Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-CO2	0	genome.wustl.edu	36	MT	8010	8010	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	MT	8010	8010	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	54_36p	+1	known	missense	c.424	p.V142M	NULL	superfamily_Cupredoxins,HMMPfam_COX2	HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region,superfamily_Cupredoxins,HMMPfam_COX2,PatternScan_COX2	-	no_errors
CSF2RA	1438	genome.wustl.edu	36	X	1369297	1369297	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	X	1369297	1369297	G	A	SNP	CSF2RA	NM_006140	human	genbank	54_36p	+1	reviewed	missense	c.541	p.D181N	0.006	superfamily_Fibronectin type III	superfamily_Fibronectin type III,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2	-	no_errors
ZNF343	79175	genome.wustl.edu	36	20	2412099	2412099	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	20	2412099	2412099	C	A	SNP	ZNF343	NM_024325	human	genbank	54_36p	-1	validated	missense	c.1508	p.S503I	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZBED1	9189	genome.wustl.edu	36	X	2417124	2417124	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	X	2417124	2417124	T	A	SNP	ZBED1	NM_004729	human	genbank	54_36p	-1	validated	missense	c.1637	p.N546I	1.000	NULL	HMMSmart_ZnF_BED,HMMPfam_zf-BED,HMMPfam_hATC	-	no_errors
OR52K3P	0	genome.wustl.edu	36	11	4453361	4453361	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	11	4453361	4453361	T	G	SNP	OR52K3P	ENST00000380435	human	ensembl	54_36p	+1	known	missense	c.136	p.L46V	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like	-	no_errors
NPHP4	261734	genome.wustl.edu	36	1	5944488	5944488	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	5944488	5944488	G	A	SNP	NPHP4	NM_015102	human	genbank	54_36p	-1	reviewed	missense	c.626	p.S209F	1.000	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519281	7519281	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	7519281	7519281	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.376-2	e4-2	1.000	-	-	-	no_errors
PER3	8863	genome.wustl.edu	36	1	7812613	7812613	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	7812613	7812613	A	G	SNP	PER3	NM_016831	human	genbank	54_36p	+1	reviewed	missense	c.2992	p.K998E	0.000	NULL	HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	-	no_errors
PER1	5187	genome.wustl.edu	36	17	7985897	7985897	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	7985897	7985897	A	G	SNP	PER1	NM_002616	human	genbank	54_36p	-1	reviewed	missense	c.3551	p.V1184A	1.000	NULL	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3	-	no_errors
OFCC1	266553	genome.wustl.edu	36	6	10016813	10016813	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	6	10016813	10016813	G	A	SNP	OFCC1	NM_153003	human	genbank	54_36p	-1	provisional	silent	c.267	p.Y89	1.000	NULL	NULL	-	no_errors
MYH4	4622	genome.wustl.edu	36	17	10297229	10297229	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	10297229	10297229	T	A	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	nonsense	c.3076	p.K1026*	1.000	NULL	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_Myosin_tail_1	-	no_errors
MYH1	4619	genome.wustl.edu	36	17	10339325	10339325	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	10339325	10339325	T	C	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.5204	p.E1735G	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
DGKB	1607	genome.wustl.edu	36	7	14707858	14707858	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	7	14707858	14707858	C	T	SNP	DGKB	NM_004080	human	genbank	54_36p	-1	reviewed	silent	c.489	p.T163	0.986	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors
BFSP1	631	genome.wustl.edu	36	20	17440702	17440702	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	20	17440702	17440702	T	G	SNP	BFSP1	NM_001195	human	genbank	54_36p	-1	reviewed	missense	c.546	p.E182D	0.999	NULL	superfamily_Prefoldin	-	no_errors
MRC1	4360	genome.wustl.edu	36	10	18152243	18152243	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	10	18152243	18152243	T	A	SNP	MRC1	NM_002438	human	genbank	54_36p	+1	validated	silent	c.255	p.A85	0.001	superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin	superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
LOC645313	645313	genome.wustl.edu	36	17	20629562	20629562	+	RNA	SNP	A	A	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	20629562	20629562	A	G	SNP	LOC645313	XR_017585	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
KRT18P40	390904	genome.wustl.edu	36	19	20936135	20936135	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	19	20936135	20936135	C	T	SNP	KRT18P40	XR_017288	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
XRN2	22803	genome.wustl.edu	36	20	21272813	21272813	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	20	21272813	21272813	G	A	SNP	XRN2	NM_012255	human	genbank	54_36p	+1	reviewed	missense	c.1496	p.S499N	1.000	NULL	HMMPfam_XRN_N	-	no_errors
FAM126A	84668	genome.wustl.edu	36	7	22984446	22984446	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	7	22984446	22984446	G	T	SNP	FAM126A	NM_032581	human	genbank	54_36p	-1	reviewed	nonsense	c.300	p.C100*	1.000	HMMPfam_Hyccin	HMMPfam_Hyccin	-	no_errors
ASAP3	55616	genome.wustl.edu	36	1	23632290	23632290	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	23632290	23632290	G	C	SNP	ASAP3	NM_017707	human	genbank	54_36p	-1	reviewed	missense	c.2190	p.N730K	1.000	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
NR1D2	9975	genome.wustl.edu	36	3	23978907	23978907	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	3	23978907	23978907	T	C	SNP	NR1D2	NM_005126	human	genbank	54_36p	+1	reviewed	missense	c.953	p.L318P	0.981	superfamily_Str_ncl_receptor	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors
ABHD12	26090	genome.wustl.edu	36	20	25268277	25268277	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	20	25268277	25268277	A	G	SNP	ABHD12	ENST00000376517	human	ensembl	54_36p	-1	known	missense	c.37	p.C13R	0.026	NULL	superfamily_SSF53474	-	no_stop_codon
BTN3A3	10384	genome.wustl.edu	36	6	26560457	26560457	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	6	26560457	26560457	C	G	SNP	BTN3A3	NM_006994	human	genbank	54_36p	+1	validated	missense	c.1594	p.L532V	0.013	NULL	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
HIST1H2AM	8336	genome.wustl.edu	36	6	27968646	27968646	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	6	27968646	27968646	G	T	SNP	HIST1H2AM	NM_003514	human	genbank	54_36p	-1	reviewed	silent	c.261	p.A87	1.000	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors
THOC5	8563	genome.wustl.edu	36	22	28257908	28257908	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	22	28257908	28257908	C	G	SNP	THOC5	NM_001002877	human	genbank	54_36p	-1	validated	missense	c.759	p.Q253H	0.994	HMMPfam_FimP	HMMPfam_FimP	-	no_errors
AZI2	64343	genome.wustl.edu	36	3	28343399	28343399	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	3	28343399	28343399	T	C	SNP	AZI2	NM_022461	human	genbank	54_36p	-1	validated	missense	c.694	p.N232D	1.000	NULL	NULL	-	no_errors
DEPDC5	9681	genome.wustl.edu	36	22	30623484	30623484	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	22	30623484	30623484	G	C	SNP	DEPDC5	NM_014662	human	genbank	54_36p	+1	validated	missense	c.4127	p.R1376P	1.000	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049"	-	no_errors
HSPA1L	3305	genome.wustl.edu	36	6	31887196	31887196	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	6	31887196	31887196	G	C	SNP	HSPA1L	NM_005527	human	genbank	54_36p	-1	reviewed	missense	c.533	p.P178R	1.000	superfamily_SSF53067,HMMPfam_HSP70	superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934	-	no_errors
EHMT2	10919	genome.wustl.edu	36	6	31972459	31972459	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	6	31972459	31972459	C	A	SNP	EHMT2	NM_006709	human	genbank	54_36p	-1	reviewed	missense	c.231	p.E77D	0.997	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SET domain,HMMSmart_SM00468,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SM00317	-	no_errors
NPSR1	387129	genome.wustl.edu	36	7	34664649	34664649	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	7	34664649	34664649	G	T	SNP	NPSR1	NM_207173	human	genbank	54_36p	+1	reviewed	nonsense	c.100	p.E34*	0.829	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC100132910	0	genome.wustl.edu	36	18	35169000	35169000	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	18	35169000	35169000	T	C	SNP	LOC100132910	XM_001720527	human	genbank	54_36p	+1	model	missense	c.194	p.F65S	0.995	NULL	NULL	-	no_errors
THRA	7067	genome.wustl.edu	36	17	35498269	35498269	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	35498269	35498269	A	G	SNP	THRA	NM_003250	human	genbank	54_36p	+1	reviewed	silent	c.972	p.L324	1.000	superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
ZNF536	9745	genome.wustl.edu	36	19	35626447	35626447	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	19	35626447	35626447	C	A	SNP	ZNF536	NM_014717	human	genbank	54_36p	+1	provisional	silent	c.138	p.A46	1.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TRIM44	54765	genome.wustl.edu	36	11	35641751	35641751	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	11	35641751	35641751	G	C	SNP	TRIM44	NM_017583	human	genbank	54_36p	+1	reviewed	missense	c.516	p.E172D	1.000	NULL	HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57845	-	no_errors
ENSG00000200113	0	genome.wustl.edu	36	7	37425877	37425877	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	7	37425877	37425877	T	C	SNP	ENSG00000200113	ENST00000363243	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.073	-	-	-	no_errors
GNL2	29889	genome.wustl.edu	36	1	37807469	37807469	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	37807469	37807469	C	T	SNP	GNL2	NM_013285	human	genbank	54_36p	-1	validated	missense	c.1438	p.E480K	0.872	NULL	HMMPfam_NGP1NT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1	-	no_errors
LSM12	124801	genome.wustl.edu	36	17	39496788	39496788	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	39496788	39496788	G	T	SNP	LSM12	NM_152344	human	genbank	54_36p	-1	validated	silent	c.165	p.I55	1.000	NULL	HMMPfam_AD	-	no_errors
ADAM11	4185	genome.wustl.edu	36	17	40204530	40204530	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	40204530	40204530	C	T	SNP	ADAM11	NM_002390	human	genbank	54_36p	+1	reviewed	missense	c.434	p.S145F	1.000	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_1"	-	no_errors
SREBF2	6721	genome.wustl.edu	36	22	40601315	40601315	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	22	40601315	40601315	C	G	SNP	SREBF2	NM_004599	human	genbank	54_36p	+1	reviewed	missense	c.1118	p.A373G	1.000	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
SETBP1	26040	genome.wustl.edu	36	18	40787291	40787291	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	18	40787291	40787291	T	A	SNP	SETBP1	NM_015559	human	genbank	54_36p	+1	validated	missense	c.3826	p.S1276T	0.905	NULL	HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
GTSF1L	149699	genome.wustl.edu	36	20	41788535	41788535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	20	41788535	41788535	C	T	SNP	GTSF1L	NM_176791	human	genbank	54_36p	-1	validated	missense	c.214	p.E72K	0.158	HMMPfam_UPF0224	HMMPfam_UPF0224	-	no_errors
HIVEP3	59269	genome.wustl.edu	36	1	41820959	41820959	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	41820959	41820959	C	A	SNP	HIVEP3	NM_024503	human	genbank	54_36p	-1	validated	missense	c.2097	p.M699I	1.000	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
USP49	25862	genome.wustl.edu	36	6	41874475	41874475	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	6	41874475	41874475	C	T	SNP	USP49	NM_018561	human	genbank	54_36p	-1	provisional	missense	c.1841	p.G614E	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_2	HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
CDC27	996	genome.wustl.edu	36	17	42561792	42561792	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	42561792	42561792	C	G	SNP	CDC27	NM_001256	human	genbank	54_36p	-1	reviewed	missense	c.2126	p.R709T	1.000	superfamily_SSF48452,HMMSmart_TPR	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	-	no_errors
RYR1	6261	genome.wustl.edu	36	19	43629235	43629235	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	19	43629235	43629235	C	A	SNP	RYR1	NM_000540	human	genbank	54_36p	+1	reviewed	missense	c.787	p.P263T	1.000	HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815)	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
MMP9	4318	genome.wustl.edu	36	20	44073250	44073250	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	20	44073250	44073250	G	A	SNP	MMP9	NM_004994	human	genbank	54_36p	+1	reviewed	silent	c.711	p.E237	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Peptidase_M10,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1"	"superfamily_PGBD-like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Peptidase_M10,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_PT,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN"	-	no_errors
TCTE1	202500	genome.wustl.edu	36	6	44363344	44363344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	6	44363344	44363344	G	A	SNP	TCTE1	NM_182539	human	genbank	54_36p	-1	provisional	missense	c.197	p.A66V	0.995	NULL	superfamily_SSF52047	-	no_errors
uc001jgd.1	0	genome.wustl.edu	36	10	48889506	48889506	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	10	48889506	48889506	G	T	SNP	uc001jgd.1	ENST00000339771	human	ensembl	54_36p	-1	known	missense	c.651	p.N217K	1.000	NULL	superfamily_SSF50729,HMMPfam_PH	-	no_start_codon:no_stop_codon
AP4E1	23431	genome.wustl.edu	36	15	48991585	48991585	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	15	48991585	48991585	C	T	SNP	AP4E1	NM_007347	human	genbank	54_36p	+1	validated	nonsense	c.169	p.Q57*	1.000	superfamily_ARM-type_fold,HMMPfam_Adaptin_N	superfamily_ARM-type_fold,HMMPfam_Adaptin_N,HMMPfam_Coatamer_beta_C	-	no_errors
GLDN	342035	genome.wustl.edu	36	15	49484226	49484226	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	15	49484226	49484226	A	G	SNP	GLDN	NM_181789	human	genbank	54_36p	+1	validated	missense	c.1639	p.T547A	0.001	NULL	HMMPfam_Collagen,HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
CHD9	80205	genome.wustl.edu	36	16	51747939	51747939	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	16	51747939	51747939	A	T	SNP	CHD9	NM_025134	human	genbank	54_36p	+1	validated	missense	c.437	p.H146L	1.000	NULL	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_BRK	-	no_errors
OLFM4	10562	genome.wustl.edu	36	13	52522718	52522718	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	13	52522718	52522718	C	A	SNP	OLFM4	NM_006418	human	genbank	54_36p	+1	reviewed	silent	c.1344	p.T448	0.979	HMMPfam_OLF,HMMSmart_OLF	HMMPfam_OLF,HMMSmart_OLF	-	no_errors
ERBB3	2065	genome.wustl.edu	36	12	54773593	54773593	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	12	54773593	54773593	G	C	SNP	ERBB3	NM_001982	human	genbank	54_36p	+1	reviewed	missense	c.1472	p.R491T	0.013	superfamily_L domain-like,HMMSmart_SM00261	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMSmart_SM00261,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	-	no_errors
FAM83B	222584	genome.wustl.edu	36	6	54913105	54913105	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	6	54913105	54913105	G	T	SNP	FAM83B	NM_001010872	human	genbank	54_36p	+1	validated	missense	c.1377	p.R459S	1.000	NULL	HMMPfam_DUF1669,superfamily_SSF56024	-	no_errors
AMFR	267	genome.wustl.edu	36	16	54993171	54993171	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	16	54993171	54993171	G	C	SNP	AMFR	NM_001144	human	genbank	54_36p	-1	reviewed	missense	c.1060	p.L354V	1.000	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_CUE,HMMSmart_SM00546	-	no_errors
DHCR24	1718	genome.wustl.edu	36	1	55092355	55092355	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	55092355	55092355	C	T	SNP	DHCR24	NM_014762	human	genbank	54_36p	-1	reviewed	missense	c.1161	p.M387I	1.000	NULL	superfamily_FAD-binding_2,HMMPfam_FAD_binding_4	-	no_errors
RP1	6101	genome.wustl.edu	36	8	55696210	55696210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	8	55696210	55696210	G	A	SNP	RP1	ENST00000220676	human	ensembl	54_36p	+1	known	missense	c.131	p.G44E	1.000	superfamily_SSF89837,HMMSmart_DCX	superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX	-	no_errors
SCN4A	6329	genome.wustl.edu	36	17	59374869	59374869	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	59374869	59374869	T	A	SNP	SCN4A	NM_000334	human	genbank	54_36p	-1	reviewed	missense	c.3986	p.K1329M	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ	-	no_errors
LOC643358	643358	genome.wustl.edu	36	16	59647143	59647143	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	16	59647143	59647143	G	A	SNP	LOC643358	XR_017145	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LILRA1	11024	genome.wustl.edu	36	19	59798228	59798228	+	Silent	SNP	A	A	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	19	59798228	59798228	A	T	SNP	LILRA1	NM_006863	human	genbank	54_36p	+1	provisional	silent	c.357	p.T119	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
ISCA1L	389293	genome.wustl.edu	36	5	62108612	62108612	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	5	62108612	62108612	G	A	SNP	ISCA1L	NM_001080540	human	genbank	54_36p	-1	provisional	nonsense	c.235	p.Q79*	1.000	superfamily_HesB_yadR_yfhF-like,HMMPfam_Fe-S_biosyn	superfamily_HesB_yadR_yfhF-like,HMMPfam_Fe-S_biosyn	-	no_errors
GANAB	23193	genome.wustl.edu	36	11	62153999	62153999	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	11	62153999	62153999	C	G	SNP	GANAB	NM_198335	human	genbank	54_36p	-1	validated	missense	c.1666	p.A556P	0.987	HMMPfam_Glyco_hydro_31	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2	-	no_errors
SNX1	6642	genome.wustl.edu	36	15	62210974	62210974	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	15	62210974	62210974	C	G	SNP	SNX1	NM_003099	human	genbank	54_36p	+1	reviewed	missense	c.1051	p.L351V	0.923	HMMPfam_Vps5	HMMPfam_Sorting_nexin,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMPfam_Vps5	-	no_errors
LCTL	197021	genome.wustl.edu	36	15	64643003	64643003	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	15	64643003	64643003	T	G	SNP	LCTL	NM_207338	human	genbank	54_36p	-1	validated	missense	c.385	p.K129Q	0.757	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_2,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
LOC642236	642236	genome.wustl.edu	36	9	67945115	67945115	+	RNA	SNP	C	A	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	9	67945115	67945115	C	A	SNP	LOC642236	XR_041085	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.003	-	-	-	no_errors
WBP2	23558	genome.wustl.edu	36	17	71357283	71357283	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	71357283	71357283	C	G	SNP	WBP2	NM_012478	human	genbank	54_36p	-1	reviewed	missense	c.301	p.G101R	1.000	HMMPfam_WWbp	HMMPfam_GRAM,HMMPfam_WWbp	-	no_errors
FOLR1	2348	genome.wustl.edu	36	11	71583984	71583984	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	11	71583984	71583984	G	A	SNP	FOLR1	NM_000802	human	genbank	54_36p	+1	reviewed	missense	c.190	p.A64T	0.566	HMMPfam_Folate_rec	HMMPfam_Folate_rec	-	no_errors
KIAA1274	27143	genome.wustl.edu	36	10	71977192	71977192	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	10	71977192	71977192	T	A	SNP	KIAA1274	NM_014431	human	genbank	54_36p	+1	validated	missense	c.2246	p.I749N	1.000	NULL	superfamily_SSF52799	-	no_errors
MOBKL1A	92597	genome.wustl.edu	36	4	72059814	72059814	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	4	72059814	72059814	T	C	SNP	MOBKL1A	NM_173468	human	genbank	54_36p	+1	reviewed	missense	c.356	p.M119T	1.000	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein	-	no_errors
DNAH17	8632	genome.wustl.edu	36	17	73958384	73958384	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	17	73958384	73958384	T	G	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.10859	p.H3620P	1.000	NULL	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors
ACADM	34	genome.wustl.edu	36	1	75971002	75971002	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	75971002	75971002	T	A	SNP	ACADM	NM_000016	human	genbank	54_36p	+1	reviewed	missense	c.204	p.D68E	0.975	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,PatternScan_ACYL_COA_DH_2	-	no_errors
C14orf148	122945	genome.wustl.edu	36	14	76930734	76930734	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	14	76930734	76930734	G	T	SNP	C14orf148	ENST00000380835	human	ensembl	54_36p	-1	known	missense	c.1073	p.S358Y	0.015	NULL	PatternScan_P5CR,superfamily_NAD(P)-bd,HMMPfam_F420_oxidored	-	no_errors
LOC653631	653631	genome.wustl.edu	36	1	78049154	78049154	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	78049154	78049154	G	A	SNP	LOC653631	XM_930476	human	genbank	54_36p	-1	model	nonsense	c.901	p.Q301*	1.000	HMMPfam_DUF1855	superfamily_Domain from hypothetical 2610208m17rik protein,HMMPfam_DUF1855	-	no_errors
POLR1A	25885	genome.wustl.edu	36	2	86108155	86108155	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	2	86108155	86108155	A	T	SNP	POLR1A	NM_015425	human	genbank	54_36p	-1	validated	missense	c.5065	p.S1689T	0.998	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb1_1,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5	-	no_errors
E2F5	1875	genome.wustl.edu	36	8	86311668	86311668	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	8	86311668	86311668	T	C	SNP	E2F5	NM_001951	human	genbank	54_36p	+1	reviewed	missense	c.908	p.I303T	1.000	NULL	superfamily_SSF46785,HMMPfam_E2F_TDP	-	no_errors
VGLL3	389136	genome.wustl.edu	36	3	87100499	87100499	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	3	87100499	87100499	C	G	SNP	VGLL3	NM_016206	human	genbank	54_36p	-1	validated	missense	c.868	p.A290P	1.000	NULL	HMMPfam_Vg_Tdu,HMMSmart_SM00711	-	no_errors
SPATA7	55812	genome.wustl.edu	36	14	87974333	87974333	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	14	87974333	87974333	G	C	SNP	SPATA7	NM_018418	human	genbank	54_36p	+1	validated	silent	c.1614	p.V538	0.111	NULL	NULL	-	no_errors
KLHL8	57563	genome.wustl.edu	36	4	88310789	88310789	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	4	88310789	88310789	C	A	SNP	KLHL8	NM_020803	human	genbank	54_36p	-1	validated	missense	c.1211	p.R404L	1.000	superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors
AKAP9	10142	genome.wustl.edu	36	7	91569903	91569903	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	7	91569903	91569903	G	C	SNP	AKAP9	NM_005751	human	genbank	54_36p	+1	reviewed	missense	c.11157	p.K3719N	1.000	HMMPfam_PACT_coil_coil	PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil	-	no_errors
MCTP2	55784	genome.wustl.edu	36	15	92728343	92728343	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	15	92728343	92728343	C	A	SNP	MCTP2	NM_018349	human	genbank	54_36p	+1	provisional	missense	c.1671	p.N557K	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
ATP5J2	9551	genome.wustl.edu	36	7	98894785	98894785	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	7	98894785	98894785	C	T	SNP	ATP5J2	NM_004889	human	genbank	54_36p	-1	reviewed	silent	c.177	p.K59	1.000	HMMPfam_WRW	HMMPfam_WRW	-	no_errors
NR1H4	9971	genome.wustl.edu	36	12	99421331	99421331	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	12	99421331	99421331	T	A	SNP	NR1H4	ENST00000188403	human	ensembl	54_36p	+1	known	missense	c.35	p.I12N	0.000	NULL	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
PCDH19	57526	genome.wustl.edu	36	X	99548556	99548556	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	X	99548556	99548556	G	A	SNP	PCDH19	NM_001105243	human	genbank	54_36p	-1	validated	missense	c.1696	p.P566S	1.000	superfamily_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
DCBLD2	131566	genome.wustl.edu	36	3	100023798	100023798	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	3	100023798	100023798	T	C	SNP	DCBLD2	NM_080927	human	genbank	54_36p	-1	validated	missense	c.794	p.Y265C	1.000	superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1	-	no_errors
IL1RAPL2	26280	genome.wustl.edu	36	X	104898059	104898059	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	X	104898059	104898059	C	T	SNP	IL1RAPL2	NM_017416	human	genbank	54_36p	+1	reviewed	missense	c.1810	p.P604S	0.965	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
NEURL	9148	genome.wustl.edu	36	10	105320859	105320859	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	10	105320859	105320859	A	T	SNP	NEURL	NM_004210	human	genbank	54_36p	+1	validated	missense	c.326	p.K109M	1.000	HMMSmart_SM00588,HMMPfam_Neuralized	HMMSmart_SM00588,HMMPfam_Neuralized,superfamily_RING/U-box	-	no_errors
LOC642732	642732	genome.wustl.edu	36	11	106203477	106203477	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	11	106203477	106203477	T	C	SNP	LOC642732	XR_016381	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.960	-	-	-	pseudogene
COL4A6	1288	genome.wustl.edu	36	X	107289498	107289498	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	X	107289498	107289498	G	A	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	silent	c.4665	p.P1555	0.898	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	-	no_errors
KCNV1	27012	genome.wustl.edu	36	8	111053672	111053672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	8	111053672	111053672	G	A	SNP	KCNV1	NM_014379	human	genbank	54_36p	-1	reviewed	missense	c.982	p.H328Y	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
DOCK4	9732	genome.wustl.edu	36	7	111274306	111274306	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	7	111274306	111274306	G	C	SNP	DOCK4	NM_014705	human	genbank	54_36p	-1	reviewed	missense	c.2586	p.I862M	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
PPP1R3A	5506	genome.wustl.edu	36	7	113307348	113307348	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	7	113307348	113307348	A	G	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	silent	c.1035	p.D345	0.768	NULL	HMMPfam_CBM_21	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113318684	113318684	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	8	113318684	113318684	G	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.10538	p.P3513H	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors
SUSD1	64420	genome.wustl.edu	36	9	113880646	113880646	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	9	113880646	113880646	C	G	SNP	SUSD1	NM_022486	human	genbank	54_36p	-1	validated	missense	c.1746	p.Q582H	0.999	NULL	superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
ANAPC5	51433	genome.wustl.edu	36	12	120257808	120257808	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	12	120257808	120257808	T	C	SNP	ANAPC5	NM_016237	human	genbank	54_36p	-1	reviewed	silent	c.861	p.E287	0.985	superfamily_TPR-like	superfamily_TPR-like,HMMSmart_SM00028	-	no_errors
COL14A1	7373	genome.wustl.edu	36	8	121329084	121329084	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	8	121329084	121329084	G	A	SNP	COL14A1	NM_021110	human	genbank	54_36p	+1	validated	missense	c.2531	p.R844Q	1.000	HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
PDIA5	10954	genome.wustl.edu	36	3	124312501	124312501	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	3	124312501	124312501	G	A	SNP	PDIA5	NM_006810	human	genbank	54_36p	+1	provisional	silent	c.501	p.K167	1.000	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1,PatternScan_ER_TARGET	-	no_errors
ACTRT1	139741	genome.wustl.edu	36	X	127012764	127012764	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	X	127012764	127012764	G	T	SNP	ACTRT1	NM_138289	human	genbank	54_36p	-1	provisional	missense	c.1103	p.T368K	0.927	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Actin,superfamily_SSF53067,HMMSmart_ACTIN	-	no_errors
YSK4	80122	genome.wustl.edu	36	2	135460835	135460835	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	2	135460835	135460835	A	T	SNP	YSK4	NM_025052	human	genbank	54_36p	-1	validated	missense	c.2077	p.S693T	0.377	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
PPP2R3A	5523	genome.wustl.edu	36	3	137307790	137307790	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	3	137307790	137307790	T	A	SNP	PPP2R3A	NM_002718	human	genbank	54_36p	+1	reviewed	missense	c.3265	p.F1089I	1.000	NULL	superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors
MCF2	4168	genome.wustl.edu	36	X	138526168	138526168	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	X	138526168	138526168	A	T	SNP	MCF2	NM_001099855	human	genbank	54_36p	-1	validated	missense	c.1310	p.I437K	0.831	NULL	HMMSmart_SEC14,superfamily_Spectrin,HMMSmart_SPEC,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
OR2F2	135948	genome.wustl.edu	36	7	143263493	143263493	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	7	143263493	143263493	C	T	SNP	OR2F2	NM_001004685	human	genbank	54_36p	+1	provisional	missense	c.235	p.P79S	0.880	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PRKAG2	51422	genome.wustl.edu	36	7	150900724	150900724	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	7	150900724	150900724	T	A	SNP	PRKAG2	NM_016203	human	genbank	54_36p	-1	reviewed	missense	c.1010	p.Q337L	1.000	HMMPfam_CBS	superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116	-	no_errors
ARHGEF11	9826	genome.wustl.edu	36	1	155176792	155176792	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	155176792	155176792	C	A	SNP	ARHGEF11	NM_198236	human	genbank	54_36p	-1	reviewed	missense	c.3564	p.E1188D	0.049	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,HMMSmart_RGS,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH	-	no_errors
ODZ2	57451	genome.wustl.edu	36	5	167606446	167606446	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	5	167606446	167606446	C	A	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	+1	known	missense	c.5921	p.S1974Y	1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_Ten_N,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Carboxypeptidase regulatory domain,superfamily_NHL repeat,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors
HAT1	8520	genome.wustl.edu	36	2	172530669	172530669	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	2	172530669	172530669	T	G	SNP	HAT1	NM_003642	human	genbank	54_36p	+1	reviewed	missense	c.605	p.F202C	1.000	superfamily_Acyl_CoA_acyltransferase	superfamily_Acyl_CoA_acyltransferase,HMMPfam_Hat1_N	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	174792848	174792848	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	174792848	174792848	C	G	SNP	PAPPA2	NM_020318	human	genbank	54_36p	+1	validated	missense	c.767	p.S256C	0.183	superfamily_Concanavalin A-like lectins/glucanases	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00004,HMMPfam_Notch,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M43,PatternScan_N6_MTASE,superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,superfamily_Notch domain"	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	174927994	174927994	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	174927994	174927994	C	T	SNP	PAPPA2	NM_020318	human	genbank	54_36p	+1	validated	silent	c.2541	p.P847	0.998	HMMPfam_Peptidase_M43	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain,PatternScan_N6_MTASE,PatternScan_ZINC_PROTEASE,HMMSmart_SM00560,HMMPfam_Peptidase_M43,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Complement control module/SCR domain,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
HTR3D	200909	genome.wustl.edu	36	3	185236976	185236976	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	3	185236976	185236976	C	A	SNP	HTR3D	NM_182537	human	genbank	54_36p	+1	reviewed	missense	c.95	p.S32Y	0.959	NULL	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
SORBS2	8470	genome.wustl.edu	36	4	186810812	186810812	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	4	186810812	186810812	G	A	SNP	SORBS2	NM_021069	human	genbank	54_36p	-1	reviewed	missense	c.332	p.P111L	0.999	HMMPfam_Sorb,HMMSmart_SM00459	HMMPfam_Sorb,HMMSmart_SM00459,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	208923619	208923619	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	208923619	208923619	G	T	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	missense	c.2597	p.T866K	0.997	NULL	superfamily_PYP-like sensor domain (PAS domain),HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
FN1	2335	genome.wustl.edu	36	2	215967656	215967656	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	2	215967656	215967656	A	G	SNP	FN1	NM_212482	human	genbank	54_36p	-1	reviewed	silent	c.3636	p.P1212	0.871	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058,PatternScan_EGF_1,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
OR2W5	441932	genome.wustl.edu	36	1	245721521	245721521	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1784-01A-02W-0633-09	TCGA-29-1784-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	214738d1-a084-4024-a0e5-7f4683233a06	47f4fbdc-08e4-445d-a5cd-be801f5fa9ee	1	245721521	245721521	T	C	SNP	OR2W5	NM_001004698	human	genbank	54_36p	+1	provisional	missense	c.469	p.F157L	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors