Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID RAP1GAP 5909 broad.mit.edu 36 1 21816446 21816446 + Silent SNP G G T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G T T G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 IQCC 55721 broad.mit.edu 36 1 32445218 32445218 + Silent SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 GLB1L2 89944 broad.mit.edu 36 11 133717917 133717917 + Missense_Mutation SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 STAB2 55576 broad.mit.edu 36 12 102642987 102642987 + Silent SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 SRRM4 84530 broad.mit.edu 36 12 118052871 118052871 + Missense_Mutation SNP G G A novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 MUDENG 55745 broad.mit.edu 36 14 56822720 56822720 + Silent SNP A A G novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 DYNC1H1 1778 broad.mit.edu 36 14 101562692 101562692 + Nonsense_Mutation SNP T T A novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 ACAN 176 broad.mit.edu 36 15 87218208 87218208 + Missense_Mutation SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 WDR90 197335 broad.mit.edu 36 16 645066 645066 + Missense_Mutation SNP G G A novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 WIPF2 147179 broad.mit.edu 36 17 35670312 35670312 + Splice_Site SNP G G A novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 OR7C1 26664 broad.mit.edu 36 19 14771869 14771869 + Missense_Mutation SNP A A G novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 FAM123C 205147 broad.mit.edu 36 2 131237037 131237037 + Missense_Mutation SNP A A T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 C20orf197 284756 broad.mit.edu 36 20 58079162 58079162 + Missense_Mutation SNP T T C novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 WBP2NL 164684 broad.mit.edu 36 22 40724784 40724784 + Missense_Mutation SNP A A T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 SEMA3G 56920 broad.mit.edu 36 3 52450445 52450445 + Missense_Mutation SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 ST3GAL6 10402 broad.mit.edu 36 3 99993426 99993426 + Missense_Mutation SNP A A G novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 A A G G A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 MED10 84246 broad.mit.edu 36 5 6425624 6425624 + Missense_Mutation SNP G G A novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 MAST4 375449 broad.mit.edu 36 5 66386056 66386056 + Missense_Mutation SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 KCNN2 3781 broad.mit.edu 36 5 113768427 113768427 + Missense_Mutation SNP G G A novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 FOXC1 2296 broad.mit.edu 36 6 1556120 1556120 + Silent SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 MAS1L 116511 broad.mit.edu 36 6 29562786 29562786 + Missense_Mutation SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 DNAH8 1769 broad.mit.edu 36 6 38949054 38949054 + Missense_Mutation SNP T T C novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 PAPOLB 56903 broad.mit.edu 36 7 4867818 4867818 + Silent SNP G G A novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 PRKAR2B 5577 broad.mit.edu 36 7 106574068 106574068 + Missense_Mutation SNP G G A novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 ING3 54556 broad.mit.edu 36 7 120396395 120396395 + Missense_Mutation SNP G G C novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 FLNC 2318 broad.mit.edu 36 7 128272219 128272219 + Missense_Mutation SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 ZFHX4 79776 broad.mit.edu 36 8 77928837 77928837 + Silent SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 DCAF4L2 138009 broad.mit.edu 36 8 88954868 88954868 + Missense_Mutation SNP C C G novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 CBWD1 55871 broad.mit.edu 36 9 168930 168930 + Missense_Mutation SNP G G C novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 ADAMTSL1 92949 broad.mit.edu 36 9 18564169 18564169 + Missense_Mutation SNP G G A novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 SLC44A1 23446 broad.mit.edu 36 9 107150529 107150529 + Missense_Mutation SNP G G T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 PLP1 5354 broad.mit.edu 36 X 102928267 102928267 + Missense_Mutation SNP C C T novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 TP53 7157 broad.mit.edu 36 17 7518254 7518254 + Missense_Mutation SNP A A C novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 A A C C A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269 ITPKB 3707 broad.mit.edu 36 1 224989954 224989956 + In_Frame_Del DEL GAG - GAG novel none TCGA-13-1504-01A-01W-0545-08 TCGA-13-1504-10A-01W-0546-08 GAG GAG - - GAG GAG Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 15c62cbb-78de-42a2-acd8-46599cd61986 4a43a38c-892c-4478-b94f-318dbe282269