Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error MT-ND2 0 genome.wustl.edu 36 MT 4559 4559 + Nonsense_Mutation SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d MT 4559 4559 G A SNP MT-ND2 ENST00000361453 human ensembl 54_36p +1 known nonsense c.89 p.W30* NULL HMMPfam_Oxidored_q1 HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C - no_stop_codon:bad_bp_length_for_coding_region MT-ND4 4538 genome.wustl.edu 36 MT 11629 11629 + Missense_Mutation SNP C T T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d MT 11629 11629 C T SNP MT-ND4 ENST00000361381 human ensembl 54_36p +1 known missense c.869 p.S290L NULL HMMPfam_Oxidored_q1 HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1 - no_stop_codon:bad_bp_length_for_coding_region TMEM184A 202915 genome.wustl.edu 36 7 1557090 1557090 + Missense_Mutation SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 7 1557090 1557090 G A SNP TMEM184A NM_001097620 human genbank 54_36p -1 validated missense c.274 p.R92C 1.000 HMMPfam_DUF300 HMMPfam_DUF300 - no_errors KREMEN2 79412 genome.wustl.edu 36 16 2955035 2955035 + Missense_Mutation SNP G G T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 16 2955035 2955035 G T SNP KREMEN2 NM_172229 human genbank 54_36p +1 reviewed missense c.269 p.R90L 1.000 superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1 superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,HMMSmart_SM00321,HMMPfam_WSC,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042 - no_errors COPS7A 50813 genome.wustl.edu 36 12 6708712 6708712 + Silent SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 12 6708712 6708712 G A SNP COPS7A NM_016319 human genbank 54_36p +1 provisional silent c.366 p.L122 1.000 HMMPfam_PCI,HMMSmart_SM00088 HMMPfam_PCI,HMMSmart_SM00088 - no_errors RREB1 6239 genome.wustl.edu 36 6 7175839 7175839 + Silent SNP G G C novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 6 7175839 7175839 G C SNP RREB1 NM_001003699 human genbank 54_36p +1 validated silent c.2508 p.A836 0.000 NULL HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667 - no_errors TP53 7157 genome.wustl.edu 36 17 7518263 7518263 + Missense_Mutation SNP C T T rs11540652 unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 17 7518263 7518263 C T SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.743 p.R248Q 1.000 HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53 HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain - no_errors KLRC1 3821 genome.wustl.edu 36 12 10494426 10494426 + Missense_Mutation SNP C C G novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 12 10494426 10494426 C G SNP KLRC1 NM_002259 human genbank 54_36p -1 reviewed missense c.207 p.E69D 0.713 NULL superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C - no_errors HERC2P2 400322 genome.wustl.edu 36 15 18903897 18903897 + Missense_Mutation SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 15 18903897 18903897 G A SNP HERC2P2 ENST00000324413 human ensembl 54_36p -1 known missense c.2887 p.R963W 1.000 NULL HMMPfam_MIB_HERC2 - no_errors TEP1 7011 genome.wustl.edu 36 14 19914117 19914117 + Missense_Mutation SNP C C T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 14 19914117 19914117 C T SNP TEP1 NM_007110 human genbank 54_36p -1 reviewed missense c.6235 p.G2079R 0.913 superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40 HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40 - no_errors LOC100131046 0 genome.wustl.edu 36 16 20074841 20074841 + RNA SNP T T C novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 16 20074841 20074841 T C SNP LOC100131046 XR_037711 human genbank 54_36p +1 model rna NULL NULL 0.355 - - - pseudogene OXSM 54995 genome.wustl.edu 36 3 25810763 25810763 + Missense_Mutation SNP A A G novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 3 25810763 25810763 A G SNP OXSM NM_017897 human genbank 54_36p +1 reviewed missense c.1154 p.H385R 1.000 superfamily_Thiolase-like,HMMPfam_Ketoacyl-synt_C superfamily_Thiolase-like,HMMPfam_ketoacyl-synt,PatternScan_B_KETOACYL_SYNTHASE,HMMPfam_Ketoacyl-synt_C - no_errors CLIC6 54102 genome.wustl.edu 36 21 35002891 35002891 + Missense_Mutation SNP A A G novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 21 35002891 35002891 A G SNP CLIC6 NM_053277 human genbank 54_36p +1 reviewed missense c.1634 p.H545R 0.998 superfamily_Glutathione S-transferase (GST) C-terminal domain superfamily_Thioredoxin-like,superfamily_Glutathione S-transferase (GST) C-terminal domain - no_errors ABCD2 225 genome.wustl.edu 36 12 38280728 38280728 + Missense_Mutation SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 12 38280728 38280728 G A SNP ABCD2 NM_005164 human genbank 54_36p -1 reviewed missense c.1558 p.L520F 1.000 superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran HMMPfam_ABC_membrane_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1 - no_errors GFAP 2670 genome.wustl.edu 36 17 40348004 40348004 + Missense_Mutation SNP C C T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 17 40348004 40348004 C T SNP GFAP NM_002055 human genbank 54_36p -1 reviewed missense c.377 p.R126Q 0.697 HMMPfam_Filament HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF - no_errors SUMO3 6612 genome.wustl.edu 36 21 45058388 45058388 + Silent SNP G G T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 21 45058388 45058388 G T SNP SUMO3 NM_006936 human genbank 54_36p -1 validated silent c.81 p.S27 0.558 superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin - no_errors PANX2 56666 genome.wustl.edu 36 22 48959604 48959604 + Missense_Mutation SNP C C T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 22 48959604 48959604 C T SNP PANX2 NM_052839 human genbank 54_36p +1 reviewed missense c.1775 p.P592L 0.000 NULL NULL - no_errors APEH 327 genome.wustl.edu 36 3 49688598 49688598 + Missense_Mutation SNP A A T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 3 49688598 49688598 A T SNP APEH NM_001640 human genbank 54_36p +1 reviewed missense c.548 p.D183V 0.787 superfamily_Peptidase_S9A_N superfamily_Peptidase_S9A_N,superfamily_SSF53474,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER - no_errors PARP8 79668 genome.wustl.edu 36 5 50109715 50109715 + Missense_Mutation SNP C C G novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 5 50109715 50109715 C G SNP PARP8 NM_024615 human genbank 54_36p +1 provisional missense c.574 p.L192V 1.000 NULL superfamily_ADP-ribosylation,HMMPfam_PARP - no_errors HNRNPA1L2 144983 genome.wustl.edu 36 13 52115391 52115391 + Nonsense_Mutation SNP G G T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 13 52115391 52115391 G T SNP HNRNPA1L2 NM_001011724 human genbank 54_36p +1 validated nonsense c.763 p.G255* 0.013 NULL superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1 - no_errors GSTA4 2941 genome.wustl.edu 36 6 52951294 52951294 + Missense_Mutation SNP C C A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 6 52951294 52951294 C A SNP GSTA4 NM_001512 human genbank 54_36p -1 reviewed missense c.602 p.G201V 1.000 superfamily_Glutathione S-transferase (GST) C-terminal domain superfamily_Thioredoxin-like,HMMPfam_GST_N,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C - no_errors CTCFL 140690 genome.wustl.edu 36 20 55517247 55517247 + Missense_Mutation SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 20 55517247 55517247 G A SNP CTCFL NM_080618 human genbank 54_36p -1 reviewed missense c.1495 p.R499C 1.000 superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1 - no_errors ZNF468 90333 genome.wustl.edu 36 19 58036289 58036289 + Missense_Mutation SNP C C G novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 19 58036289 58036289 C G SNP ZNF468 NM_001008801 human genbank 54_36p -1 validated missense c.1070 p.C357S 0.536 superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2 - no_errors GUSB 2990 genome.wustl.edu 36 7 65084592 65084592 + Missense_Mutation SNP G G C novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 7 65084592 65084592 G C SNP GUSB NM_000181 human genbank 54_36p -1 validated missense c.14 p.S5W 0.000 NULL superfamily_Galactose-binding domain-like,HMMPfam_Glyco_hydro_2_N,HMMPfam_Glyco_hydro_2,superfamily_beta-Galactosidase/glucuronidase domain,HMMPfam_Glyco_hydro_2_C,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F2_1,PatternScan_GLYCOSYL_HYDROL_F2_2 - no_errors LBXCOR1 390598 genome.wustl.edu 36 15 65905580 65905580 + Silent SNP C C T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 15 65905580 65905580 C T SNP LBXCOR1 NM_001031807 human genbank 54_36p +1 provisional silent c.333 p.R111 0.998 HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind,superfamily_SAND_like,HMMPfam_c-SKI_SMAD_bind - no_errors SLC12A4 6560 genome.wustl.edu 36 16 66543709 66543709 + Missense_Mutation SNP C C T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 16 66543709 66543709 C T SNP SLC12A4 NM_005072 human genbank 54_36p -1 validated missense c.796 p.V266M 1.000 HMMPfam_AA_permease HMMPfam_AA_permease,HMMPfam_KCl_Cotrans_1 - no_errors TAF1 6872 genome.wustl.edu 36 X 70525329 70525329 + Nonsense_Mutation SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d X 70525329 70525329 G A SNP TAF1 NM_004606 human genbank 54_36p +1 reviewed nonsense c.2646 p.W882* 1.000 NULL HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1 - no_errors TAF1 6872 genome.wustl.edu 36 X 70530736 70530736 + Missense_Mutation SNP A A C novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d X 70530736 70530736 A C SNP TAF1 NM_004606 human genbank 54_36p +1 reviewed missense c.3382 p.M1128L 1.000 NULL HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_TBP-binding,superfamily_TAF_II_230,PatternScan_BROMODOMAIN_1 - no_errors LOC643159 643159 genome.wustl.edu 36 17 71734456 71734456 + Silent SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 17 71734456 71734456 G A SNP LOC643159 XM_928637 human genbank 54_36p -1 model silent c.27 p.N9 0.992 NULL HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC - pseudogene UCP2 7351 genome.wustl.edu 36 11 73366768 73366768 + Missense_Mutation SNP G G T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 11 73366768 73366768 G T SNP UCP2 NM_003355 human genbank 54_36p -1 reviewed missense c.148 p.P50T 0.014 superfamily_Mitoch_carrier,HMMPfam_Mito_carr superfamily_Mitoch_carrier,HMMPfam_Mito_carr - no_errors LOC339843 339843 genome.wustl.edu 36 3 99861968 99861968 + RNA SNP T T C novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 3 99861968 99861968 T C SNP LOC339843 XR_016598 human genbank 54_36p +1 model rna NULL NULL 1.000 - - - pseudogene KLF10 7071 genome.wustl.edu 36 8 103733363 103733363 + Missense_Mutation SNP T T C novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 8 103733363 103733363 T C SNP KLF10 NM_005655 human genbank 54_36p -1 validated missense c.373 p.T125A 0.001 NULL superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 - no_errors CXorf57 55086 genome.wustl.edu 36 X 105742608 105742608 + Silent SNP C C T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d X 105742608 105742608 C T SNP CXorf57 NM_018015 human genbank 54_36p +1 validated silent c.642 p.S214 0.191 NULL superfamily_Nucleic acid-binding proteins - no_errors ST6GAL2 84620 genome.wustl.edu 36 2 106813046 106813046 + Missense_Mutation SNP A A G novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 2 106813046 106813046 A G SNP ST6GAL2 NM_032528 human genbank 54_36p -1 validated missense c.1226 p.L409P 1.000 HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase - no_errors ANK2 287 genome.wustl.edu 36 4 114396468 114396468 + Silent SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 4 114396468 114396468 G A SNP ANK2 NM_001148 human genbank 54_36p +1 reviewed silent c.1119 p.A373 0.732 superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death - no_errors TES 26136 genome.wustl.edu 36 7 115676382 115676382 + Silent SNP A A G novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 7 115676382 115676382 A G SNP TES NM_015641 human genbank 54_36p +1 reviewed silent c.186 p.K62 1.000 NULL HMMPfam_PET,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain) - no_errors TRAM1L1 133022 genome.wustl.edu 36 4 118225093 118225093 + Missense_Mutation SNP G G C novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 4 118225093 118225093 G C SNP TRAM1L1 NM_152402 human genbank 54_36p -1 validated missense c.905 p.S302W 0.397 HMMSmart_TLC,HMMPfam_TRAM_LAG1_CLN8 HMMPfam_TRAM1,HMMSmart_TLC,HMMPfam_TRAM_LAG1_CLN8 - no_errors MMP17 4326 genome.wustl.edu 36 12 130894562 130894562 + Missense_Mutation SNP C C A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 12 130894562 130894562 C A SNP MMP17 NM_016155 human genbank 54_36p +1 reviewed missense c.951 p.D317E 0.981 NULL "HMMPfam_PG_binding_1,superfamily_PGBD-like,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120" - no_errors ENSG00000196979 0 genome.wustl.edu 36 9 131944089 131944089 + Silent SNP G A A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 9 131944089 131944089 G A SNP ENSG00000196979 ENST00000358748 human ensembl 54_36p -1 known silent c.114 p.P38 0.001 NULL NULL - no_errors ATR 545 genome.wustl.edu 36 3 143757638 143757638 + Missense_Mutation SNP C C G novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 3 143757638 143757638 C G SNP ATR NM_001184 human genbank 54_36p -1 reviewed missense c.2112 p.K704N 1.000 superfamily_ARM repeat superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_UME,HMMSmart_SM00802,superfamily_TPR-like,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC - no_errors NUDT17 200035 genome.wustl.edu 36 1 144300681 144300681 + Missense_Mutation SNP G G C novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 1 144300681 144300681 G C SNP NUDT17 NM_001012758 human genbank 54_36p -1 validated missense c.104 p.T35R 0.301 NULL PatternScan_NUDIX,superfamily_NUDIX_hydrolase,HMMPfam_NUDIX - no_errors SEMA6C 10500 genome.wustl.edu 36 1 149376821 149376821 + Missense_Mutation SNP C C T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 1 149376821 149376821 C T SNP SEMA6C NM_030913 human genbank 54_36p -1 reviewed missense c.746 p.R249Q 0.729 superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema,HMMPfam_PSI,superfamily_Plexin repeat - no_errors PNMA5 114824 genome.wustl.edu 36 X 151910290 151910290 + Missense_Mutation SNP G G T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d X 151910290 151910290 G T SNP PNMA5 NM_001103150 human genbank 54_36p -1 validated missense c.509 p.P170Q 0.029 NULL NULL - no_errors LOC284685 284685 genome.wustl.edu 36 1 164512510 164512510 + RNA SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 1 164512510 164512510 G A SNP LOC284685 XR_017685 human genbank 54_36p -1 model rna NULL NULL 1.000 - - - pseudogene ENSG00000214210 0 genome.wustl.edu 36 3 165202295 165202295 + Silent SNP C C T novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 3 165202295 165202295 C T SNP ENSG00000214210 ENST00000397815 human ensembl 54_36p -1 known silent c.366 p.E122 0.000 HMMPfam_Neugrin HMMPfam_Neugrin - no_start_codon FMO6P 388714 genome.wustl.edu 36 1 169396940 169396940 + Silent SNP G A A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 1 169396940 169396940 G A SNP FMO6P ENST00000236166 human ensembl 54_36p +1 known silent c.1401 p.E467 0.988 HMMPfam_FMO-like superfamily_SSF51905,HMMPfam_FMO-like - no_errors LOC402112 402112 genome.wustl.edu 36 2 174883300 174883300 + RNA SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 2 174883300 174883300 G A SNP LOC402112 XR_017084 human genbank 54_36p -1 model rna NULL NULL 0.622 - - - pseudogene MLF1IP 79682 genome.wustl.edu 36 4 185853493 185853493 + Silent SNP G G C novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 4 185853493 185853493 G C SNP MLF1IP NM_024629 human genbank 54_36p -1 validated silent c.1200 p.A400 0.256 NULL NULL - no_errors NGEF 25791 genome.wustl.edu 36 2 233500083 233500083 + Silent SNP G G A novel unknown TCGA-23-2643-01A-01D-1526-09 TCGA-23-2643-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91bb7ed6-82bd-4a6f-b10d-cbda2ef56ef9 27491c94-d3bf-4000-832b-63700f6a506d 2 233500083 233500083 G A SNP NGEF NM_019850 human genbank 54_36p -1 validated silent c.441 p.A147 0.907 NULL superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326 - no_errors