Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error MT-ND5 4540 genome.wustl.edu 36 MT 14012 14012 + Missense_Mutation SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 MT 14012 14012 G A SNP MT-ND5 ENST00000361567 human ensembl 54_36p +1 known missense c.1675 p.E559K NULL HMMPfam_NADH5_C HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C - no_errors EXOC3 11336 genome.wustl.edu 36 5 507059 507059 + Missense_Mutation SNP C C G novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 5 507059 507059 C G SNP EXOC3 NM_007277 human genbank 54_36p +1 reviewed missense c.939 p.N313K 0.412 HMMPfam_Sec6 HMMPfam_Sec6 - no_errors KCNV2 169522 genome.wustl.edu 36 9 2708278 2708278 + Missense_Mutation SNP G G C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 9 2708278 2708278 G C SNP KCNV2 NM_133497 human genbank 54_36p +1 reviewed missense c.539 p.R180P 1.000 superfamily_BTB/POZ_fold,HMMPfam_K_tetra superfamily_BTB/POZ_fold,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans - no_errors OLFML1 283298 genome.wustl.edu 36 11 7465962 7465962 + Missense_Mutation SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 11 7465962 7465962 C T SNP OLFML1 NM_198474 human genbank 54_36p +1 provisional missense c.158 p.T53M 0.993 NULL HMMPfam_OLF,HMMSmart_SM00284 - no_errors MYH3 4621 genome.wustl.edu 36 17 10482285 10482285 + Silent SNP T T G novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 17 10482285 10482285 T G SNP MYH3 NM_002470 human genbank 54_36p -1 reviewed silent c.3529 p.R1177 0.771 HMMPfam_Myosin_tail_1 HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1 - no_errors PRAMEF7 441871 genome.wustl.edu 36 1 12902727 12902727 + Silent SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 1 12902727 12902727 G A SNP PRAMEF7 NM_001012277 human genbank 54_36p +1 provisional silent c.1332 p.R444 0.000 NULL superfamily_RNI-like - no_errors WIZ 58525 genome.wustl.edu 36 19 15420002 15420002 + Silent SNP C C A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 19 15420002 15420002 C A SNP WIZ NM_021241 human genbank 54_36p -1 validated silent c.117 p.G39 0.998 NULL HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors BASP1 10409 genome.wustl.edu 36 5 17328538 17328538 + Silent SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 5 17328538 17328538 C T SNP BASP1 NM_006317 human genbank 54_36p +1 reviewed silent c.213 p.G71 0.957 HMMPfam_BASP1 HMMPfam_BASP1 - no_errors ZNF626 199777 genome.wustl.edu 36 19 20600270 20600270 + Missense_Mutation SNP G G T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 19 20600270 20600270 G T SNP ZNF626 NM_001076675 human genbank 54_36p -1 validated missense c.253 p.L85I 0.001 NULL superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors EPHB2 2048 genome.wustl.edu 36 1 22983580 22983580 + Missense_Mutation SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 1 22983580 22983580 C T SNP EPHB2 NM_004442 human genbank 54_36p +1 reviewed missense c.235 p.R79W 1.000 superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_1 - no_errors GGT1 2678 genome.wustl.edu 36 22 23341040 23341040 + Missense_Mutation SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 22 23341040 23341040 G A SNP GGT1 NM_001032364 human genbank 54_36p +1 reviewed missense c.328 p.A110T 1.000 HMMPfam_G_glu_transpept HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE - no_errors ITSN2 50618 genome.wustl.edu 36 2 24286388 24286388 + Missense_Mutation SNP G G C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 2 24286388 24286388 G C SNP ITSN2 NM_006277 human genbank 54_36p -1 reviewed missense c.4273 p.L1425V 1.000 superfamily_PH domain-like superfamily_EF-hand,HMMSmart_SM00027,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,HMMPfam_SH3_2,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2 - no_errors EVI2A 2123 genome.wustl.edu 36 17 26669496 26669496 + Missense_Mutation SNP C C A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 17 26669496 26669496 C A SNP EVI2A NM_001003927 human genbank 54_36p -1 validated missense c.731 p.R244I 0.540 HMMPfam_EVI2A HMMPfam_EVI2A - no_errors HIST1H2BK 85236 genome.wustl.edu 36 6 27222203 27222203 + Silent SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 6 27222203 27222203 G A SNP HIST1H2BK NM_080593 human genbank 54_36p -1 reviewed silent c.354 p.A118 1.000 superfamily_Histone-fold,HMMSmart_SM00427 superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B - no_errors CCDC34 91057 genome.wustl.edu 36 11 27316945 27316945 + Nonstop_Mutation SNP T T A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 11 27316945 27316945 T A SNP CCDC34 NM_030771 human genbank 54_36p -1 validated nonstop c.1121 p.*374L 0.952 NULL NULL - no_errors LOC387646 387646 genome.wustl.edu 36 10 27578384 27578384 + RNA SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 10 27578384 27578384 G A SNP LOC387646 NR_003525 human genbank 54_36p -1 provisional rna NULL NULL 0.621 - - - pseudogene HIST1H4K 8362 genome.wustl.edu 36 6 27907037 27907037 + Missense_Mutation SNP G G T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 6 27907037 27907037 G T SNP HIST1H4K NM_003541 human genbank 54_36p -1 reviewed missense c.248 p.T83N 1.000 superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803 superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803 - no_errors OR2J2 26707 genome.wustl.edu 36 6 29250113 29250113 + Missense_Mutation SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 6 29250113 29250113 C T SNP OR2J2 NM_030905 human genbank 54_36p +1 validated missense c.722 p.T241I 0.964 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors DTNA 1837 genome.wustl.edu 36 18 30646008 30646008 + Missense_Mutation SNP C C G novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 18 30646008 30646008 C G SNP DTNA NM_001390 human genbank 54_36p +1 reviewed missense c.536 p.T179R 0.988 superfamily_EF-hand,HMMPfam_efhand_2 superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1 - no_errors CCL4 6351 genome.wustl.edu 36 17 31455455 31455455 + Missense_Mutation SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 17 31455455 31455455 C T SNP CCL4 NM_002984 human genbank 54_36p +1 validated missense c.44 p.A15V 0.950 NULL HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC - no_errors SLC39A7 7922 genome.wustl.edu 36 6 33279464 33279464 + Missense_Mutation SNP T T G novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 6 33279464 33279464 T G SNP SLC39A7 NM_001077516 human genbank 54_36p +1 validated missense c.1306 p.L436V 0.997 HMMPfam_Zip HMMPfam_Zip - no_errors LOC100128841 0 genome.wustl.edu 36 11 35945776 35945776 + RNA SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 11 35945776 35945776 G A SNP LOC100128841 XR_039189 human genbank 54_36p -1 model rna NULL NULL 0.002 - - - pseudogene TSHZ3 57616 genome.wustl.edu 36 19 36462040 36462040 + Missense_Mutation SNP A A C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 19 36462040 36462040 A C SNP TSHZ3 NM_020856 human genbank 54_36p -1 validated missense c.499 p.W167G 1.000 NULL PatternScan_HOMEOBOX_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox - no_errors KRT17 3872 genome.wustl.edu 36 17 37030804 37030804 + Silent SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 17 37030804 37030804 G A SNP KRT17 NM_000422 human genbank 54_36p -1 reviewed silent c.900 p.I300 1.000 HMMPfam_Filament,superfamily_Prefoldin HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF - no_errors CYBB 1536 genome.wustl.edu 36 X 37548108 37548108 + Missense_Mutation SNP A A G novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 X 37548108 37548108 A G SNP CYBB NM_000397 human genbank 54_36p +1 reviewed missense c.932 p.Q311R 1.000 superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8 HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_6 - no_errors RAB11FIP1 80223 genome.wustl.edu 36 8 37839604 37839604 + Silent SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 8 37839604 37839604 C T SNP RAB11FIP1 NM_001002814 human genbank 54_36p -1 validated silent c.3819 p.P1273 0.000 HMMPfam_RBD-FIP superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RBD-FIP - no_errors SCN5A 6331 genome.wustl.edu 36 3 38649645 38649645 + Missense_Mutation SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 3 38649645 38649645 C T SNP SCN5A NM_001099404 human genbank 54_36p -1 reviewed missense c.158 p.R53Q 1.000 NULL superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ - no_errors PLCD3 113026 genome.wustl.edu 36 17 40549546 40549546 + Silent SNP G G C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 17 40549546 40549546 G C SNP PLCD3 ENST00000322765 human ensembl 54_36p -1 known silent c.1392 p.P464 0.000 HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases superfamily_PH domain-like,HMMSmart_SM00233,superfamily_EF-hand,PatternScan_EF_HAND_1,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2 - no_errors PWP2 5822 genome.wustl.edu 36 21 44372568 44372568 + Missense_Mutation SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 21 44372568 44372568 C T SNP PWP2 NM_005049 human genbank 54_36p +1 validated missense c.2372 p.T791I 0.995 HMMPfam_PWP2 superfamily_Peptidase_S9A_N,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_PWP2 - no_errors KRTAP10-10 353333 genome.wustl.edu 36 21 44882010 44882010 + Missense_Mutation SNP A A C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 21 44882010 44882010 A C SNP KRTAP10-10 NM_181688 human genbank 54_36p +1 provisional missense c.248 p.D83A 0.020 HMMPfam_Keratin_B2 HMMPfam_Keratin_B2 - no_errors FCGBP 8857 genome.wustl.edu 36 19 45060383 45060383 + Missense_Mutation SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 19 45060383 45060383 C T SNP FCGBP NM_003890 human genbank 54_36p -1 validated missense c.12805 p.D4269N 0.001 NULL HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC - no_errors AKR1A1 10327 genome.wustl.edu 36 1 45808202 45808202 + Missense_Mutation SNP A A G novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 1 45808202 45808202 A G SNP AKR1A1 NM_006066 human genbank 54_36p +1 reviewed missense c.965 p.N322S 1.000 superfamily_NAD(P)-linked oxidoreductase superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3 - no_errors LOC387924 387924 genome.wustl.edu 36 13 48684414 48684414 + RNA SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 13 48684414 48684414 G A SNP LOC387924 XR_017443 human genbank 54_36p -1 model rna NULL NULL 0.015 - - - pseudogene KRT4 3851 genome.wustl.edu 36 12 51488866 51488866 + Silent SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 12 51488866 51488866 C T SNP KRT4 NM_002272 human genbank 54_36p -1 reviewed silent c.1092 p.T364 0.091 HMMPfam_Filament,superfamily_Prefoldin HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF - no_errors TANC2 26115 genome.wustl.edu 36 17 58836301 58836301 + Nonsense_Mutation SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 17 58836301 58836301 C T SNP TANC2 NM_025185 human genbank 54_36p +1 validated nonsense c.3196 p.R1066* 1.000 superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1 - no_errors NLRP4 147945 genome.wustl.edu 36 19 61062337 61062337 + Missense_Mutation SNP C C A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 19 61062337 61062337 C A SNP NLRP4 NM_134444 human genbank 54_36p +1 validated missense c.1766 p.S589Y 0.273 superfamily_RNI-like superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368 - no_errors ZNF547 284306 genome.wustl.edu 36 19 62581590 62581590 + Splice_Site SNP G G C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 19 62581590 62581590 G C SNP ZNF547 ENST00000391704 human ensembl 54_36p +1 known splice_site c.1033-1 e4-1 0.012 - - - no_errors CDH11 1009 genome.wustl.edu 36 16 63563349 63563349 + Missense_Mutation SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 16 63563349 63563349 G A SNP CDH11 NM_001797 human genbank 54_36p -1 reviewed missense c.1510 p.P504S 0.992 superfamily_Cadherin-like,HMMPfam_Cadherin superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C - no_errors ZNF138 7697 genome.wustl.edu 36 7 63929878 63929878 + Missense_Mutation SNP G G C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 7 63929878 63929878 G C SNP ZNF138 NM_006524 human genbank 54_36p +1 provisional missense c.652 p.E218Q 1.000 superfamily_SSF57667 superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors SPTB 6710 genome.wustl.edu 36 14 64330017 64330017 + Missense_Mutation SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 14 64330017 64330017 C T SNP SPTB NM_001024858 human genbank 54_36p -1 validated missense c.2117 p.R706H 0.003 HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH - no_errors LOC642236 642236 genome.wustl.edu 36 9 67945095 67945095 + RNA SNP A A G novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 9 67945095 67945095 A G SNP LOC642236 XR_041085 human genbank 54_36p -1 model rna NULL NULL 0.001 - - - no_errors TRPM3 80036 genome.wustl.edu 36 9 72925976 72925976 + Missense_Mutation SNP G G T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 9 72925976 72925976 G T SNP TRPM3 NM_001007471 human genbank 54_36p -1 reviewed missense c.115 p.L39I 1.000 NULL HMMPfam_Ion_trans - no_errors USP54 159195 genome.wustl.edu 36 10 74946730 74946730 + Missense_Mutation SNP T T C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 10 74946730 74946730 T C SNP USP54 NM_152586 human genbank 54_36p -1 provisional missense c.3460 p.S1154G 0.090 NULL superfamily_Cysteine proteinases,HMMPfam_UCH - no_errors HOMER1 9456 genome.wustl.edu 36 5 78788577 78788577 + Missense_Mutation SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 5 78788577 78788577 G A SNP HOMER1 NM_004272 human genbank 54_36p -1 validated missense c.26 p.T9I 1.000 HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like - no_errors LRRC8C 84230 genome.wustl.edu 36 1 89953048 89953048 + Silent SNP G G C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 1 89953048 89953048 G C SNP LRRC8C NM_032270 human genbank 54_36p +1 validated silent c.2331 p.L777 1.000 superfamily_L domain-like superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1 - no_errors MDN1 23195 genome.wustl.edu 36 6 90569826 90569826 + Missense_Mutation SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 6 90569826 90569826 G A SNP MDN1 NM_014611 human genbank 54_36p -1 provisional missense c.271 p.H91Y 1.000 NULL superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327 - no_errors UNC5C 8633 genome.wustl.edu 36 4 96382645 96382645 + Missense_Mutation SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 4 96382645 96382645 C T SNP UNC5C NM_003728 human genbank 54_36p -1 reviewed missense c.1066 p.V356I 0.590 superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209 superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death - no_errors GLRA4 0 genome.wustl.edu 36 X 102865801 102865801 + Missense_Mutation SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 X 102865801 102865801 G A SNP GLRA4 NM_001024452 human genbank 54_36p -1 validated missense c.232 p.L78F 1.000 superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb - no_errors AHNAK2 113146 genome.wustl.edu 36 14 104481753 104481753 + Missense_Mutation SNP C C A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 14 104481753 104481753 C A SNP AHNAK2 NM_138420 human genbank 54_36p -1 validated missense c.11080 p.D3694Y 0.020 NULL superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin - no_errors AHCYL1 10768 genome.wustl.edu 36 1 110364959 110364959 + Missense_Mutation SNP C C A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 1 110364959 110364959 C A SNP AHCYL1 NM_006621 human genbank 54_36p +1 validated missense c.1549 p.L517I 1.000 superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AdoHcyase superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AdoHcyase,PatternScan_ADOHCYASE_1,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_AdoHcyase_NAD,PatternScan_ADOHCYASE_2 - no_errors BUB1 699 genome.wustl.edu 36 2 111131595 111131595 + Splice_Site SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 2 111131595 111131595 C T SNP BUB1 NM_004336 human genbank 54_36p -1 reviewed splice_site c.1616+1 e14+1 1.000 - - - no_errors HTR2C 3358 genome.wustl.edu 36 X 114047479 114047479 + Missense_Mutation SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 X 114047479 114047479 G A SNP HTR2C NM_000868 human genbank 54_36p +1 reviewed missense c.622 p.V208M 1.000 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors MED13L 23389 genome.wustl.edu 36 12 114891130 114891130 + Silent SNP G G T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 12 114891130 114891130 G T SNP MED13L NM_015335 human genbank 54_36p -1 validated silent c.6223 p.R2075 1.000 NULL HMMPfam_TRAP_240kDa - no_errors TECTA 7007 genome.wustl.edu 36 11 120489546 120489546 + Silent SNP C C A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 11 120489546 120489546 C A SNP TECTA NM_005422 human genbank 54_36p +1 reviewed silent c.699 p.I233 0.998 HMMSmart_SM00539,HMMPfam_NIDO HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00215,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1,superfamily_EGF/Laminin - no_errors SAP130 79595 genome.wustl.edu 36 2 128473846 128473846 + Silent SNP G G A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 2 128473846 128473846 G A SNP SAP130 NM_024545 human genbank 54_36p -1 validated silent c.1230 p.T410 1.000 NULL NULL - no_errors POTEF 728378 genome.wustl.edu 36 2 130588999 130588999 + Nonsense_Mutation SNP G G C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 2 130588999 130588999 G C SNP POTEF NM_001099771 human genbank 54_36p -1 validated nonsense c.735 p.Y245* 0.972 superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2 - no_errors MCM6 4175 genome.wustl.edu 36 2 136344380 136344380 + Silent SNP C C G novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 2 136344380 136344380 C G SNP MCM6 NM_005915 human genbank 54_36p -1 reviewed silent c.276 p.R92 0.851 superfamily_Nucleic acid-binding proteins superfamily_Nucleic acid-binding proteins,HMMSmart_SM00350,HMMPfam_MCM,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_MCM_1 - no_errors PCDHA4 56144 genome.wustl.edu 36 5 140168321 140168321 + Silent SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 5 140168321 140168321 C T SNP PCDHA4 NM_018907 human genbank 54_36p +1 reviewed silent c.1365 p.F455 0.994 superfamily_Cadherin-like superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin - no_errors PCDHB4 56131 genome.wustl.edu 36 5 140483233 140483233 + Missense_Mutation SNP T T C novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 5 140483233 140483233 T C SNP PCDHB4 NM_018938 human genbank 54_36p +1 reviewed missense c.1469 p.L490P 0.978 superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA - no_errors NEB 4703 genome.wustl.edu 36 2 152135290 152135290 + Missense_Mutation SNP C C A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 2 152135290 152135290 C A SNP NEB NM_004543 human genbank 54_36p -1 reviewed missense c.11982 p.Q3994H 0.513 HMMSmart_SM00227,HMMPfam_Nebulin HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326 - no_errors WDR60 55112 genome.wustl.edu 36 7 158404322 158404322 + Splice_Site SNP G G T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 7 158404322 158404322 G T SNP WDR60 NM_018051 human genbank 54_36p +1 validated splice_site c.1921+1 e15+1 0.997 - - - no_errors MDS1 4197 genome.wustl.edu 36 3 170581689 170581689 + Missense_Mutation SNP C C A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 3 170581689 170581689 C A SNP MDS1 NM_004991 human genbank 54_36p -1 validated missense c.355 p.D119Y 1.000 NULL NULL - no_errors MPP4 58538 genome.wustl.edu 36 2 202248229 202248229 + Nonsense_Mutation SNP C C A novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 2 202248229 202248229 C A SNP MPP4 NM_033066 human genbank 54_36p -1 reviewed nonsense c.940 p.E314* 1.000 superfamily_SH3-domain HMMSmart_SM00569,HMMPfam_L27,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C - no_errors VIL1 7429 genome.wustl.edu 36 2 219001259 219001259 + Silent SNP C C T novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 2 219001259 219001259 C T SNP VIL1 NM_007127 human genbank 54_36p +1 reviewed silent c.522 p.I174 1.000 superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF82754,superfamily_VHP,HMMPfam_VHP,HMMSmart_VHP - no_errors NADK 65220 genome.wustl.edu 36 1 1674207 1674208 + In_Frame_Ins INS - - CCT novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 1 1674207 1674208 - CCT INS NADK NM_023018 human genbank 54_36p -1 validated in_frame_ins c.1337_1336 p.446in_frame_insE 0.003:0.004 NULL superfamily_NAD kinase (Pfam 01513),HMMPfam_NAD_kinase - no_errors TP53 7157 genome.wustl.edu 36 17 7517835 7517835 + Frame_Shift_Del DEL G G - novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 17 7517835 7517835 G - DEL TP53 NM_000546 human genbank 54_36p -1 reviewed frame_shift_del c.828 p.C277fs 0.999 HMMPfam_P53,superfamily_p53-like transcription factors HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain (deletion:cds_exon[7517744,7517880]) no_errors CTSA 5476 genome.wustl.edu 36 20 43953645 43953647 + In_Frame_Del DEL CTG CTG - novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 CTG CTG Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 20 43953645 43953647 CTG - DEL CTSA NM_000308 human genbank 54_36p +1 reviewed in_frame_del c.85_87 p.L32in_frame_del 0.066:0.073:0.080 NULL superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER,PatternScan_CARBOXYPEPT_SER_HIS (deletion:cds_exon[43953615,43953808]) no_errors C1orf87 127795 genome.wustl.edu 36 1 60278400 60278411 + In_Frame_Del DEL GCGTCTTCATTT GCGTCTTCATTT - novel unknown TCGA-29-1766-01A-01W-0633-09 TCGA-29-1766-10A-01W-0634-09 GCGTCTTCATTT GCGTCTTCATTT Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx da224cfe-35a1-4cf6-aaae-9bd877783fa9 0dfa0588-b616-4c29-93c7-0088e3e92876 1 60278400 60278411 GCGTCTTCATTT - DEL C1orf87 NM_152377 human genbank 54_36p -1 predicted in_frame_del c.524_513 p.NEDA172in_frame_del 0.046:0.014:0.015:0.126:0.139:0.153:0.155:0.124:0.051:0.038:0.038:0.035 NULL superfamily_EF-hand (deletion:cds_exon[60278177,60278440]) no_errors