Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error LYRM4 57128 genome.wustl.edu 36 6 5205959 5205959 + Missense_Mutation SNP C C A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 6 5205959 5205959 C A SNP LYRM4 NM_020408 human genbank 54_36p -1 validated missense c.7 p.A3S 1.000 NULL HMMPfam_Complex1_LYR - no_errors NLRP14 338323 genome.wustl.edu 36 11 7040309 7040309 + Missense_Mutation SNP G G T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 11 7040309 7040309 G T SNP NLRP14 NM_176822 human genbank 54_36p +1 reviewed missense c.2974 p.G992W 0.955 superfamily_SSF52047 superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047 - no_errors TP53 7157 genome.wustl.edu 36 17 7518937 7518937 + Nonsense_Mutation SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 17 7518937 7518937 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed nonsense c.637 p.R213* 0.380 HMMPfam_P53,superfamily_p53-like transcription factors HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain - no_errors DNAH5 1767 genome.wustl.edu 36 5 13841871 13841871 + Missense_Mutation SNP A A C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 5 13841871 13841871 A C SNP DNAH5 NM_001369 human genbank 54_36p -1 validated missense c.8601 p.I2867M 0.177 superfamily_SSF52540 HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy - no_errors THTPA 79178 genome.wustl.edu 36 14 23095973 23095973 + Missense_Mutation SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 14 23095973 23095973 G A SNP THTPA NM_024328 human genbank 54_36p +1 validated missense c.167 p.R56Q 0.649 HMMPfam_CYTH HMMPfam_CYTH - no_errors NFE2L3 9603 genome.wustl.edu 36 7 26191499 26191499 + Silent SNP T T C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 7 26191499 26191499 T C SNP NFE2L3 NM_004289 human genbank 54_36p +1 reviewed silent c.1656 p.D552 0.092 superfamily_Euk_transcr_DNA superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC - no_errors OR2B6 26212 genome.wustl.edu 36 6 28033321 28033321 + Silent SNP G G T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 6 28033321 28033321 G T SNP OR2B6 NM_012367 human genbank 54_36p +1 provisional silent c.324 p.G108 0.000 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors NF2 4771 genome.wustl.edu 36 22 28420740 28420740 + Splice_Site SNP G G C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 22 28420740 28420740 G C SNP NF2 NM_000268 human genbank 54_36p +1 reviewed splice_site c.1738-1 e16-1 1.000 - - - no_errors ENSG00000196161 0 genome.wustl.edu 36 16 28969566 28969566 + Silent SNP C C T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 16 28969566 28969566 C T SNP ENSG00000196161 ENST00000354734 human ensembl 54_36p +1 known silent c.496 p.L166 0.000 HMMPfam_NPIP HMMPfam_NPIP - no_errors DPCR1 135656 genome.wustl.edu 36 6 31027532 31027532 + Silent SNP T T A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 6 31027532 31027532 T A SNP DPCR1 ENST00000376299 human ensembl 54_36p +1 known silent c.174 p.P58 0.000 NULL NULL - no_errors TIAM1 7074 genome.wustl.edu 36 21 31414625 31414625 + Missense_Mutation SNP T T A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 21 31414625 31414625 T A SNP TIAM1 NM_003253 human genbank 54_36p -1 validated missense c.4708 p.S1570C 0.055 NULL superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_RBD,HMMSmart_RBD,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1 - no_errors CRYZL1 9946 genome.wustl.edu 36 21 33896449 33896449 + Nonsense_Mutation SNP C C A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 21 33896449 33896449 C A SNP CRYZL1 NM_145858 human genbank 54_36p -1 reviewed nonsense c.538 p.E180* 0.996 superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N superfamily_GroES-like,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N - no_errors GALT 2592 genome.wustl.edu 36 9 34638148 34638148 + Missense_Mutation SNP A A G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 9 34638148 34638148 A G SNP GALT NM_000155 human genbank 54_36p +1 reviewed missense c.544 p.N182D 1.000 HMMPfam_GalP_UDP_transf,superfamily_HIT-like,PatternScan_GAL_P_UDP_TRANSF_I HMMPfam_GalP_UDP_transf,superfamily_HIT-like,PatternScan_GAL_P_UDP_TRANSF_I,HMMPfam_GalP_UDP_tr_C - no_errors C5orf42 65250 genome.wustl.edu 36 5 37193674 37193674 + Missense_Mutation SNP C C A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 5 37193674 37193674 C A SNP C5orf42 NM_023073 human genbank 54_36p -1 predicted missense c.4506 p.Q1502H 0.591 NULL NULL - no_errors ENSG00000205794 0 genome.wustl.edu 36 4 39721592 39721592 + Silent SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 4 39721592 39721592 G A SNP ENSG00000205794 ENST00000381811 human ensembl 54_36p -1 known silent c.459 p.I153 1.000 superfamily_SSF54637 superfamily_SSF54637,HMMPfam_4HBT - no_errors LOC100128533 0 genome.wustl.edu 36 22 40402974 40402974 + Missense_Mutation SNP T T A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 22 40402974 40402974 T A SNP LOC100128533 XM_001724102 human genbank 54_36p -1 model missense c.102 p.K34N 0.821 HMMPfam_Laps HMMPfam_Laps - no_errors SLC14A2 8170 genome.wustl.edu 36 18 41497867 41497867 + Nonsense_Mutation SNP A A T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 18 41497867 41497867 A T SNP SLC14A2 NM_007163 human genbank 54_36p +1 validated nonsense c.1471 p.K491* 1.000 NULL HMMPfam_UT,PatternScan_MULTICOPPER_OXIDASE1 - no_errors MDFI 4188 genome.wustl.edu 36 6 41721903 41721903 + Missense_Mutation SNP G G T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 6 41721903 41721903 G T SNP MDFI NM_005586 human genbank 54_36p +1 reviewed missense c.138 p.E46D 0.904 NULL PatternScan_TNFR_NGFR_1 - no_errors SLC37A1 54020 genome.wustl.edu 36 21 42857886 42857886 + Splice_Site SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 21 42857886 42857886 G A SNP SLC37A1 NM_018964 human genbank 54_36p +1 reviewed splice_site c.1136-1 e13-1 1.000 - - - no_errors KIAA0240 23506 genome.wustl.edu 36 6 42904552 42904552 + Missense_Mutation SNP T T C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 6 42904552 42904552 T C SNP KIAA0240 NM_015349 human genbank 54_36p +1 validated missense c.503 p.V168A 1.000 NULL NULL - no_errors ABCG8 64241 genome.wustl.edu 36 2 43933428 43933428 + Missense_Mutation SNP T T C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 2 43933428 43933428 T C SNP ABCG8 NM_022437 human genbank 54_36p +1 reviewed missense c.881 p.L294S 0.936 superfamily_P-loop containing nucleoside triphosphate hydrolases superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane - no_errors FCGBP 8857 genome.wustl.edu 36 19 45049530 45049530 + Missense_Mutation SNP C C A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 19 45049530 45049530 C A SNP FCGBP NM_003890 human genbank 54_36p -1 validated missense c.15623 p.C5208F 0.031 HMMPfam_TIL_assoc,HMMSmart_FOLN HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC - no_errors ADNP 23394 genome.wustl.edu 36 20 48943775 48943775 + Missense_Mutation SNP C C G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 20 48943775 48943775 C G SNP ADNP NM_015339 human genbank 54_36p -1 reviewed missense c.883 p.V295L 0.970 NULL PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox - no_errors DDC 1644 genome.wustl.edu 36 7 50579173 50579173 + Silent SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 7 50579173 50579173 G A SNP DDC NM_000790 human genbank 54_36p -1 reviewed silent c.105 p.P35 0.165 superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC - no_errors MPO 4353 genome.wustl.edu 36 17 53712337 53712337 + Missense_Mutation SNP T T G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 17 53712337 53712337 T G SNP MPO NM_000250 human genbank 54_36p -1 reviewed missense c.286 p.M96L 0.995 NULL superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1 - no_errors CPT1C 126129 genome.wustl.edu 36 19 54899825 54899825 + Missense_Mutation SNP C C T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 19 54899825 54899825 C T SNP CPT1C NM_152359 human genbank 54_36p +1 provisional missense c.740 p.P247L 0.971 superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2 - no_errors RTN4RL2 349667 genome.wustl.edu 36 11 56991758 56991758 + Silent SNP G G T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 11 56991758 56991758 G T SNP RTN4RL2 NM_178570 human genbank 54_36p +1 provisional silent c.132 p.V44 0.996 superfamily_SSF52058,HMMSmart_LRRNT superfamily_SSF52058,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT - no_errors DDB1 1642 genome.wustl.edu 36 11 60840402 60840402 + Silent SNP T T C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 11 60840402 60840402 T C SNP DDB1 NM_001923 human genbank 54_36p -1 validated silent c.1341 p.E447 0.995 NULL HMMPfam_CPSF_A - no_errors PLEKHG3 26030 genome.wustl.edu 36 14 64269300 64269300 + Nonsense_Mutation SNP G G T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 14 64269300 64269300 G T SNP PLEKHG3 NM_015549 human genbank 54_36p +1 validated nonsense c.1105 p.E369* 1.000 NULL superfamily_DH-domain,HMMPfam_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH - no_errors CATSPER1 117144 genome.wustl.edu 36 11 65549796 65549796 + Missense_Mutation SNP G G C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 11 65549796 65549796 G C SNP CATSPER1 NM_053054 human genbank 54_36p -1 reviewed missense c.631 p.Q211E 0.000 superfamily_Voltage-gated potassium channels superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans - no_errors LOC100129267 0 genome.wustl.edu 36 10 65600039 65600039 + RNA SNP G G T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 10 65600039 65600039 G T SNP LOC100129267 XR_037245 human genbank 54_36p -1 model rna NULL NULL 0.053 - - - pseudogene SIPA1L1 26037 genome.wustl.edu 36 14 71275621 71275621 + Missense_Mutation SNP A A T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 14 71275621 71275621 A T SNP SIPA1L1 NM_015556 human genbank 54_36p +1 provisional missense c.5405 p.D1802V 1.000 NULL superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228 - no_errors UBE2O 63893 genome.wustl.edu 36 17 71907847 71907847 + Missense_Mutation SNP C C A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 17 71907847 71907847 C A SNP UBE2O NM_022066 human genbank 54_36p -1 validated missense c.1131 p.Q377H 1.000 NULL PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBQ-conjugat/RWD-like,HMMSmart_UBCc,HMMPfam_UQ_con - no_errors RBM25 58517 genome.wustl.edu 36 14 72639673 72639673 + Silent SNP C C G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 14 72639673 72639673 C G SNP RBM25 NM_021239 human genbank 54_36p +1 validated silent c.888 p.G296 1.000 superfamily_RNA-binding domain RBD superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI - no_errors MESDC2 23184 genome.wustl.edu 36 15 79061542 79061542 + Missense_Mutation SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 15 79061542 79061542 G A SNP MESDC2 NM_015154 human genbank 54_36p -1 validated missense c.250 p.H84Y 1.000 HMMPfam_Mesd HMMPfam_Mesd - no_errors BCMO1 53630 genome.wustl.edu 36 16 79878421 79878421 + Silent SNP C C G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 16 79878421 79878421 C G SNP BCMO1 NM_017429 human genbank 54_36p +1 reviewed silent c.1323 p.L441 0.725 HMMPfam_RPE65 HMMPfam_RPE65 - no_errors FLRT2 23768 genome.wustl.edu 36 14 85158659 85158659 + Missense_Mutation SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 14 85158659 85158659 G A SNP FLRT2 NM_013231 human genbank 54_36p +1 reviewed missense c.1048 p.V350I 0.997 superfamily_SSF52058,HMMSmart_LRRCT,HMMPfam_LRRCT superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like - no_errors PPM2C 54704 genome.wustl.edu 36 8 95003893 95003893 + Missense_Mutation SNP G G C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 8 95003893 95003893 G C SNP PPM2C NM_018444 human genbank 54_36p +1 reviewed missense c.430 p.D144H 1.000 superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,PatternScan_PP2C superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,PatternScan_PP2C,HMMPfam_PP2C - no_errors LOC650656 650656 genome.wustl.edu 36 9 98021190 98021190 + Missense_Mutation SNP T T C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 9 98021190 98021190 T C SNP LOC650656 XM_001717913 human genbank 54_36p +1 model missense c.95 p.L32P 0.014 NULL NULL - no_errors CTHRC1 115908 genome.wustl.edu 36 8 104453179 104453179 + Missense_Mutation SNP C C G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 8 104453179 104453179 C G SNP CTHRC1 NM_138455 human genbank 54_36p +1 provisional missense c.119 p.A40G 0.882 NULL HMMPfam_Collagen - no_errors CNNM2 54805 genome.wustl.edu 36 10 104669490 104669490 + Silent SNP C C T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 10 104669490 104669490 C T SNP CNNM2 NM_017649 human genbank 54_36p +1 validated silent c.1263 p.T421 0.996 HMMPfam_DUF21 HMMPfam_DUF21,HMMPfam_CBS - no_errors CXorf41 139212 genome.wustl.edu 36 X 106352657 106352657 + Missense_Mutation SNP T T C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 X 106352657 106352657 T C SNP CXorf41 NM_173494 human genbank 54_36p +1 predicted missense c.359 p.V120A 1.000 NULL NULL - no_errors LOC100128086 0 genome.wustl.edu 36 9 108918866 108918866 + RNA SNP C C G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 9 108918866 108918866 C G SNP LOC100128086 XR_039419 human genbank 54_36p +1 model rna NULL NULL 0.005 - - - pseudogene CDC40 51362 genome.wustl.edu 36 6 110608462 110608462 + Missense_Mutation SNP C C A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 6 110608462 110608462 C A SNP CDC40 NM_015891 human genbank 54_36p +1 reviewed missense c.122 p.T41N 0.988 NULL superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1 - no_errors ATP11A 23250 genome.wustl.edu 36 13 112529089 112529089 + Silent SNP C C A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 13 112529089 112529089 C A SNP ATP11A NM_032189 human genbank 54_36p +1 reviewed silent c.1104 p.V368 0.996 superfamily_Calcium ATPase transmembrane domain M superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N - no_errors ZNF259 8882 genome.wustl.edu 36 11 116160330 116160330 + Nonsense_Mutation SNP C C A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 11 116160330 116160330 C A SNP ZNF259 NM_003904 human genbank 54_36p -1 provisional nonsense c.865 p.E289* 1.000 HMMPfam_zf-ZPR1,HMMSmart_Zpr1 HMMPfam_zf-ZPR1,HMMSmart_Zpr1 - no_errors DSCAML1 57453 genome.wustl.edu 36 11 116807554 116807554 + Silent SNP G G T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 11 116807554 116807554 G T SNP DSCAML1 NM_020693 human genbank 54_36p -1 provisional silent c.5460 p.R1820 0.986 NULL superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3 - no_errors SLC25A43 203427 genome.wustl.edu 36 X 118428191 118428191 + Silent SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 X 118428191 118428191 G A SNP SLC25A43 NM_145305 human genbank 54_36p +1 provisional silent c.528 p.P176 0.860 superfamily_Mitochondrial carrier,HMMPfam_Mito_carr superfamily_Mitochondrial carrier,HMMPfam_Mito_carr - no_errors HIP1R 9026 genome.wustl.edu 36 12 121910655 121910655 + Missense_Mutation SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 12 121910655 121910655 G A SNP HIP1R NM_003959 human genbank 54_36p +1 validated missense c.2504 p.R835Q 1.000 superfamily_SSF109885,HMMSmart_ILWEQ,HMMPfam_I_LWEQ HMMPfam_ANTH,superfamily_ENTH_VHS,HMMSmart_ENTH,superfamily_SSF109885,HMMSmart_ILWEQ,HMMPfam_I_LWEQ - no_errors C11orf63 79864 genome.wustl.edu 36 11 122261875 122261875 + Missense_Mutation SNP T T G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 11 122261875 122261875 T G SNP C11orf63 NM_024806 human genbank 54_36p +1 validated missense c.108 p.H36Q 0.002 NULL NULL - no_errors CASR 846 genome.wustl.edu 36 3 123463592 123463592 + Missense_Mutation SNP G G C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 3 123463592 123463592 G C SNP CASR NM_000388 human genbank 54_36p +1 reviewed missense c.1020 p.R340S 0.998 superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3 - no_errors PANX3 116337 genome.wustl.edu 36 11 123992488 123992488 + Missense_Mutation SNP A A T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 11 123992488 123992488 A T SNP PANX3 NM_052959 human genbank 54_36p +1 reviewed missense c.433 p.S145C 1.000 NULL NULL - no_errors RICS 9743 genome.wustl.edu 36 11 128344581 128344581 + Nonsense_Mutation SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 11 128344581 128344581 G A SNP RICS NM_014715 human genbank 54_36p -1 validated nonsense c.4648 p.Q1550* 0.728 NULL superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP - no_errors CRAT 1384 genome.wustl.edu 36 9 130909994 130909994 + Missense_Mutation SNP C C T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 9 130909994 130909994 C T SNP CRAT NM_000755 human genbank 54_36p -1 reviewed missense c.211 p.D71N 1.000 superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2 - no_errors USP26 83844 genome.wustl.edu 36 X 131989818 131989818 + Nonsense_Mutation SNP T T A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 X 131989818 131989818 T A SNP USP26 NM_031907 human genbank 54_36p -1 reviewed nonsense c.97 p.K33* 0.002 NULL superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2 - no_errors CXorf19 0 genome.wustl.edu 36 X 138272020 138272020 + Silent SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 X 138272020 138272020 G A SNP CXorf19 ENST00000309296 human ensembl 54_36p +1 known silent c.96 p.L32 0.951 HMMPfam_SNURF HMMPfam_SNURF - no_stop_codon PSD2 84249 genome.wustl.edu 36 5 139173966 139173966 + Silent SNP A A T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 5 139173966 139173966 A T SNP PSD2 NM_032289 human genbank 54_36p +1 provisional silent c.849 p.S283 0.969 HMMSmart_SM00222,HMMPfam_Sec7 HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like - no_errors PCDHB1 29930 genome.wustl.edu 36 5 140412895 140412895 + Silent SNP C C G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 5 140412895 140412895 C G SNP PCDHB1 NM_013340 human genbank 54_36p +1 reviewed silent c.1656 p.V552 0.266 superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1 HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin - no_errors FAT2 2196 genome.wustl.edu 36 5 150867315 150867315 + Missense_Mutation SNP G G T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 5 150867315 150867315 G T SNP FAT2 NM_001447 human genbank 54_36p -1 reviewed missense c.12110 p.P4037H 0.948 superfamily_EGF/Laminin superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2 - no_errors NPR1 4881 genome.wustl.edu 36 1 151918617 151918617 + Missense_Mutation SNP C C G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 1 151918617 151918617 C G SNP NPR1 NM_000906 human genbank 54_36p +1 validated missense c.409 p.L137V 1.000 superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_ANF_RECEPTORS,HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1 - no_errors FBXW7 55294 genome.wustl.edu 36 4 153478406 153478406 + Missense_Mutation SNP C C G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 4 153478406 153478406 C G SNP FBXW7 NM_033632 human genbank 54_36p -1 reviewed missense c.859 p.E287Q 1.000 superfamily_WD40 repeat-like,superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256 superfamily_WD40 repeat-like,superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1 - no_errors KIAA0907 22889 genome.wustl.edu 36 1 154162065 154162065 + Missense_Mutation SNP G G C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 1 154162065 154162065 G C SNP KIAA0907 NM_014949 human genbank 54_36p -1 predicted missense c.875 p.P292R 1.000 superfamily_Eukaryotic type KH-domain (KH-domain type I) superfamily_Eukaryotic type KH-domain (KH-domain type I) - no_errors CD302 9936 genome.wustl.edu 36 2 160344931 160344931 + Silent SNP C C T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 2 160344931 160344931 C T SNP CD302 NM_014880 human genbank 54_36p -1 validated silent c.300 p.A100 0.178 superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C - no_errors GTF3C3 9330 genome.wustl.edu 36 2 197362223 197362223 + Missense_Mutation SNP C C A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 2 197362223 197362223 C A SNP GTF3C3 NM_012086 human genbank 54_36p -1 provisional missense c.843 p.L281F 0.998 superfamily_Protein prenylyltransferase,HMMSmart_SM00028 HMMSmart_SM00028,superfamily_Protein prenylyltransferase,HMMPfam_TPR_2,superfamily_TPR-like,HMMPfam_TPR_1 - no_errors ZNF281 23528 genome.wustl.edu 36 1 198645357 198645357 + Missense_Mutation SNP C C G novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 1 198645357 198645357 C G SNP ZNF281 NM_012482 human genbank 54_36p -1 provisional missense c.100 p.G34R 0.947 NULL superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors RAPH1 65059 genome.wustl.edu 36 2 204013113 204013113 + Silent SNP C C T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 2 204013113 204013113 C T SNP RAPH1 NM_213589 human genbank 54_36p -1 validated silent c.3045 p.K1015 0.998 NULL HMMSmart_SM00314,HMMPfam_RA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233 - no_errors CTLA4 1493 genome.wustl.edu 36 2 204444406 204444406 + Missense_Mutation SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 2 204444406 204444406 G A SNP CTLA4 NM_005214 human genbank 54_36p +1 reviewed missense c.518 p.G173E 0.912 NULL superfamily_SSF48726,HMMSmart_IGv,HMMPfam_V-set - no_errors BATF3 55509 genome.wustl.edu 36 1 210926791 210926791 + Missense_Mutation SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 1 210926791 210926791 G A SNP BATF3 NM_018664 human genbank 54_36p -1 reviewed missense c.349 p.R117W 0.279 NULL HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC - no_errors ERBB4 2066 genome.wustl.edu 36 2 211959844 211959844 + Missense_Mutation SNP T T C novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 2 211959844 211959844 T C SNP ERBB4 NM_005235 human genbank 54_36p -1 reviewed missense c.3460 p.M1154V 0.997 NULL superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMSmart_SM00261,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_YLP - no_errors LOC643454 643454 genome.wustl.edu 36 1 212722689 212722689 + RNA SNP C C T novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 1 212722689 212722689 C T SNP LOC643454 XR_042294 human genbank 54_36p -1 model rna NULL NULL 0.972 - - - pseudogene PSEN2 5664 genome.wustl.edu 36 1 225146072 225146072 + Missense_Mutation SNP G G A novel unknown TCGA-36-2539-01A-01D-1526-09 TCGA-36-2539-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df50e3ca-95af-4da4-a694-95572185a36a f97d6470-9722-4ce9-8fa5-d7e120e125e6 1 225146072 225146072 G A SNP PSEN2 NM_000447 human genbank 54_36p +1 reviewed missense c.976 p.D326N 1.000 HMMPfam_Presenilin,HMMSmart_SM00730 HMMPfam_Presenilin,HMMSmart_SM00730 - no_errors