Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
OVGP1	5016	genome.wustl.edu	36	1	111759162	111759162	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	1	111759162	111759162	G	A	SNP	OVGP1	NM_002557	human	genbank	54_36p	-1	reviewed	missense	c.1484	p.T495I		NULL	HMMPfam_Glyco_hydro_18;superfamily_(Trans)glycosidases;superfamily_Chitinase insertion domain	-	no_errors
NRAP	4892	genome.wustl.edu	36	10	115402747	115402747	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	10	115402747	115402747	G	T	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.507	p.S169R	1	NULL	HMMPfam_Nebulin;HMMPfam_LIM;superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
OR5R1	219479	genome.wustl.edu	36	11	55941420	55941420	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	11	55941420	55941420	T	A	SNP	OR5R1	NM_001004744	human	genbank	54_36p	-1	provisional	missense	c.865	p.I289F	0.91	NULL	-	-	no_errors
MS4A10	341116	genome.wustl.edu	36	11	60316331	60316331	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	11	60316331	60316331	C	A	SNP	MS4A10	NM_206893	human	genbank	54_36p	1	validated	silent	c.321	p.I107	0.15	NULL	-	-	no_errors
PRKRIR	5612	genome.wustl.edu	36	11	75739612	75739612	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	11	75739612	75739612	A	G	SNP	PRKRIR	NM_004705	human	genbank	54_36p	-1	provisional	missense	c.2230	p.Y744H	1	NULL	HMMPfam_THAP;HMMPfam_hATC	-	no_errors
CYB561	1534	genome.wustl.edu	36	17	58868567	58868567	+	Missense_Mutation	SNP	A	C	C	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	C	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	17	58868567	58868567	A	C	SNP	CYB561	NM_001017916	human	genbank	54_36p	-1	validated	missense	c.74	p.L25R	0.99	NULL	-	-	no_errors
GEMIN4	50628	genome.wustl.edu	36	17	595930	595930	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	17	595930	595930	C	G	SNP	GEMIN4	NM_015721	human	genbank	54_36p	-1	reviewed	missense	c.2103	p.L701F	0.97	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	17	7518990	7518990	A	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195N	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
ATIC	471	genome.wustl.edu	36	2	215911798	215911798	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	2	215911798	215911798	C	T	SNP	ATIC	NM_004044	human	genbank	54_36p	1	validated	missense	c.1150	p.L384F	1	HMMPfam_AICARFT_IMPCHas	HMMPfam_MGS;HMMPfam_AICARFT_IMPCHas;superfamily_Methylglyoxal synthase-like;superfamily_AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC	-	no_errors
CEP97	79598	genome.wustl.edu	36	3	102957073	102957073	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	3	102957073	102957073	C	G	SNP	CEP97	NM_024548	human	genbank	54_36p	1	provisional	missense	c.838	p.L280V	0.61	NULL	-	-	no_errors
ERC2	26059	genome.wustl.edu	36	3	56001130	56001130	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	3	56001130	56001130	C	G	SNP	ERC2	NM_015576	human	genbank	54_36p	-1	validated	silent	c.2250	p.L750	0.94	NULL	superfamily_Prefoldin	-	no_errors
STK10	6793	genome.wustl.edu	36	5	171516300	171516300	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	5	171516300	171516300	A	G	SNP	STK10	NM_005990	human	genbank	54_36p	-1	reviewed	missense	c.254	p.L85P	1	NULL	-	-	no_errors
CDH12	1010	genome.wustl.edu	36	5	22011192	22011192	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	5	22011192	22011192	G	A	SNP	CDH12	NM_004061	human	genbank	54_36p	-1	reviewed	silent	c.291	p.G97	0.99	HMMPfam_Cadherin	HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
EPHA7	2045	genome.wustl.edu	36	6	94177476	94177476	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	6	94177476	94177476	A	G	SNP	EPHA7	NM_004440	human	genbank	54_36p	-1	reviewed	missense	c.296	p.F99S	1	HMMPfam_Ephrin_lbd	Ephrin_lbd;HMMPfam_Ephrin_lbd;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;SAM_1;HMMPfam_SAM_1;fn3;HMMPfam_fn3	-	no_errors
MUC3B	57876	genome.wustl.edu	36	7	100390002	100390002	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	7	100390002	100390002	G	T	SNP	MUC3B	ENST00000332750	human	ensembl	54_36p	1	known	nonsense	c.1690	p.E564*	0.02	NULL	-	-	no_start_codon
SEMA4D	10507	genome.wustl.edu	36	9	91193779	91193779	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	52866517-eddf-4d63-a121-a296d6b2d264	a22faee3-dfd0-479d-81f5-c60b73449c0c	9	91193779	91193779	C	T	SNP	SEMA4D	NM_006378	human	genbank	54_36p	-1	validated	missense	c.778	p.D260N	1	NULL	-	-	no_errors