Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
FOXM1	2305	genome.wustl.edu	36	12	2851595	2851595	+	Silent	SNP	T	T	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	12	2851595	2851595	T	G	SNP	FOXM1	NM_202002	human	genbank	54_36p	-1	validated	silent	c.582	p.G194	0.350	NULL	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
CCDC27	148870	genome.wustl.edu	36	1	3659155	3659155	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	3659155	3659155	A	G	SNP	CCDC27	NM_152492	human	genbank	54_36p	+1	validated	missense	c.250	p.K84E	0.015	NULL	NULL	-	no_errors
ZNF594	84622	genome.wustl.edu	36	17	5026538	5026538	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	17	5026538	5026538	T	C	SNP	ZNF594	NM_032530	human	genbank	54_36p	-1	validated	missense	c.1738	p.S580G	0.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519167	7519167	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	17	7519167	7519167	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.488	p.Y163C	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
FASTKD3	79072	genome.wustl.edu	36	5	7919095	7919095	+	Silent	SNP	A	A	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	5	7919095	7919095	A	T	SNP	FASTKD3	NM_024091	human	genbank	54_36p	-1	validated	silent	c.1440	p.G480	0.161	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors
LDLR	3949	genome.wustl.edu	36	19	11074434	11074434	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	19	11074434	11074434	C	A	SNP	LDLR	NM_000527	human	genbank	54_36p	+1	reviewed	nonsense	c.285	p.C95*	0.921	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors
C6orf105	84830	genome.wustl.edu	36	6	11831635	11831635	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	6	11831635	11831635	G	A	SNP	C6orf105	NM_032744	human	genbank	54_36p	-1	validated	silent	c.591	p.F197	0.985	HMMPfam_Far-17a_AIG1	HMMPfam_Far-17a_AIG1	-	no_errors
DHTKD1	55526	genome.wustl.edu	36	10	12202883	12202883	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	10	12202883	12202883	C	A	SNP	DHTKD1	NM_018706	human	genbank	54_36p	+1	validated	missense	c.2750	p.T917N	1.000	NULL	superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh,HMMPfam_Transket_pyr	-	no_errors
BOD1L	259282	genome.wustl.edu	36	4	13212500	13212500	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	4	13212500	13212500	C	G	SNP	BOD1L	NM_148894	human	genbank	54_36p	-1	validated	missense	c.5122	p.D1708H	0.047	superfamily_SSF81995	superfamily_SSF81995,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
UNC13A	23025	genome.wustl.edu	36	19	17598486	17598486	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	19	17598486	17598486	G	A	SNP	UNC13A	NM_001080421	human	genbank	54_36p	-1	provisional	silent	c.4293	p.D1431	0.969	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors
LOC646090	646090	genome.wustl.edu	36	15	18717281	18717281	+	RNA	SNP	C	C	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	15	18717281	18717281	C	G	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
POTEB	339010	genome.wustl.edu	36	15	19324011	19324011	+	Silent	SNP	T	T	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	15	19324011	19324011	T	C	SNP	POTEB	NM_207355	human	genbank	54_36p	-1	validated	silent	c.1089	p.K363	0.001	superfamily_Ankyrin repeat,HMMSmart_SM00248	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors
SLIT2	9353	genome.wustl.edu	36	4	20229548	20229548	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	4	20229548	20229548	G	T	SNP	SLIT2	NM_004787	human	genbank	54_36p	+1	provisional	missense	c.4408	p.A1470S	1.000	HMMSmart_SM00041	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00365,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00274,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
LRP10	26020	genome.wustl.edu	36	14	22414500	22414500	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	14	22414500	22414500	G	T	SNP	LRP10	NM_014045	human	genbank	54_36p	+1	validated	missense	c.503	p.G168V	0.910	HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_CUB,PatternScan_LDLRA_1	-	no_errors
LOXL2	4017	genome.wustl.edu	36	8	23230486	23230486	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	8	23230486	23230486	C	T	SNP	LOXL2	NM_002318	human	genbank	54_36p	-1	reviewed	silent	c.1557	p.A519	0.316	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE	-	no_errors
LRRC16B	90668	genome.wustl.edu	36	14	23596035	23596035	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	14	23596035	23596035	A	T	SNP	LRRC16B	NM_138360	human	genbank	54_36p	+1	validated	missense	c.1024	p.S342C	1.000	superfamily_RNI-like,HMMSmart_SM00368	superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
KIAA0100	9703	genome.wustl.edu	36	17	23989085	23989085	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	17	23989085	23989085	G	T	SNP	KIAA0100	NM_014680	human	genbank	54_36p	-1	validated	nonsense	c.1667	p.S556*	0.004	NULL	HMMPfam_Mqo,HMMPfam_Fmp27_GFWDK,HMMPfam_Apt1	-	no_errors
GPR113	165082	genome.wustl.edu	36	2	26388053	26388053	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	2	26388053	26388053	C	T	SNP	GPR113	NM_153835	human	genbank	54_36p	-1	validated	missense	c.1450	p.G484S	0.002	NULL	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
MAP3K6	9064	genome.wustl.edu	36	1	27557307	27557307	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	27557307	27557307	G	C	SNP	MAP3K6	NM_004672	human	genbank	54_36p	-1	reviewed	missense	c.2867	p.P956R	0.013	NULL	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM/Pointed domain	-	no_errors
LOC390557	0	genome.wustl.edu	36	15	28124252	28124252	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	15	28124252	28124252	G	T	SNP	LOC390557	XM_001726973	human	genbank	54_36p	+1	model	missense	c.212	p.G71V	0.994	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
OR2J3	442186	genome.wustl.edu	36	6	29188406	29188406	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	6	29188406	29188406	T	A	SNP	OR2J3	NM_001005216	human	genbank	54_36p	+1	validated	missense	c.760	p.F254I	0.502	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GDF5	8200	genome.wustl.edu	36	20	33485514	33485514	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	20	33485514	33485514	C	T	SNP	GDF5	NM_000557	human	genbank	54_36p	-1	reviewed	silent	c.1113	p.E371	0.990	NULL	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
NRP1	8829	genome.wustl.edu	36	10	33523680	33523680	+	Silent	SNP	G	G	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	10	33523680	33523680	G	C	SNP	NRP1	ENST00000374828	human	ensembl	54_36p	-1	known	silent	c.228	p.L76	0.001	NULL	NULL	-	no_errors
ZBTB5	9925	genome.wustl.edu	36	9	37432075	37432075	+	Silent	SNP	G	G	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	9	37432075	37432075	G	C	SNP	ZBTB5	NM_014872	human	genbank	54_36p	-1	validated	silent	c.474	p.L158	0.970	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
BRCA1	672	genome.wustl.edu	36	17	38498676	38498676	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	17	38498676	38498676	T	A	SNP	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	nonsense	c.2398	p.K800*	0.001	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain	-	no_errors
SLFNL1	200172	genome.wustl.edu	36	1	41258666	41258666	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	41258666	41258666	A	C	SNP	SLFNL1	NM_144990	human	genbank	54_36p	-1	provisional	missense	c.254	p.V85G	0.986	NULL	HMMPfam_AAA_4	-	no_errors
OXER1	165140	genome.wustl.edu	36	2	42844666	42844666	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	2	42844666	42844666	G	T	SNP	OXER1	NM_148962	human	genbank	54_36p	-1	validated	missense	c.158	p.S53Y	0.166	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DYNC2LI1	51626	genome.wustl.edu	36	2	43876576	43876576	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	2	43876576	43876576	T	A	SNP	DYNC2LI1	NM_016008	human	genbank	54_36p	+1	validated	missense	c.551	p.I184N	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZSWIM3	140831	genome.wustl.edu	36	20	43940574	43940574	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	20	43940574	43940574	A	T	SNP	ZSWIM3	NM_080752	human	genbank	54_36p	+1	validated	missense	c.1970	p.Q657L	0.269	NULL	HMMPfam_MULE,HMMPfam_SWIM,HMMSmart_ZnF_PMZ	-	no_errors
CROP	51747	genome.wustl.edu	36	17	46177087	46177087	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	17	46177087	46177087	G	C	SNP	CROP	NM_006107	human	genbank	54_36p	+1	reviewed	missense	c.607	p.D203H	1.000	HMMPfam_LUC7	HMMPfam_LUC7	-	no_errors
MAST2	23139	genome.wustl.edu	36	1	46274246	46274246	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	46274246	46274246	G	A	SNP	MAST2	NM_015112	human	genbank	54_36p	+1	validated	missense	c.5318	p.R1773K	0.000	NULL	HMMPfam_DUF1908,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ	-	no_errors
DMRTC2	63946	genome.wustl.edu	36	19	47046564	47046564	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	19	47046564	47046564	C	A	SNP	DMRTC2	NM_001040283	human	genbank	54_36p	+1	validated	missense	c.947	p.P316H	0.971	NULL	superfamily_Cysteine-rich DNA binding domain (DM domain),HMMPfam_DM,HMMSmart_SM00301,PatternScan_DM_1	-	no_errors
PSG3	5671	genome.wustl.edu	36	19	47936327	47936327	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	19	47936327	47936327	C	T	SNP	PSG3	NM_021016	human	genbank	54_36p	-1	validated	missense	c.50	p.G17E	0.025	HMMPfam_V-set	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors
FOXP3	50943	genome.wustl.edu	36	X	48997441	48997441	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	X	48997441	48997441	A	G	SNP	FOXP3	NM_014009	human	genbank	54_36p	-1	reviewed	missense	c.848	p.V283A	0.002	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
ATF7	11016	genome.wustl.edu	36	12	52211826	52211826	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	12	52211826	52211826	T	G	SNP	ATF7	NM_006856	human	genbank	54_36p	-1	validated	missense	c.896	p.H299P	1.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_ATPASE_ALPHA_BETA,HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC	-	no_errors
UNC13C	440279	genome.wustl.edu	36	15	52703287	52703287	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	15	52703287	52703287	A	T	SNP	UNC13C	NM_001080534	human	genbank	54_36p	+1	provisional	missense	c.6202	p.I2068F	0.997	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors
LRP8	7804	genome.wustl.edu	36	1	53489042	53489042	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	53489042	53489042	C	G	SNP	LRP8	NM_004631	human	genbank	54_36p	-1	reviewed	missense	c.2584	p.D862H	1.000	NULL	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors
OR4D1	26689	genome.wustl.edu	36	17	53588437	53588437	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	17	53588437	53588437	C	G	SNP	OR4D1	NM_012374	human	genbank	54_36p	+1	provisional	missense	c.924	p.C308W	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ZNF532	55205	genome.wustl.edu	36	18	54738571	54738571	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	18	54738571	54738571	T	G	SNP	ZNF532	NM_018181	human	genbank	54_36p	+1	validated	missense	c.2072	p.I691R	0.979	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55238464	55238464	+	Silent	SNP	T	T	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	10	55238464	55238464	T	A	SNP	PCDH15	ENST00000395445	human	ensembl	54_36p	-1	known	silent	c.5352	p.A1784	0.006	NULL	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin	-	no_errors
LRP1	4035	genome.wustl.edu	36	12	55865195	55865195	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	12	55865195	55865195	C	T	SNP	LRP1	NM_002332	human	genbank	54_36p	+1	validated	nonsense	c.6403	p.R2135*	0.991	superfamily_YWTD domain	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors
LOC645688	645688	genome.wustl.edu	36	17	55867753	55867753	+	RNA	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	17	55867753	55867753	C	T	SNP	LOC645688	XR_017614	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.002	-	-	-	pseudogene
CDH7	1005	genome.wustl.edu	36	18	61662116	61662116	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	18	61662116	61662116	C	T	SNP	CDH7	NM_004361	human	genbank	54_36p	+1	reviewed	missense	c.1070	p.P357L	0.981	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
SNX15	29907	genome.wustl.edu	36	11	64551642	64551642	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	11	64551642	64551642	G	T	SNP	SNX15	NM_013306	human	genbank	54_36p	+1	reviewed	missense	c.57	p.R19S	0.999	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00745,HMMPfam_MIT	-	no_errors
ZFYVE26	23503	genome.wustl.edu	36	14	67322644	67322644	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	14	67322644	67322644	G	A	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	missense	c.3079	p.L1027F	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors
DNAJC12	56521	genome.wustl.edu	36	10	69253141	69253141	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	10	69253141	69253141	C	G	SNP	DNAJC12	NM_021800	human	genbank	54_36p	-1	reviewed	missense	c.94	p.A32P	0.998	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	-	no_errors
SIRT1	23411	genome.wustl.edu	36	10	69317227	69317227	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	10	69317227	69317227	C	T	SNP	SIRT1	NM_012238	human	genbank	54_36p	+1	validated	silent	c.477	p.S159	0.996	NULL	superfamily_SSF52467,HMMPfam_SIR2	-	no_errors
CLEC18B	0	genome.wustl.edu	36	16	73009677	73009677	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	16	73009677	73009677	G	A	SNP	CLEC18B	NM_001011880	human	genbank	54_36p	-1	validated	silent	c.237	p.A79	0.655	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
DNAH17	8632	genome.wustl.edu	36	17	73958016	73958016	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	17	73958016	73958016	C	T	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.10940	p.R3647H	1.000	NULL	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors
ANGEL1	23357	genome.wustl.edu	36	14	76326728	76326728	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	14	76326728	76326728	A	G	SNP	ANGEL1	NM_015305	human	genbank	54_36p	-1	validated	missense	c.1831	p.C611R	0.587	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	-	no_errors
ARNT2	9915	genome.wustl.edu	36	15	78554438	78554438	+	Silent	SNP	T	T	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	15	78554438	78554438	T	C	SNP	ARNT2	NM_014862	human	genbank	54_36p	+1	reviewed	silent	c.441	p.D147	0.994	superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3,HMMSmart_SM00086	-	no_errors
BNC1	646	genome.wustl.edu	36	15	81717643	81717643	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	15	81717643	81717643	G	T	SNP	BNC1	NM_001717	human	genbank	54_36p	-1	reviewed	missense	c.2540	p.S847Y	0.002	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
ALX1	8092	genome.wustl.edu	36	12	84201590	84201590	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	12	84201590	84201590	G	A	SNP	ALX1	NM_006982	human	genbank	54_36p	+1	reviewed	silent	c.336	p.E112	0.950	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors
PEX11A	8800	genome.wustl.edu	36	15	88030667	88030667	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	15	88030667	88030667	T	A	SNP	PEX11A	NM_003847	human	genbank	54_36p	-1	provisional	missense	c.171	p.K57N	1.000	HMMPfam_PEX11	HMMPfam_PEX11	-	no_errors
WAPAL	23063	genome.wustl.edu	36	10	88267627	88267627	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	10	88267627	88267627	C	G	SNP	WAPAL	NM_015045	human	genbank	54_36p	-1	validated	missense	c.180	p.K60N	1.000	NULL	superfamily_ARM repeat,HMMPfam_WAPL	-	no_errors
HFM1	164045	genome.wustl.edu	36	1	91504253	91504253	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	91504253	91504253	C	T	SNP	HFM1	NM_001017975	human	genbank	54_36p	-1	validated	splice_site	c.3884-1	e35-1	0.997	-	-	-	no_errors
LOC401602	401602	genome.wustl.edu	36	X	92365092	92365092	+	RNA	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	X	92365092	92365092	C	T	SNP	LOC401602	XR_016272	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DCT	1638	genome.wustl.edu	36	13	93919262	93919262	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	13	93919262	93919262	C	A	SNP	DCT	NM_001922	human	genbank	54_36p	-1	validated	missense	c.334	p.G112C	1.000	superfamily_Di-copper_centre	superfamily_Di-copper_centre,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2	-	no_errors
JMJD2D	55693	genome.wustl.edu	36	11	94371314	94371314	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	11	94371314	94371314	T	A	SNP	JMJD2D	NM_018039	human	genbank	54_36p	+1	validated	missense	c.1130	p.L377H	0.000	NULL	HMMPfam_JmjN,HMMSmart_JmjC,HMMPfam_JmjC	-	no_errors
ANKRD20B	729171	genome.wustl.edu	36	2	94858523	94858523	+	RNA	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	2	94858523	94858523	C	T	SNP	ANKRD20B	NR_003366	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.001	-	-	-	pseudogene
BDKRB1	623	genome.wustl.edu	36	14	95800304	95800304	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	14	95800304	95800304	A	G	SNP	BDKRB1	NM_000710	human	genbank	54_36p	+1	reviewed	missense	c.532	p.I178V	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
LOC643981	643981	genome.wustl.edu	36	10	97344819	97344819	+	RNA	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	10	97344819	97344819	G	T	SNP	LOC643981	XR_016514	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
POP1	10940	genome.wustl.edu	36	8	99211535	99211535	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	8	99211535	99211535	A	G	SNP	POP1	NM_015029	human	genbank	54_36p	+1	reviewed	missense	c.640	p.M214V	1.000	HMMPfam_POP1	HMMPfam_POP1,HMMPfam_POPLD	-	no_errors
LOC728088	728088	genome.wustl.edu	36	13	99601021	99601021	+	RNA	SNP	A	A	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	13	99601021	99601021	A	C	SNP	LOC728088	XR_015354	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
VPS13B	157680	genome.wustl.edu	36	8	100202610	100202610	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	8	100202610	100202610	C	T	SNP	VPS13B	NM_017890	human	genbank	54_36p	+1	reviewed	nonsense	c.967	p.Q323*	1.000	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
C3orf26	84319	genome.wustl.edu	36	3	101369271	101369271	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	3	101369271	101369271	G	C	SNP	C3orf26	NM_032359	human	genbank	54_36p	+1	predicted	splice_site	c.416-1	e6-1	1.000	-	-	-	no_errors
RELN	5649	genome.wustl.edu	36	7	103344778	103344778	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	7	103344778	103344778	C	T	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	missense	c.317	p.G106D	0.988	HMMPfam_Reeler	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors
LOC643949	643949	genome.wustl.edu	36	11	107284359	107284359	+	RNA	SNP	C	T	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	11	107284359	107284359	C	T	SNP	LOC643949	XR_016405	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DOCK4	9732	genome.wustl.edu	36	7	111185984	111185984	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	7	111185984	111185984	G	T	SNP	DOCK4	NM_014705	human	genbank	54_36p	-1	reviewed	missense	c.4234	p.H1412N	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
ANAPC1	64682	genome.wustl.edu	36	2	112283187	112283187	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	2	112283187	112283187	C	A	SNP	ANAPC1	NM_022662	human	genbank	54_36p	-1	validated	missense	c.3640	p.A1214S	1.000	NULL	HMMPfam_PC_rep	-	no_errors
ENSG00000163098	0	genome.wustl.edu	36	2	113327672	113327672	+	Silent	SNP	A	A	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	2	113327672	113327672	A	G	SNP	ENSG00000163098	ENST00000295249	human	ensembl	54_36p	+1	known	silent	c.174	p.L58	0.001	HMMPfam_BIR,HMMSmart_BIR,superfamily_SSF57924	HMMPfam_BIR,HMMSmart_BIR,superfamily_SSF57924	-	no_errors
FOXP2	93986	genome.wustl.edu	36	7	114089384	114089384	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	7	114089384	114089384	A	C	SNP	FOXP2	NM_148898	human	genbank	54_36p	+1	reviewed	missense	c.1751	p.H584P	1.000	HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2	-	no_errors
RFC5	5985	genome.wustl.edu	36	12	116953420	116953420	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	12	116953420	116953420	T	A	SNP	RFC5	NM_007370	human	genbank	54_36p	+1	reviewed	missense	c.977	p.I326N	0.998	HMMPfam_Rep_fac_C,superfamily_Pol_clamp_load_C	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,HMMPfam_Rep_fac_C,superfamily_Pol_clamp_load_C	-	no_errors
C9orf126	286205	genome.wustl.edu	36	9	126773902	126773902	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	9	126773902	126773902	T	C	SNP	C9orf126	NM_173690	human	genbank	54_36p	-1	validated	missense	c.1511	p.N504S	1.000	NULL	NULL	-	no_errors
ACAD11	84129	genome.wustl.edu	36	3	133820255	133820255	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	3	133820255	133820255	C	T	SNP	ACAD11	NM_032169	human	genbank	54_36p	-1	validated	missense	c.1327	p.G443R	0.999	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N	superfamily_Protein kinase-like (PK-like),HMMPfam_APH,PatternScan_PROTEIN_KINASE_TYR,superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like	-	no_errors
TG	7038	genome.wustl.edu	36	8	133952812	133952812	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	8	133952812	133952812	A	T	SNP	TG	NM_003235	human	genbank	54_36p	+1	validated	missense	c.312	p.L104F	0.011	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
LCT	3938	genome.wustl.edu	36	2	136310907	136310907	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	2	136310907	136310907	G	C	SNP	LCT	NM_002299	human	genbank	54_36p	-1	reviewed	missense	c.303	p.S101R	0.079	superfamily_Glyco_hydro_cat	superfamily_Glyco_hydro_cat,HMMPfam_Glyco_hydro_1,PatternScan_GLYCOSYL_HYDROL_F1_2,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
DGKI	9162	genome.wustl.edu	36	7	136726534	136726534	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	7	136726534	136726534	C	A	SNP	DGKI	NM_004717	human	genbank	54_36p	-1	reviewed	missense	c.3170	p.G1057V	1.000	NULL	PatternScan_ZF_DAG_PE_1,HMMSmart_C1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_DAGKc,HMMPfam_DAGK_acc,HMMSmart_DAGKa,superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors
CLSTN2	64084	genome.wustl.edu	36	3	141606170	141606170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	3	141606170	141606170	C	T	SNP	CLSTN2	NM_022131	human	genbank	54_36p	+1	validated	missense	c.509	p.T170M	0.364	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
uc009wky.1	0	genome.wustl.edu	36	1	147641729	147641729	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	147641729	147641729	C	G	SNP	uc009wky.1	ENST00000369178	human	ensembl	54_36p	+1	known	missense	c.415	p.R139G	0.015	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors
TTC29	83894	genome.wustl.edu	36	4	147848104	147848104	+	Silent	SNP	A	A	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	4	147848104	147848104	A	G	SNP	TTC29	NM_031956	human	genbank	54_36p	-1	validated	silent	c.1380	p.R460	0.000	NULL	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors
TM4SF4	7104	genome.wustl.edu	36	3	150676303	150676303	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	3	150676303	150676303	A	G	SNP	TM4SF4	NM_004617	human	genbank	54_36p	+1	reviewed	missense	c.178	p.I60V	1.000	HMMPfam_L6_membrane	HMMPfam_L6_membrane	-	no_errors
HTR5A	3361	genome.wustl.edu	36	7	154493870	154493870	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	7	154493870	154493870	G	T	SNP	HTR5A	NM_024012	human	genbank	54_36p	+1	reviewed	missense	c.328	p.G110C	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
BCAN	63827	genome.wustl.edu	36	1	154893461	154893461	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	154893461	154893461	G	C	SNP	BCAN	NM_021948	human	genbank	54_36p	+1	validated	missense	c.2158	p.G720R	0.986	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00406,PatternScan_IG_MHC,superfamily_C-type lectin-like,HMMSmart_SM00445,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
INSRR	3645	genome.wustl.edu	36	1	155082200	155082200	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	155082200	155082200	G	T	SNP	INSRR	NM_014215	human	genbank	54_36p	-1	validated	missense	c.2009	p.P670Q	0.984	superfamily_FN_III-like,HMMSmart_FN3	superfamily_SSF52058,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Grow_fac_recept,HMMSmart_FU,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors
ODZ2	57451	genome.wustl.edu	36	5	167607113	167607113	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	5	167607113	167607113	T	G	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	+1	known	missense	c.6588	p.N2196K	1.000	NULL	HMMPfam_Ten_N,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Carboxypeptidase regulatory domain,superfamily_NHL repeat,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors
C1orf112	55732	genome.wustl.edu	36	1	168078263	168078263	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	168078263	168078263	G	A	SNP	C1orf112	NM_018186	human	genbank	54_36p	+1	predicted	missense	c.1807	p.E603K	0.095	NULL	NULL	-	no_errors
STK10	6793	genome.wustl.edu	36	5	171453553	171453553	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	5	171453553	171453553	G	C	SNP	STK10	NM_005990	human	genbank	54_36p	-1	reviewed	missense	c.1022	p.T341S	0.970	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
COL23A1	91522	genome.wustl.edu	36	5	177607157	177607157	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	5	177607157	177607157	G	A	SNP	COL23A1	NM_173465	human	genbank	54_36p	-1	validated	silent	c.1272	p.G424	1.000	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
LOC728664	728664	genome.wustl.edu	36	2	178570282	178570282	+	RNA	SNP	A	A	T	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	2	178570282	178570282	A	T	SNP	LOC728664	XR_015711	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MASP1	5648	genome.wustl.edu	36	3	188420588	188420588	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	3	188420588	188420588	C	G	SNP	MASP1	NM_001879	human	genbank	54_36p	-1	reviewed	missense	c.2065	p.D689H	0.044	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	HMMSmart_SM00042,HMMPfam_CUB,superfamily_Spermadhesin CUB domain,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
IL8RB	3579	genome.wustl.edu	36	2	218708004	218708004	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	2	218708004	218708004	G	A	SNP	IL8RB	NM_001557	human	genbank	54_36p	+1	reviewed	missense	c.235	p.G79S	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ACTA1	58	genome.wustl.edu	36	1	227635232	227635232	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	1	227635232	227635232	C	A	SNP	ACTA1	NM_001100	human	genbank	54_36p	-1	reviewed	missense	c.148	p.G50C	1.000	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
DNAJB3	414061	genome.wustl.edu	36	2	234316960	234316960	+	Silent	SNP	G	G	C	novel	unknown	TCGA-30-1857-01A-02W-0639-09	TCGA-30-1857-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	cc2a574f-dc4d-42a8-9443-e9629c732e04	63bb87b6-b030-47ed-9e85-d7219ec8a137	2	234316960	234316960	G	C	SNP	DNAJB3	NM_001001394	human	genbank	54_36p	-1	validated	silent	c.342	p.L114	1.000	superfamily_DnaJ_N	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1	-	no_errors