	p.R202Q	0.92	NULL	-	-	no_errors
TTK	7272	genome.wustl.edu	36	6	80777897	80777897	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	6	80777897	80777897	C	G	SNP	TTK	NM_003318	human	genbank	54_36p	1	provisional	nonsense	c.641	p.S214*	0.9	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like);superfamily_TPR-like	-	no_errors
EIF3IP1	442720	genome.wustl.edu	36	7	109387396	109387396	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	7	109387396	109387396	C	T	SNP	EIF3IP1	NR_003024	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.993	-	-	-	pseudogene
DOCK4	9732	genome.wustl.edu	36	7	111217830	111217830	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	7	111217830	111217830	C	T	SNP	DOCK4	NM_014705	human	genbank	54_36p	-1	reviewed	silent	c.3234	p.Q1078	1	NULL	superfamily_SH3-domain;superfamily_GTPase activation domain GAP;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);HMMPfam_SH3_2;superfamily_ARM repeat	-	no_errors
EPHA1	2041	genome.wustl.edu	36	7	142798707	142798707	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	7	142798707	142798707	G	A	SNP	EPHA1	NM_005232	human	genbank	54_36p	-1	reviewed	missense	c.2896	p.R966C	1	HMMPfam_SAM_1	Ephrin_lbd,HMMPfam_Ephrin_lbd,Pkinase_Tyr,HMMPfam_Pkinase_Tyr,SAM_1,HMMPfam_SAM_1,fn3,HMMPfam_fn3	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151491100	151491100	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	7	151491100	151491100	G	C	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	missense	c.10495	p.Q3499E	0.02	NULL	AT_hook;HMMPfam_AT_hook;HMG_box;HMMPfam_HMG_box;SET;HMMPfam_SET;PHD;HMMPfam_PHD;FYRN;HMMPfam_FYRN;FYRC;HMMPfam_FYRC	-	no_errors
DPP6	1804	genome.wustl.edu	36	7	154010382	154010382	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	7	154010382	154010382	T	A	SNP	DPP6	ENST00000406326	human	ensembl	54_36p	1	known	nonsense	c.717	p.C239*	0	NULL	-	-	no_errors
NUPL2	11097	genome.wustl.edu	36	7	23206653	23206653	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	7	23206653	23206653	G	A	SNP	NUPL2	NM_007342	human	genbank	54_36p	1	validated	missense	c.1036	p.G346S	0.5	NULL	HMMPfam_zf-CCCH	-	no_errors
HOXA6	3203	genome.wustl.edu	36	7	27153876	27153876	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	7	27153876	27153876	C	T	SNP	HOXA6	NM_024014	human	genbank	54_36p	-1	reviewed	silent	c.18	p.V6	1	NULL	-	-	no_errors
ANGPT1	284	genome.wustl.edu	36	8	108403533	108403533	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	8	108403533	108403533	C	T	SNP	ANGPT1	NM_001146	human	genbank	54_36p	-1	reviewed	splice_site	c.576-1	e4-1	1	-	-	-	no_errors
SLC30A8	169026	genome.wustl.edu	36	8	118253979	118253979	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	8	118253979	118253979	G	C	SNP	SLC30A8	NM_173851	human	genbank	54_36p	1	validated	missense	c.988	p.V330L	0.073	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	2802658	2802658	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	8	2802658	2802658	A	T	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.9785	p.F3262Y	0.99	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TPD52	7163	genome.wustl.edu	36	8	81139280	81139282	+	In_Frame_Del	DEL	TCT	TCT	-	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	TCT	TCT	TCT	-	TCT	TCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	8	81139280	81139282	TCT	-	DEL	TPD52	NM_001025252	human	genbank	54_36p	-1	validated	in_frame_del	c.243_241	p.R81in_frame_del	0.863:0.862:0.851	NULL	-	(deletion:cds_exon[81139268;81139383])	no_errors
ALG2	85365	genome.wustl.edu	36	9	101020710	101020710	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	9	101020710	101020710	T	G	SNP	ALG2	NM_033087	human	genbank	54_36p	-1	reviewed	missense	c.578	p.H193P	0.99	NULL	HMMPfam_Glycos_transf_1;superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
C9orf84	158401	genome.wustl.edu	36	9	113529997	113529997	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	9	113529997	113529997	G	A	SNP	C9orf84	NM_173521	human	genbank	54_36p	-1	validated	missense	c.1379	p.A460V		NULL	-	-	no_errors
FKBP15	23307	genome.wustl.edu	36	9	115009362	115009362	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	9	115009362	115009362	T	C	SNP	FKBP15	NM_015258	human	genbank	54_36p	-1	validated	missense	c.205	p.M69V		NULL	-	-	no_errors
ASS1	445	genome.wustl.edu	36	9	132366225	132366225	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	9	132366225	132366225	A	C	SNP	ASS1	NM_000050	human	genbank	54_36p	1	reviewed	missense	c.1235	p.K412T	1	NULL	HMMPfam_Arginosuc_synth;superfamily_Adenine nucleotide alpha hydrolases-like;superfamily_Argininosuccinate synthetase C-terminal domain	-	no_errors
TTF1	7270	genome.wustl.edu	36	9	134267311	134267311	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	9	134267311	134267311	G	C	SNP	TTF1	NM_007344	human	genbank	54_36p	-1	validated	missense	c.719	p.S240W		NULL	superfamily_Homeodomain-like;HMMPfam_Myb_DNA-binding	-	no_errors
MCART1	92014	genome.wustl.edu	36	9	37877988	37877988	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	9	37877988	37877988	T	A	SNP	MCART1	NM_033412	human	genbank	54_36p	-1	validated	missense	c.560	p.N187I	1	NULL	-	-	no_errors
FRMPD3	84443	genome.wustl.edu	36	X	106727668	106727668	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	106727668	106727668	C	G	SNP	FRMPD3	XM_042978	human	genbank	54_36p	1	model	missense	c.2002	p.R668G	1	NULL	-	-	no_errors
COL4A6	1288	genome.wustl.edu	36	X	107291514	107291514	+	Nonsense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	107291514	107291514	C	A	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	nonsense	c.4327	p.G1443*	1	HMMPfam_Collagen	HMMPfam_C4;HMMPfam_Collagen;superfamily_C-type lectin-like	-	no_errors
CAPN6	827	genome.wustl.edu	36	X	110382275	110382275	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	110382275	110382275	A	T	SNP	CAPN6	NM_014289	human	genbank	54_36p	-1	reviewed	silent	c.615	p.T205	0.68	HMMPfam_Peptidase_C2	HMMPfam_C2;HMMPfam_Peptidase_C2;HMMPfam_Calpain_III;superfamily_Calpain large subunit middle domain (domain III);superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_Cysteine proteinases	-	no_errors
GABRA3	2556	genome.wustl.edu	36	X	151087577	151087577	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	151087577	151087577	C	T	SNP	GABRA3	NM_000808	human	genbank	54_36p	-1	reviewed	missense	c.1258	p.A420T	1	HMMPfam_Neur_chan_memb	HMMPfam_Neur_chan_memb;HMMPfam_Neur_chan_LBD;superfamily_Nicotinic receptor ligand binding domain-like;superfamily_Neurotransmitter-gated ion-channel transmembrane pore	-	no_errors
F8	2157	genome.wustl.edu	36	X	153743231	153743231	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	153743231	153743231	C	G	SNP	F8	NM_000132	human	genbank	54_36p	-1	reviewed	missense	c.6679	p.A2227P	1	NULL	-	-	no_errors
GRPR	2925	genome.wustl.edu	36	X	16078640	16078640	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	16078640	16078640	A	G	SNP	GRPR	NM_005314	human	genbank	54_36p	1	reviewed	silent	c.705	p.K235	0.38	HMMPfam_7tm_1	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
DMD	1756	genome.wustl.edu	36	X	32292683	32292683	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	32292683	32292683	C	G	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	missense	c.5091	p.Q1697H	0.6	HMMPfam_Spectrin	HMMPfam_ZZ;HMMPfam_WW;superfamily_WW domain;HMMPfam_CH;HMMPfam_Spectrin;superfamily_Prefoldin;superfamily_t-snare proteins;HMMPfam_efhand_1;HMMPfam_efhand_2;superfamily_Spectrin repeat;superfamily_EF-hand;superfamily_Calponin-homology domain CH-domain	-	no_errors
ZNF182	7569	genome.wustl.edu	36	X	47721099	47721099	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	47721099	47721099	T	C	SNP	ZNF182	NM_006962	human	genbank	54_36p	-1	validated	missense	c.1331	p.N444S	0.01	HMMPfam_zf-C2H2	HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers;HMMPfam_KRAB	-	no_errors
PAGE2	203569	genome.wustl.edu	36	X	55133768	55133768	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	55133768	55133768	G	T	SNP	PAGE2	NM_207339	human	genbank	54_36p	1	provisional	missense	c.193	p.G65W		NULL	-	-	no_errors
HEPH	9843	genome.wustl.edu	36	X	65334323	65334323	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	65334323	65334323	C	T	SNP	HEPH	NM_014799	human	genbank	54_36p	1	reviewed	silent	c.774	p.A258	0.9	NULL	-	-	no_errors
DACH2	117154	genome.wustl.edu	36	X	85957759	85957759	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	85957759	85957759	G	T	SNP	DACH2	NM_053281	human	genbank	54_36p	1	reviewed	splice_site	c.1750+1	e11+1	1	-	-	-	no_errors
SHROOM2	357	genome.wustl.edu	36	X	9860271	9860271	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	04e814c6-ea28-4ade-bc8f-a618552943da	a85e2881-3685-486b-8c14-2b540dd5b1ee	X	9860271	9860271	G	C	SNP	SHROOM2	NM_001649	human	genbank	54_36p	1	reviewed	missense	c.2948	p.S983T		NULL	HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_ASD2;HMMPfam_ASD1	-	no_errors