Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AGTPBP1 23287 hgsc.bcm.edu 36 9 87447594 87447594 + Missense_Mutation SNP G G T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 ASAP1 50807 hgsc.bcm.edu 36 8 131234209 131234209 + Missense_Mutation SNP C C A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 BRCA1 672 hgsc.bcm.edu 36 17 38497425 38497426 + Frame_Shift_Ins INS - - TAAGTTCT novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 - - . . . . Unknown Untested Somatic Phase_III WXS none SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 CXCL13 10563 hgsc.bcm.edu 36 4 78748015 78748015 + Splice_Site SNP T T G novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 GART 2618 hgsc.bcm.edu 36 21 33803992 33803992 + Frame_Shift_Del DEL T T - novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 HERC5 51191 hgsc.bcm.edu 36 4 89616064 89616064 + Missense_Mutation SNP C C T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 IRF2 3660 hgsc.bcm.edu 36 4 185576686 185576686 + Nonsense_Mutation SNP T T A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 MTTP 4547 hgsc.bcm.edu 36 4 100735064 100735064 + Splice_Site SNP G G T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 NVL 4931 hgsc.bcm.edu 36 1 222481965 222481965 + Missense_Mutation SNP A A G rs41271483 TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 PDK1 5163 hgsc.bcm.edu 36 2 173168901 173168901 + Silent SNP C C T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 SECISBP2 79048 hgsc.bcm.edu 36 9 91137694 91137694 + Missense_Mutation SNP G G A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 ADAMTS14 140766 hgsc.bcm.edu 36 10 72190319 72190319 + Missense_Mutation SNP G G T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 ASB3 51130 hgsc.bcm.edu 36 2 53810179 53810179 + Silent SNP G G A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 ENAM 10117 hgsc.bcm.edu 36 4 71728122 71728122 + Missense_Mutation SNP T T A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 FAT2 2196 hgsc.bcm.edu 36 5 150881655 150881655 + Silent SNP C C G novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 FUCA2 2519 hgsc.bcm.edu 36 6 143867019 143867019 + Missense_Mutation SNP C C T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 GBP6 163351 hgsc.bcm.edu 36 1 89618566 89618566 + Missense_Mutation SNP C C T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 HNF1B 6928 hgsc.bcm.edu 36 17 33167738 33167738 + Missense_Mutation SNP A G G novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 A A G G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 ITGA3 3675 hgsc.bcm.edu 36 17 45503245 45503245 + Missense_Mutation SNP T C C novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 T T C C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 KIAA0564 23078 hgsc.bcm.edu 36 13 41283438 41283438 + Silent SNP C C G novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 KIAA1128 54462 hgsc.bcm.edu 36 10 86249632 86249632 + Missense_Mutation SNP T T G novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 T T T G T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 KIF21B 23046 hgsc.bcm.edu 36 1 199222879 199222879 + Missense_Mutation SNP G G T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 MGAT5 4249 hgsc.bcm.edu 36 2 134728487 134728487 + Missense_Mutation SNP G G C novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 MPN2 339501 hgsc.bcm.edu 36 1 226071694 226071694 + Missense_Mutation SNP C C T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 NKAP 79576 hgsc.bcm.edu 36 X 118961281 118961281 + Missense_Mutation SNP G G A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 NUP188 23511 hgsc.bcm.edu 36 9 130785399 130785399 + Silent SNP G G A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 OGT 8473 hgsc.bcm.edu 36 X 70674534 70674534 + Missense_Mutation SNP C C T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 OR51I1 390063 hgsc.bcm.edu 36 11 5418528 5418528 + Missense_Mutation SNP G G A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 PAN2 9924 hgsc.bcm.edu 36 12 55005108 55005108 + Silent SNP A A C novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 A A A C A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 QARS 5859 hgsc.bcm.edu 36 3 49112485 49112485 + Missense_Mutation SNP C C T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 SLC18A1 6570 hgsc.bcm.edu 36 8 20076209 20076209 + Missense_Mutation SNP G G C novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 SLTM 79811 hgsc.bcm.edu 36 15 56976705 56976705 + Silent SNP A A G novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 SPTBN1 6711 hgsc.bcm.edu 36 2 54727846 54727846 + Silent SNP C C T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 SRPX2 27286 hgsc.bcm.edu 36 X 99812504 99812504 + Missense_Mutation SNP T T A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 TBL1X 6907 hgsc.bcm.edu 36 X 9633064 9633064 + Missense_Mutation SNP C C A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 TEX13B 56156 hgsc.bcm.edu 36 X 107111840 107111840 + Missense_Mutation SNP C C A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 TMEM130 222865 hgsc.bcm.edu 36 7 98290870 98290870 + Silent SNP G G T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 TRYX3 136541 hgsc.bcm.edu 36 7 141601463 141601463 + Missense_Mutation SNP T T A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 ABT1 29777 hgsc.bcm.edu 36 6 26706233 26706233 + Silent SNP C C G novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 FAM65A 79567 hgsc.bcm.edu 36 16 66134424 66134424 + Nonsense_Mutation SNP C C A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 GRIN3A 116443 hgsc.bcm.edu 36 9 103489243 103489243 + Missense_Mutation SNP C C T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 MAP3K7IP3 257397 hgsc.bcm.edu 36 X 30783148 30783148 + Missense_Mutation SNP C C T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 MDN1 23195 hgsc.bcm.edu 36 6 90414761 90414761 + Missense_Mutation SNP A A C novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 A A A C A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 MYH2 4620 hgsc.bcm.edu 36 17 10381372 10381372 + Missense_Mutation SNP G T T novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G T T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 SHROOM2 357 hgsc.bcm.edu 36 X 9801753 9801753 + Missense_Mutation SNP G G A novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 STYK1 55359 hgsc.bcm.edu 36 12 10675157 10675157 + Missense_Mutation SNP G G C novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49 TP53 7157 hgsc.bcm.edu 36 17 7518264 7518264 + Missense_Mutation SNP G C C novel TCGA-25-1632-01A-01W-0615-10 TCGA-25-1632-10A-01W-0615-10 G G C C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID efea115f-a74f-4b67-824e-4fde7394b536 45f03084-1cf8-40a8-b71c-d6613bc58e49