Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ALOX5AP 241 hgsc.bcm.edu 36 13 30216290 30216290 + Missense_Mutation SNP C C T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 CD99L2 83692 hgsc.bcm.edu 36 X 149689474 149689474 + Missense_Mutation SNP C C T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 KIAA1467 57613 hgsc.bcm.edu 36 12 13112649 13112649 + Splice_Site SNP G G C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 MOSPD2 158747 hgsc.bcm.edu 36 X 14839425 14839425 + Missense_Mutation SNP C C A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 PPFIA1 8500 hgsc.bcm.edu 36 11 69898704 69898704 + Missense_Mutation SNP C C T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 PTGFRN 5738 hgsc.bcm.edu 36 1 117311463 117311463 + Missense_Mutation SNP T T C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 PUM2 23369 hgsc.bcm.edu 36 2 20357651 20357651 + Silent SNP T T C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 SLC9A4 389015 hgsc.bcm.edu 36 2 102509162 102509162 + Missense_Mutation SNP A A C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 SLFN13 146857 hgsc.bcm.edu 36 17 30793372 30793373 + Frame_Shift_Ins INS - - T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 - - . . . . Unknown Untested Somatic Phase_III WXS none SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 SLFN13 146857 hgsc.bcm.edu 36 17 30793377 30793377 + Nonsense_Mutation SNP T T A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 ABHD5 51099 hgsc.bcm.edu 36 3 43718856 43718856 + Silent SNP G G A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 AOX1 316 hgsc.bcm.edu 36 2 201242694 201242694 + Missense_Mutation SNP A A T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 CBLC 23624 hgsc.bcm.edu 36 19 49989347 49989347 + Missense_Mutation SNP C C T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 CCL15 6359 hgsc.bcm.edu 36 17 31349505 31349505 + Missense_Mutation SNP T T C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 CPA5 93979 hgsc.bcm.edu 36 7 129789577 129789577 + Silent SNP G A A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G A A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 DDX46 9879 hgsc.bcm.edu 36 5 134127670 134127670 + Missense_Mutation SNP G G T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 EHHADH 1962 hgsc.bcm.edu 36 3 186404907 186404907 + Missense_Mutation SNP C C G novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 ELOVL3 83401 hgsc.bcm.edu 36 10 103978216 103978216 + Missense_Mutation SNP G G A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 ERCC6L 54821 hgsc.bcm.edu 36 X 71342127 71342127 + Missense_Mutation SNP C C G novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 FSHR 2492 hgsc.bcm.edu 36 2 49234922 49234922 + Missense_Mutation SNP T T A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 GNL3L 54552 hgsc.bcm.edu 36 X 54601673 54601673 + Missense_Mutation SNP C C G novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 IL10RA 3587 hgsc.bcm.edu 36 11 117375476 117375476 + Silent SNP C C A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 IPO9 55705 hgsc.bcm.edu 36 1 200107005 200107005 + Missense_Mutation SNP G G A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 LEPR 3953 hgsc.bcm.edu 36 1 65875250 65875250 + Missense_Mutation SNP G G C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 MAN1B1 11253 hgsc.bcm.edu 36 9 139122816 139122816 + Silent SNP C C T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 NCR3 259197 hgsc.bcm.edu 36 6 31665620 31665620 + Missense_Mutation SNP G G C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 RAB3B 5865 hgsc.bcm.edu 36 1 52215215 52215215 + Missense_Mutation SNP C C G novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 RBBP6 5930 hgsc.bcm.edu 36 16 24489826 24489826 + Missense_Mutation SNP T T C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 TMEM62 80021 hgsc.bcm.edu 36 15 41226042 41226042 + Missense_Mutation SNP G G A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 AGTR2 186 hgsc.bcm.edu 36 X 115218610 115218610 + Missense_Mutation SNP G G A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 BACH2 60468 hgsc.bcm.edu 36 6 90698874 90698874 + Nonsense_Mutation SNP C C A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 BOD1L 259282 hgsc.bcm.edu 36 4 13210996 13210996 + Missense_Mutation SNP C C T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 C12orf10 60314 hgsc.bcm.edu 36 12 51986779 51986779 + Missense_Mutation SNP T T A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 C5orf42 65250 hgsc.bcm.edu 36 5 37156188 37156188 + Missense_Mutation SNP T T C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 C9orf72 203228 hgsc.bcm.edu 36 9 27546634 27546634 + Missense_Mutation SNP A A G novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 CHKA 1119 hgsc.bcm.edu 36 11 67594313 67594313 + Missense_Mutation SNP A A G novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 CLN8 2055 hgsc.bcm.edu 36 8 1707013 1707013 + Missense_Mutation SNP G G A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 HACE1 57531 hgsc.bcm.edu 36 6 105284880 105284880 + Missense_Mutation SNP G G A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 HAO1 54363 hgsc.bcm.edu 36 20 7814210 7814210 + Missense_Mutation SNP C C T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 HAUS4 54930 hgsc.bcm.edu 36 14 22486947 22486947 + Silent SNP C C A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 KLF11 8462 hgsc.bcm.edu 36 2 10105902 10105902 + Silent SNP C C T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 MARK1 4139 hgsc.bcm.edu 36 1 218875350 218875350 + Missense_Mutation SNP G G A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 MSN 4478 hgsc.bcm.edu 36 X 64866095 64866095 + Missense_Mutation SNP A A C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 A A A C A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 NAP1L3 4675 hgsc.bcm.edu 36 X 92814217 92814217 + Missense_Mutation SNP A A T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 PHF19 26147 hgsc.bcm.edu 36 9 122663242 122663242 + Missense_Mutation SNP T T C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 SMARCA2 6595 hgsc.bcm.edu 36 9 2029514 2029514 + Missense_Mutation SNP C C A novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 SMC3 9126 hgsc.bcm.edu 36 10 112333647 112333647 + Missense_Mutation SNP A A T novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273 TP53 7157 hgsc.bcm.edu 36 17 7519281 7519281 + Splice_Site SNP T T C novel TCGA-24-1557-01A-01W-0615-10 TCGA-24-1557-10A-01W-0615-10 T T C C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID f81ad476-ba03-404c-9b97-41603ea214c6 f3c3aecf-8fa6-4e0b-b31b-ccb258f65273