Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND4	4538	genome.wustl.edu	36	MT	11352	11352	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	MT	11352	11352	G	A	SNP	MT-ND4	ENST00000361381	human	ensembl	54_36p	+1	known	missense	c.592	p.A198T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region
MT-ND4	4538	genome.wustl.edu	36	MT	11497	11497	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	MT	11497	11497	T	C	SNP	MT-ND4	ENST00000361381	human	ensembl	54_36p	+1	known	missense	c.737	p.L246P	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region
C17orf97	0	genome.wustl.edu	36	17	264028	264028	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	17	264028	264028	G	A	SNP	C17orf97	NM_001013672	human	genbank	54_36p	+1	validated	missense	c.1078	p.E360K	0.000	NULL	NULL	-	no_errors
MIDN	90007	genome.wustl.edu	36	19	1208190	1208190	+	Silent	SNP	C	T	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	19	1208190	1208190	C	T	SNP	MIDN	NM_177401	human	genbank	54_36p	+1	validated	silent	c.1326	p.S442	0.922	NULL	superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin	-	no_errors
OR51B6	390058	genome.wustl.edu	36	11	5329908	5329908	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	11	5329908	5329908	G	A	SNP	OR51B6	NM_001004750	human	genbank	54_36p	+1	provisional	missense	c.595	p.V199I	0.017	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
LOC729449	729449	genome.wustl.edu	36	19	6544972	6544972	+	RNA	SNP	G	G	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	19	6544972	6544972	G	T	SNP	LOC729449	XR_038133	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
TP53	7157	genome.wustl.edu	36	17	7519203	7519203	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	17	7519203	7519203	G	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.452	p.P151R	0.998	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
CA6	765	genome.wustl.edu	36	1	8957020	8957020	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	8957020	8957020	G	A	SNP	CA6	ENST00000377436	human	ensembl	54_36p	+1	known	missense	c.872	p.R291K	0.141	NULL	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1	-	no_errors
TPTE	7179	genome.wustl.edu	36	21	9966591	9966591	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	21	9966591	9966591	C	A	SNP	TPTE	NM_199261	human	genbank	54_36p	-1	validated	missense	c.514	p.V172F	0.001	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
ELOVL2	54898	genome.wustl.edu	36	6	11098034	11098034	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	6	11098034	11098034	G	A	SNP	ELOVL2	NM_017770	human	genbank	54_36p	-1	validated	missense	c.653	p.T218M	0.522	HMMPfam_ELO	HMMPfam_ELO,PatternScan_ELO	-	no_errors
MAST1	22983	genome.wustl.edu	36	19	12819127	12819127	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	19	12819127	12819127	C	T	SNP	MAST1	NM_014975	human	genbank	54_36p	+1	provisional	silent	c.351	p.R117	1.000	HMMPfam_DUF1908	PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	-	no_errors
CECR8	27437	genome.wustl.edu	36	22	15689625	15689625	+	RNA	SNP	A	A	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	22	15689625	15689625	A	C	SNP	CECR8	NR_003607	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.133	-	-	-	pseudogene
IGSF21	84966	genome.wustl.edu	36	1	18564365	18564365	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	18564365	18564365	C	T	SNP	IGSF21	NM_032880	human	genbank	54_36p	+1	provisional	missense	c.602	p.A201V	0.578	superfamily_SSF48726	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	-	no_errors
TEP1	7011	genome.wustl.edu	36	14	19921237	19921237	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	14	19921237	19921237	C	T	SNP	TEP1	NM_007110	human	genbank	54_36p	-1	reviewed	missense	c.3983	p.R1328Q	0.975	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT	HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DOK2	9046	genome.wustl.edu	36	8	21823169	21823169	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	8	21823169	21823169	G	T	SNP	DOK2	NM_003974	human	genbank	54_36p	-1	reviewed	missense	c.838	p.P280T	0.025	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI	-	no_errors
C9orf72	203228	genome.wustl.edu	36	9	27538644	27538644	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	9	27538644	27538644	G	A	SNP	C9orf72	NM_018325	human	genbank	54_36p	-1	validated	silent	c.1170	p.G390	0.959	NULL	NULL	-	no_errors
C18orf34	374864	genome.wustl.edu	36	18	29079299	29079299	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	18	29079299	29079299	C	G	SNP	C18orf34	NM_001105528	human	genbank	54_36p	-1	validated	missense	c.1501	p.E501Q	0.001	NULL	NULL	-	no_errors
PDS5B	23047	genome.wustl.edu	36	13	32242523	32242523	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	13	32242523	32242523	C	G	SNP	PDS5B	NM_015032	human	genbank	54_36p	+1	validated	missense	c.3889	p.L1297V	0.950	NULL	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_AT_hook	-	no_errors
FHOD3	80206	genome.wustl.edu	36	18	32543149	32543149	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	18	32543149	32543149	C	A	SNP	FHOD3	NM_025135	human	genbank	54_36p	+1	validated	missense	c.1805	p.A602D	0.812	NULL	superfamily_ARM-type_fold,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors
DLGAP4	22839	genome.wustl.edu	36	20	34561468	34561468	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	20	34561468	34561468	G	A	SNP	DLGAP4	NM_183006	human	genbank	54_36p	+1	reviewed	missense	c.457	p.G153R	1.000	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
GJB4	127534	genome.wustl.edu	36	1	34999537	34999537	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	34999537	34999537	G	A	SNP	GJB4	NM_153212	human	genbank	54_36p	+1	validated	missense	c.95	p.R32H	0.998	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors
C6orf222	389384	genome.wustl.edu	36	6	36406037	36406037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	6	36406037	36406037	C	T	SNP	C6orf222	NM_001010903	human	genbank	54_36p	-1	predicted	missense	c.409	p.E137K	0.002	NULL	NULL	-	no_errors
PIK3C3	5289	genome.wustl.edu	36	18	37877719	37877719	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	18	37877719	37877719	A	G	SNP	PIK3C3	NM_002647	human	genbank	54_36p	+1	validated	missense	c.2128	p.S710G	1.000	superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
CATSPER2P1	440278	genome.wustl.edu	36	15	41824659	41824659	+	RNA	SNP	T	G	G	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	15	41824659	41824659	T	G	SNP	CATSPER2P1	NR_002318	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.990	-	-	-	pseudogene
GATM	2628	genome.wustl.edu	36	15	43445940	43445940	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	15	43445940	43445940	A	G	SNP	GATM	NM_001482	human	genbank	54_36p	-1	reviewed	missense	c.734	p.V245A	1.000	superfamily_Pentein,HMMPfam_Amidinotransf	PatternScan_TONB_DEPENDENT_REC_1,superfamily_Pentein,HMMPfam_Amidinotransf	-	no_errors
RYR1	6261	genome.wustl.edu	36	19	43672720	43672720	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	19	43672720	43672720	A	T	SNP	RYR1	NM_000540	human	genbank	54_36p	+1	reviewed	missense	c.5979	p.R1993S	0.874	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
TBRG4	9238	genome.wustl.edu	36	7	45107727	45107727	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	7	45107727	45107727	G	T	SNP	TBRG4	NM_004749	human	genbank	54_36p	-1	validated	missense	c.1579	p.L527M	1.000	HMMPfam_FAST_2	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors
CCR9	10803	genome.wustl.edu	36	3	45918019	45918019	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	3	45918019	45918019	G	T	SNP	CCR9	NM_031200	human	genbank	54_36p	+1	reviewed	missense	c.735	p.K245N	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SYT15	83849	genome.wustl.edu	36	10	46388671	46388671	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	10	46388671	46388671	G	A	SNP	SYT15	NM_031912	human	genbank	54_36p	-1	reviewed	silent	c.271	p.L91	0.005	NULL	PatternScan_CNMP_BINDING_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
ABCC11	85320	genome.wustl.edu	36	16	46821875	46821875	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	16	46821875	46821875	G	A	SNP	ABCC11	NM_032583	human	genbank	54_36p	-1	reviewed	silent	c.210	p.T70	0.926	NULL	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
LOC732229	732229	genome.wustl.edu	36	19	47681626	47681626	+	RNA	SNP	A	A	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	19	47681626	47681626	A	C	SNP	LOC732229	XR_038811	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ABCA13	154664	genome.wustl.edu	36	7	48286103	48286103	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	7	48286103	48286103	T	G	SNP	ABCA13	NM_152701	human	genbank	54_36p	+1	reviewed	missense	c.6131	p.L2044R	0.000	NULL	PatternScan_SERPIN	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NCKAP1L	3071	genome.wustl.edu	36	12	53179495	53179495	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	12	53179495	53179495	C	A	SNP	NCKAP1L	NM_005337	human	genbank	54_36p	+1	reviewed	missense	c.192	p.N64K	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
PLA2G4C	8605	genome.wustl.edu	36	19	53248115	53248115	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	19	53248115	53248115	C	T	SNP	PLA2G4C	NM_003706	human	genbank	54_36p	-1	provisional	missense	c.1531	p.V511I	0.004	superfamily_Acyl_Trfase/lysoPlipase	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase,HMMPfam_PLA2_B	-	no_errors
C1orf175	374977	genome.wustl.edu	36	1	54917681	54917681	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	54917681	54917681	G	T	SNP	C1orf175	NM_001039464	human	genbank	54_36p	+1	validated	missense	c.2207	p.R736L	0.989	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
DST	667	genome.wustl.edu	36	6	56507878	56507878	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	6	56507878	56507878	C	A	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	splice_site	c.10050+1	e54+1	1.000	-	-	-	no_errors
DST	667	genome.wustl.edu	36	6	56612065	56612065	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	6	56612065	56612065	A	G	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.2282	p.I761T	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_SM00243	-	no_errors
SLC43A3	29015	genome.wustl.edu	36	11	56949675	56949675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	11	56949675	56949675	C	T	SNP	SLC43A3	NM_014096	human	genbank	54_36p	-1	validated	missense	c.229	p.G77R	1.000	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter	-	no_errors
OTX1	5013	genome.wustl.edu	36	2	63136439	63136439	+	Silent	SNP	G	G	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	2	63136439	63136439	G	C	SNP	OTX1	NM_014562	human	genbank	54_36p	+1	reviewed	silent	c.549	p.S183	0.621	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_TF_Otx	-	no_errors
NRXN2	9379	genome.wustl.edu	36	11	64184978	64184978	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	11	64184978	64184978	G	T	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	missense	c.2008	p.L670I	0.489	superfamily_Concanavalin A-like lectins/glucanases	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00294	-	no_errors
LOC441442	0	genome.wustl.edu	36	9	67846989	67846989	+	RNA	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	9	67846989	67846989	G	A	SNP	LOC441442	XR_037084	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.336	-	-	-	pseudogene
ZNF366	167465	genome.wustl.edu	36	5	71775696	71775696	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	5	71775696	71775696	G	T	SNP	ZNF366	NM_152625	human	genbank	54_36p	-1	provisional	nonsense	c.1878	p.Y626*	0.032	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
UBE2O	63893	genome.wustl.edu	36	17	71906013	71906013	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	17	71906013	71906013	T	G	SNP	UBE2O	NM_022066	human	genbank	54_36p	-1	validated	missense	c.1943	p.H648P	1.000	NULL	PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBQ-conjugat/RWD-like,HMMSmart_UBCc,HMMPfam_UQ_con	-	no_errors
KIAA2022	340533	genome.wustl.edu	36	X	73877085	73877085	+	Silent	SNP	G	G	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	X	73877085	73877085	G	T	SNP	KIAA2022	NM_001008537	human	genbank	54_36p	-1	validated	silent	c.4032	p.P1344	1.000	NULL	NULL	-	no_errors
LOC441505	441505	genome.wustl.edu	36	X	85227748	85227748	+	RNA	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	X	85227748	85227748	G	A	SNP	LOC441505	XR_016229	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
RASA1	5921	genome.wustl.edu	36	5	86716923	86716923	+	Silent	SNP	T	T	G	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	5	86716923	86716923	T	G	SNP	RASA1	NM_002890	human	genbank	54_36p	+1	reviewed	silent	c.2808	p.S936	1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors
CEP290	80184	genome.wustl.edu	36	12	86980623	86980623	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	12	86980623	86980623	G	A	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	missense	c.6334	p.R2112W	0.996	NULL	NULL	-	no_errors
BARHL2	343472	genome.wustl.edu	36	1	90952853	90952853	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	90952853	90952853	G	C	SNP	BARHL2	NM_020063	human	genbank	54_36p	-1	validated	missense	c.674	p.P225R	1.000	superfamily_Homeodomain_like	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
SLC15A1	6564	genome.wustl.edu	36	13	98160121	98160121	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	13	98160121	98160121	C	T	SNP	SLC15A1	NM_005073	human	genbank	54_36p	-1	validated	splice_site	c.945+1	e12+1	1.000	-	-	-	no_errors
SLC5A8	160728	genome.wustl.edu	36	12	100084436	100084436	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	12	100084436	100084436	G	C	SNP	SLC5A8	NM_145913	human	genbank	54_36p	-1	validated	missense	c.1493	p.T498S	0.999	NULL	HMMPfam_SSF	-	no_errors
TCEAL4	79921	genome.wustl.edu	36	X	102728396	102728396	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	X	102728396	102728396	A	C	SNP	TCEAL4	NM_001006935	human	genbank	54_36p	+1	reviewed	missense	c.137	p.K46T	0.014	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
LOC100130492	0	genome.wustl.edu	36	12	103432202	103432202	+	RNA	SNP	T	T	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	12	103432202	103432202	T	C	SNP	LOC100130492	XR_038654	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
C6orf224	222521	genome.wustl.edu	36	6	109921981	109921981	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	6	109921981	109921981	G	A	SNP	C6orf224	NM_173559	human	genbank	54_36p	-1	predicted	missense	c.626	p.T209I	0.979	NULL	NULL	-	no_errors
TSPYL1	7259	genome.wustl.edu	36	6	116706630	116706630	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	6	116706630	116706630	T	A	SNP	TSPYL1	NM_003309	human	genbank	54_36p	-1	validated	missense	c.1057	p.T353S	0.998	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
TBX15	6913	genome.wustl.edu	36	1	119229323	119229323	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	119229323	119229323	G	A	SNP	TBX15	NM_152380	human	genbank	54_36p	-1	validated	missense	c.1046	p.S349L	1.000	NULL	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
GSN	2934	genome.wustl.edu	36	9	123129569	123129569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	9	123129569	123129569	G	A	SNP	GSN	NM_000177	human	genbank	54_36p	+1	reviewed	missense	c.1903	p.G635S	1.000	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin	-	no_errors
NEK11	79858	genome.wustl.edu	36	3	132231399	132231399	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	3	132231399	132231399	C	T	SNP	NEK11	NM_024800	human	genbank	54_36p	+1	reviewed	nonsense	c.157	p.R53*	0.939	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
WDR91	29062	genome.wustl.edu	36	7	134544092	134544092	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	7	134544092	134544092	G	T	SNP	WDR91	NM_014149	human	genbank	54_36p	-1	validated	missense	c.502	p.Q168K	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
TRIM24	8805	genome.wustl.edu	36	7	137796448	137796448	+	Silent	SNP	T	T	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	7	137796448	137796448	T	C	SNP	TRIM24	ENST00000378381	human	ensembl	54_36p	+1	known	silent	c.99	p.I33	0.000	NULL	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502	-	no_errors
TMEM22	80723	genome.wustl.edu	36	3	138056095	138056095	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	3	138056095	138056095	G	A	SNP	TMEM22	NM_001097599	human	genbank	54_36p	+1	validated	missense	c.103	p.D35N	1.000	NULL	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
CEP70	80321	genome.wustl.edu	36	3	139696609	139696609	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	3	139696609	139696609	C	T	SNP	CEP70	NM_024491	human	genbank	54_36p	-1	validated	splice_site	c.1733-1	e16-1	1.000	-	-	-	no_errors
IDS	3423	genome.wustl.edu	36	X	148392629	148392629	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	X	148392629	148392629	C	T	SNP	IDS	ENST00000370438	human	ensembl	54_36p	-1	known	missense	c.536	p.R179H	0.000	NULL	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
GALNT5	11227	genome.wustl.edu	36	2	157823276	157823276	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	2	157823276	157823276	G	A	SNP	GALNT5	NM_014568	human	genbank	54_36p	+1	provisional	missense	c.436	p.G146R	0.001	NULL	superfamily_Nucleotide-diphospho-sugar transferases,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin	-	no_errors
TIPARP	25976	genome.wustl.edu	36	3	157878198	157878198	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	3	157878198	157878198	C	T	SNP	TIPARP	NM_015508	human	genbank	54_36p	+1	provisional	silent	c.18	p.T6	0.585	NULL	HMMPfam_zf-CCCH,superfamily_SSF56399,HMMPfam_PARP	-	no_errors
LPA	4018	genome.wustl.edu	36	6	160947549	160947549	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	6	160947549	160947549	G	A	SNP	LPA	NM_005577	human	genbank	54_36p	-1	validated	missense	c.2735	p.A912V	0.000	superfamily_Kringle-like	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
FIGN	55137	genome.wustl.edu	36	2	164176481	164176481	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	2	164176481	164176481	G	T	SNP	FIGN	NM_018086	human	genbank	54_36p	-1	validated	missense	c.107	p.A36D	1.000	NULL	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,PatternScan_AAA	-	no_errors
KIF21B	23046	genome.wustl.edu	36	1	199220676	199220676	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	199220676	199220676	G	A	SNP	KIF21B	NM_017596	human	genbank	54_36p	-1	provisional	missense	c.3737	p.P1246L	1.000	superfamily_WD40_like	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
NAV1	89796	genome.wustl.edu	36	1	200044452	200044452	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	200044452	200044452	A	C	SNP	NAV1	NM_020443	human	genbank	54_36p	+1	reviewed	splice_site	c.4030-2	e19-2	0.979	-	-	-	no_errors
FAM71A	149647	genome.wustl.edu	36	1	210864974	210864974	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	210864974	210864974	G	A	SNP	FAM71A	NM_153606	human	genbank	54_36p	+1	predicted	silent	c.132	p.P44	0.001	NULL	NULL	-	no_errors
SPHAR	10638	genome.wustl.edu	36	1	227507655	227507655	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	227507655	227507655	A	C	SNP	SPHAR	NM_006542	human	genbank	54_36p	+1	validated	missense	c.151	p.N51H	0.000	NULL	NULL	-	no_errors
COL4A4	1286	genome.wustl.edu	36	2	227671747	227671747	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	2	227671747	227671747	C	A	SNP	COL4A4	NM_000092	human	genbank	54_36p	-1	reviewed	missense	c.1111	p.D371Y	1.000	HMMPfam_Collagen	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	-	no_errors
ALPP	250	genome.wustl.edu	36	2	232954491	232954491	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	2	232954491	232954491	C	G	SNP	ALPP	NM_001632	human	genbank	54_36p	+1	reviewed	missense	c.1350	p.D450E	0.000	superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc	superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE	-	no_errors
ACTN2	88	genome.wustl.edu	36	1	234985044	234985044	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	234985044	234985044	G	A	SNP	ACTN2	NM_001103	human	genbank	54_36p	+1	reviewed	missense	c.2077	p.D693N	1.000	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,HMMPfam_efhand_Ca_insen	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237940345	237940345	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	2	237940345	237940345	G	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.5224	p.R1742W	0.997	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
OR2M4	26245	genome.wustl.edu	36	1	246469653	246469653	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	246469653	246469653	C	T	SNP	OR2M4	NM_017504	human	genbank	54_36p	+1	provisional	missense	c.800	p.T267M	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ENSG00000111788	0	genome.wustl.edu	36	12	9337718	9337719	+	In_Frame_Ins	INS	-	-	GGTTACTCA	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	12	9337718	9337719	-	GGTTACTCA	INS	ENSG00000111788	ENST00000341155	human	ensembl	54_36p	+1	known	in_frame_ins	c.338_339	p.117in_frame_insVTQ	1.000:1.000	superfamily_SSF52540,HMMSmart_DEXDc2	superfamily_SSF52540,HMMSmart_DEXDc2,HMMPfam_DEAD_2,HMMSmart_HELICc2	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26565600	26565601	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	17	26565600	26565601	-	A	INS	NF1	NM_001042492	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.1398_1399	p.T466fs	1.000:1.000	NULL	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors
UTX	7403	genome.wustl.edu	36	X	44822613	44822614	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	TT	TT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	X	44822613	44822614	TT	-	DEL	UTX	NM_021140	human	genbank	54_36p	+1	validated	frame_shift_del	c.2857_2858	p.F953fs	1.000:1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMSmart_JmjC,HMMPfam_JmjC	(deletion:cds_exon[44822589,44822694])	no_errors
B4GALT5	9334	genome.wustl.edu	36	20	47706547	47706553	+	Frame_Shift_Del	DEL	GCACTCC	GCACTCC	-	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	GCACTCC	GCACTCC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	20	47706547	47706553	GCACTCC	-	DEL	B4GALT5	NM_004776	human	genbank	54_36p	-1	validated	frame_shift_del	c.215_209	p.R70fs	0.997:1.000:1.000:1.000:1.000:0.996:1.000	NULL	superfamily_SSF53448,HMMPfam_Galactosyl_T_2	(deletion:cds_exon[47706512,47706646])	no_errors
TNFAIP8L3	388121	genome.wustl.edu	36	15	49137718	49137718	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	15	49137718	49137718	C	-	DEL	TNFAIP8L3	NM_207381	human	genbank	54_36p	-1	provisional	frame_shift_del	c.531	p.I178fs	1.000	HMMPfam_DUF758	HMMPfam_DUF758	(deletion:cds_exon[49137370,49137932])	no_errors
EVL	51466	genome.wustl.edu	36	14	99633740	99633742	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	AAG	AAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	14	99633740	99633742	AAG	-	DEL	EVL	NM_016337	human	genbank	54_36p	+1	validated	in_frame_del	c.350_352	p.E118in_frame_del	1.000:0.991:1.000	superfamily_SSF50729	superfamily_SSF50729,HMMPfam_WH1,HMMSmart_WH1,HMMPfam_VASP_tetra	(deletion:cds_exon[99633571,99633748])	no_errors
FLJ43860	389690	genome.wustl.edu	36	8	142515975	142515977	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	AAG	AAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	8	142515975	142515977	AAG	-	DEL	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	in_frame_del	c.3392_3390	p.F1131in_frame_del	0.986:0.986:0.974	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	(deletion:cds_exon[142515968,142516144])	pseudogene
TOR1AIP2	163590	genome.wustl.edu	36	1	178082263	178082264	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-30-1714-01A-02W-0633-09	TCGA-30-1714-10A-01W-0633-09	GA	GA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	eb2a14f5-3531-4ac2-857a-0a669371be62	64e6b0b5-cf9c-4872-be9f-867a0a40e8de	1	178082263	178082264	GA	-	DEL	TOR1AIP2	NM_145034	human	genbank	54_36p	-1	provisional	frame_shift_del	c.979_978	p.P327fs	0.977:0.981	HMMPfam_LAP1C	HMMPfam_LAP1C	(deletion:cds_exon[178081829,178082586])	no_errors