Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error TXNIP 10628 genome.wustl.edu 36 1 144151427 144151427 + Silent SNP T T A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 1 144151427 144151427 T A SNP TXNIP NM_006472 human genbank 54_36p 1 validated silent c.504 p.V168 1 NULL - - no_errors HORMAD1 84072 genome.wustl.edu 36 1 148945692 148945692 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 1 148945692 148945692 C G SNP HORMAD1 NM_032132 human genbank 54_36p -1 provisional missense c.765 p.R255S 0.94 NULL - - no_errors FLG 2312 genome.wustl.edu 36 1 150553539 150553539 + Silent SNP C C T novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 1 150553539 150553539 C T SNP FLG NM_002016 human genbank 54_36p -1 provisional silent c.447 p.G149 NULL - - no_errors RGS18 64407 genome.wustl.edu 36 1 190417080 190417080 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 1 190417080 190417080 G C SNP RGS18 NM_130782 human genbank 54_36p 1 reviewed missense c.319 p.E107Q 1 NULL - - no_errors MECR 51102 genome.wustl.edu 36 1 29401139 29401139 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 1 29401139 29401139 T A SNP MECR NM_016011 human genbank 54_36p -1 validated missense c.659 p.D220V 0.97 HMMPfam_ADH_zinc_N superfamily_GroES-like;HMMPfam_ADH_zinc_N;HMMPfam_ADH_N;superfamily_NAD(P)-binding Rossmann-fold domains - no_errors MYO3A 53904 genome.wustl.edu 36 10 26503059 26503059 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 10 26503059 26503059 C A SNP MYO3A NM_017433 human genbank 54_36p 1 reviewed missense c.3860 p.P1287H 0.13 NULL HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like);superfamily_P-loop containing nucleoside triphosphate hydrolases;IQ;HMMPfam_IQ;Pkinase;Myosin_head;HMMPfam_Myosin_head - no_errors PARG 8505 genome.wustl.edu 36 10 50739698 50739698 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 10 50739698 50739698 G A SNP PARG ENST00000402038 human ensembl 54_36p -1 known missense c.2147 p.T716I 0.75 NULL - - no_errors ANK3 288 genome.wustl.edu 36 10 61637909 61637909 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 10 61637909 61637909 T C SNP ANK3 NM_020987 human genbank 54_36p -1 reviewed missense c.1085 p.D362G 1 HMMPfam_Ank HMMPfam_Death;HMMPfam_ZU5;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_DEATH domain - no_errors DNA2 1763 genome.wustl.edu 36 10 69852350 69852350 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 10 69852350 69852350 T A SNP DNA2 NM_001080449 human genbank 54_36p -1 provisional missense c.2678 p.E893V 1 NULL - - no_errors OR8A1 390275 genome.wustl.edu 36 11 123945635 123945635 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 11 123945635 123945635 C T SNP OR8A1 NM_001005194 human genbank 54_36p 1 provisional missense c.461 p.S154F 0.08 NULL - - no_errors KIF18A 81930 genome.wustl.edu 36 11 28014590 28014590 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 11 28014590 28014590 T A SNP KIF18A NM_031217 human genbank 54_36p -1 validated missense c.2146 p.N716Y NULL - - no_errors FAM111A 63901 genome.wustl.edu 36 11 58676910 58676910 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 11 58676910 58676910 G C SNP FAM111A NM_022074 human genbank 54_36p 1 validated missense c.1193 p.S398T NULL superfamily_Trypsin-like serine proteases - no_errors PLAC1L 219990 genome.wustl.edu 36 11 59567597 59567597 + Silent SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 11 59567597 59567597 G A SNP PLAC1L NM_173801 human genbank 54_36p 1 provisional silent c.144 p.A48 0.52 NULL - - no_errors RIC8B 55188 genome.wustl.edu 36 12 105732884 105732884 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 12 105732884 105732884 T G SNP RIC8B NM_018157 human genbank 54_36p 1 validated missense c.413 p.L138R 1 NULL - - no_errors CACNA1C 775 genome.wustl.edu 36 12 2483928 2483928 + Silent SNP C C A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 12 2483928 2483928 C A SNP CACNA1C ENST00000399634 human ensembl 54_36p 1 known silent c.1179 p.S393 1 NULL - - no_errors NALCN 259232 genome.wustl.edu 36 13 100742594 100742594 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 13 100742594 100742594 G T SNP NALCN NM_052867 human genbank 54_36p -1 validated missense c.924 p.F308L 1 HMMPfam_Ion_trans HMMPfam_Ion_trans;superfamily_Voltage-gated potassium channels - no_errors LOC388076 388076 genome.wustl.edu 36 15 19941744 19941744 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 15 19941744 19941744 G A SNP LOC388076 XM_931016 human genbank 54_36p -1 model missense c.467 p.A156V 1 NULL - - pseudogene PARN 5073 genome.wustl.edu 36 16 14557046 14557046 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 16 14557046 14557046 C G SNP PARN NM_002582 human genbank 54_36p -1 reviewed missense c.1284 p.M428I 1 NULL - - no_errors N4BP1 9683 genome.wustl.edu 36 16 47152712 47152712 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 16 47152712 47152712 T C SNP N4BP1 NM_153029 human genbank 54_36p -1 validated missense c.1343 p.K448R 1 NULL - - no_errors KRT23 25984 genome.wustl.edu 36 17 36335148 36335148 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 17 36335148 36335148 C A SNP KRT23 NM_015515 human genbank 54_36p -1 reviewed nonsense c.1126 p.E376* 1 HMMPfam_Filament HMMPfam_Filament - no_errors TP53 7157 genome.wustl.edu 36 17 7518324 7518325 + Frame_Shift_Ins INS - - A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 - - - A - - Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 17 7518324 7518325 - A INS TP53 NM_000546 human genbank 54_36p -1 reviewed frame_shift_ins c.682_681 p.D227fs 0.998:0.801 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors CYP2B7P1 1556 genome.wustl.edu 36 19 46139063 46139063 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 19 46139063 46139063 T C SNP CYP2B7P1 ENST00000330446 human ensembl 54_36p 1 known missense c.668 p.F223S 0.29 NULL - - no_errors MED25 81857 genome.wustl.edu 36 19 55024874 55024874 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 19 55024874 55024874 T C SNP MED25 NM_030973 human genbank 54_36p 1 validated missense c.545 p.I182T 1 NULL superfamily_vWA-like - no_errors TMEM146 257062 genome.wustl.edu 36 19 5722046 5722046 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 19 5722046 5722046 G A SNP TMEM146 NM_152784 human genbank 54_36p 1 validated missense c.1726 p.V576I 0.39 NULL - - no_errors PEG3 5178 genome.wustl.edu 36 19 62017192 62017192 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 19 62017192 62017192 C A SNP PEG3 NM_006210 human genbank 54_36p -1 provisional missense c.4430 p.G1477V 0.8 NULL HMMPfam_SCAN;HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors CCDC141 285025 genome.wustl.edu 36 2 179428502 179428502 + Silent SNP C C T novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 2 179428502 179428502 C T SNP CCDC141 NM_173648 human genbank 54_36p -1 provisional silent c.1152 p.R384 1 NULL - - no_errors KCNS3 3790 genome.wustl.edu 36 2 17977146 17977146 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 2 17977146 17977146 G A SNP KCNS3 NM_002252 human genbank 54_36p 1 reviewed missense c.1390 p.D464N 0.32 NULL - - no_errors WDR5B 54554 genome.wustl.edu 36 3 123616506 123616506 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 3 123616506 123616506 T C SNP WDR5B NM_019069 human genbank 54_36p -1 reviewed missense c.560 p.Y187C 1 NULL - - no_errors DTX3L 151636 genome.wustl.edu 36 3 123770675 123770675 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 3 123770675 123770675 T A SNP DTX3L NM_138287 human genbank 54_36p 1 validated missense c.1049 p.I350N 0.98 NULL HMMPfam_zf-C3HC4;superfamily_RING/U-box - no_errors CLDN18 51208 genome.wustl.edu 36 3 139225207 139225207 + Silent SNP C C A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 3 139225207 139225207 C A SNP CLDN18 NM_001002026 human genbank 54_36p 1 validated silent c.238 p.R80 1 NULL - - no_errors TRAK1 22906 genome.wustl.edu 36 3 42210387 42210387 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 3 42210387 42210387 C G SNP TRAK1 NM_001042646 human genbank 54_36p 1 validated missense c.968 p.T323R 1 NULL - - no_errors KIT 3815 genome.wustl.edu 36 4 55297711 55297711 + Silent SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 4 55297711 55297711 G A SNP KIT NM_000222 human genbank 54_36p 1 reviewed silent c.2664 p.R888 0.96 HMMPfam_Pkinase_Tyr Pkinase_Tyr;HMMPfam_Pkinase_Tyr;Protein kinase-like (PK-like);superfamily_Protein kinase-like (PK-like);ig;HMMPfam_ig;Immunoglobulin;superfamily_Immunoglobulin - no_errors PCDHA3 56145 genome.wustl.edu 36 5 140162322 140162322 + Silent SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 5 140162322 140162322 G A SNP PCDHA3 NM_018906 human genbank 54_36p 1 reviewed silent c.1356 p.A452 0.85 NULL - - no_errors SH3PXD2B 285590 genome.wustl.edu 36 5 171710170 171710170 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 5 171710170 171710170 C A SNP SH3PXD2B NM_001017995 human genbank 54_36p -1 validated missense c.814 p.A272S 1 NULL - - no_errors BOD1 91272 genome.wustl.edu 36 5 172968958 172968958 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 5 172968958 172968958 C T SNP BOD1 NM_138369 human genbank 54_36p -1 provisional missense c.448 p.E150K 1 NULL - - no_errors TMEM174 134288 genome.wustl.edu 36 5 72504933 72504933 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 5 72504933 72504933 C A SNP TMEM174 NM_153217 human genbank 54_36p 1 validated missense c.107 p.A36E 1 NULL - - no_errors TRDN 10345 genome.wustl.edu 36 6 123911363 123911363 + Nonsense_Mutation SNP A A T novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 6 123911363 123911363 A T SNP TRDN NM_006073 human genbank 54_36p -1 validated nonsense c.326 p.L109* 1 NULL - - no_errors DUSP22 56940 genome.wustl.edu 36 6 293818 293818 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 6 293818 293818 C T SNP DUSP22 NM_020185 human genbank 54_36p 1 provisional missense c.485 p.A162V 0.95 NULL HMMPfam_DSPc;superfamily_(Phosphotyrosine protein) phosphatases II - no_errors COL19A1 1310 genome.wustl.edu 36 6 70790257 70790257 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 6 70790257 70790257 A T SNP COL19A1 NM_001858 human genbank 54_36p 1 reviewed missense c.1044 p.K348N 1 HMMPfam_Collagen HMMPfam_Collagen;superfamily_Concanavalin A-like lectins/glucanases - no_errors LOC493754 493754 genome.wustl.edu 36 7 65679380 65679380 + RNA SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 7 65679380 65679380 G A SNP LOC493754 NR_002933 human genbank 54_36p -1 provisional rna NULL NULL 0.01 - - - pseudogene MUSK 4593 genome.wustl.edu 36 9 112570003 112570003 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 9 112570003 112570003 G A SNP MUSK NM_005592 human genbank 54_36p 1 validated missense c.1003 p.V335I 1 HMMPfam_Fz HMMPfam_Fz;HMMPfam_Pkinase_Tyr;superfamily_Protein kinase-like (PK-like);HMMPfam_I-set;superfamily_Immunoglobulin;superfamily_Frizzled cysteine-rich domain - no_errors SETX 23064 genome.wustl.edu 36 9 134192410 134192410 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 9 134192410 134192410 C A SNP SETX NM_015046 human genbank 54_36p -1 reviewed missense c.4396 p.G1466C NULL superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors KLHL9 55958 genome.wustl.edu 36 9 21323117 21323117 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 9 21323117 21323117 G A SNP KLHL9 NM_018847 human genbank 54_36p -1 validated missense c.1742 p.P581L 1 HMMPfam_Kelch_1 HMMPfam_Kelch_1;superfamily_Galactose oxidase central domain;HMMPfam_BACK;HMMPfam_BTB;superfamily_POZ domain - no_errors CNTNAP3 79937 genome.wustl.edu 36 9 39076820 39076820 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 9 39076820 39076820 C G SNP CNTNAP3 NM_033655 human genbank 54_36p -1 reviewed missense c.3247 p.D1083H 0.88 HMMPfam_Laminin_G_2 HMMPfam_F5_F8_type_C;HMMPfam_EGF;superfamily_Galactose-binding domain-like;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_Fibrinogen C-terminal domain-like - no_errors GDA 9615 genome.wustl.edu 36 9 74049916 74049916 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 9 74049916 74049916 G A SNP GDA NM_004293 human genbank 54_36p 1 validated missense c.1168 p.E390K 1 HMMPfam_Amidohydro_1 HMMPfam_Amidohydro_1;superfamily_Composite domain of metallo-dependent hydrolases;superfamily_Metallo-dependent hydrolases - no_errors PTCHD1 139411 genome.wustl.edu 36 X 23321597 23321597 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 X 23321597 23321597 G A SNP PTCHD1 NM_173495 human genbank 54_36p 1 validated missense c.2041 p.V681I 1 NULL - - no_errors ARHGEF9 23229 genome.wustl.edu 36 X 62833818 62833818 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1418-01A-01W-0549-09 TCGA-24-1418-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 6093bcb5-4889-4cb9-9b01-e4e4278e72aa 99170dcd-ecd1-4735-8bea-5ef023669cf2 X 62833818 62833818 A T SNP ARHGEF9 NM_015185 human genbank 54_36p -1 validated missense c.473 p.F158Y 1 HMMPfam_RhoGEF HMMPfam_RhoGEF;HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_PH;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like - no_errors