Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAM2 2515 hgsc.bcm.edu 36 8 39732459 39732459 + Missense_Mutation SNP T T G novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 T T T G T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 LAMA2 3908 hgsc.bcm.edu 36 6 129705303 129705303 + Silent SNP C C T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 PDCL2 132954 hgsc.bcm.edu 36 4 56123405 56123405 + Missense_Mutation SNP A A C novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 SNX12 29934 hgsc.bcm.edu 36 X 70199435 70199435 + Silent SNP A A G novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 SON 6651 hgsc.bcm.edu 36 21 33870566 33870566 + Frame_Shift_Del DEL G G - novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 ZNF642 339559 hgsc.bcm.edu 36 1 40717713 40717713 + Frame_Shift_Del DEL G G - novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 ARSF 416 hgsc.bcm.edu 36 X 3012505 3012505 + Missense_Mutation SNP G G A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 C7orf10 79783 hgsc.bcm.edu 36 7 40455461 40455461 + Missense_Mutation SNP G G T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 CA9 768 hgsc.bcm.edu 36 9 35669874 35669874 + Silent SNP G G A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 CENPE 1062 hgsc.bcm.edu 36 4 104285137 104285137 + Silent SNP A A G novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 A A A G A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 CTDSP1 58190 hgsc.bcm.edu 36 2 218974574 218974574 + Silent SNP C C T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 FGFR1 2260 hgsc.bcm.edu 36 8 38394953 38394953 + Silent SNP G G A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 GJA5 2702 hgsc.bcm.edu 36 1 145697869 145697869 + Missense_Mutation SNP C C T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 INPP5F 22876 hgsc.bcm.edu 36 10 121576919 121576919 + Silent SNP G G A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 KCNK10 54207 hgsc.bcm.edu 36 14 87763626 87763626 + Missense_Mutation SNP C C G novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 MAS1L 116511 hgsc.bcm.edu 36 6 29563511 29563511 + Missense_Mutation SNP C C T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 MNAT1 4331 hgsc.bcm.edu 36 14 60355243 60355243 + Silent SNP A A G novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 A A A G A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 OR5B17 219965 hgsc.bcm.edu 36 11 57882755 57882755 + Missense_Mutation SNP C C T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 PRPF6 24148 hgsc.bcm.edu 36 20 62112060 62112060 + Missense_Mutation SNP A A T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 A A A T A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 SLC2A14 144195 hgsc.bcm.edu 36 12 7861875 7861875 + Missense_Mutation SNP A A C novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 A A A C A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 SREBF2 6721 hgsc.bcm.edu 36 22 40599771 40599771 + Silent SNP C C G novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 TDRD7 23424 hgsc.bcm.edu 36 9 99230677 99230677 + Missense_Mutation SNP G G C novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G C G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 TMEM132D 121256 hgsc.bcm.edu 36 12 128124941 128124941 + Missense_Mutation SNP T T A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 T T T A T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 TNR 7143 hgsc.bcm.edu 36 1 173639206 173639206 + Silent SNP G G A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 XRN1 54464 hgsc.bcm.edu 36 3 143623024 143623024 + Missense_Mutation SNP A A T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 A A A T A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 MLL2 8085 hgsc.bcm.edu 36 12 47711527 47711527 + Missense_Mutation SNP C C A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 TP53 7157 hgsc.bcm.edu 36 17 7517821 7517821 + Missense_Mutation SNP T T C novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 ATRNL1 26033 hgsc.bcm.edu 36 10 117049749 117049749 + Splice_Site SNP T T A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 T T T A T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 CDK5RAP1 51654 hgsc.bcm.edu 36 20 31448341 31448341 + Missense_Mutation SNP G G T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 COL6A3 1293 hgsc.bcm.edu 36 2 237968338 237968338 + Nonsense_Mutation SNP C C A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 CTNND2 1501 hgsc.bcm.edu 36 5 11026590 11026590 + Missense_Mutation SNP G G A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 EIF2AK3 9451 hgsc.bcm.edu 36 2 88638527 88638527 + Nonsense_Mutation SNP G G A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 EPHB4 2050 hgsc.bcm.edu 36 7 100248358 100248358 + Missense_Mutation SNP C C T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 FBXL20 84961 hgsc.bcm.edu 36 17 34678605 34678605 + Splice_Site SNP C C T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 FNDC3B 64778 hgsc.bcm.edu 36 3 173448059 173448059 + Missense_Mutation SNP C C T novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 ITGB7 3695 hgsc.bcm.edu 36 12 51871969 51871969 + Missense_Mutation SNP A A G novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 A A A G A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 KCNJ1 3758 hgsc.bcm.edu 36 11 128215201 128215201 + Frame_Shift_Del DEL A A - novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 A A A - A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 MMP1 4312 hgsc.bcm.edu 36 11 102168642 102168642 + Missense_Mutation SNP C C G novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 NUPL1 9818 hgsc.bcm.edu 36 13 24808372 24808372 + Missense_Mutation SNP C C A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 RBM10 8241 hgsc.bcm.edu 36 X 46913777 46913777 + Missense_Mutation SNP G G A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 TTC33 23548 hgsc.bcm.edu 36 5 40752165 40752165 + Nonsense_Mutation SNP C C A novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5 VPS13A 23230 hgsc.bcm.edu 36 9 79119353 79119353 + Missense_Mutation SNP C C G novel TCGA-23-1023-01A-03W-0484-10 TCGA-23-1023-10A-01W-0484-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 1da8c6bd-59a5-4a23-b2ed-7a4577bfd0ca a774e1af-ce60-43a8-9426-3c8012423ef5