Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error MT-ATP6 4508 genome.wustl.edu 36 MT 8866 8866 + Silent SNP G A A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f MT 8866 8866 G A SNP MT-ATP6 ENST00000361899 human ensembl 54_36p +1 known silent c.339 p.V113 NULL HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A,PatternScan_ATPASE_A - no_errors MT-ND3 4537 genome.wustl.edu 36 MT 10099 10099 + Missense_Mutation SNP G G A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f MT 10099 10099 G A SNP MT-ND3 ENST00000361227 human ensembl 54_36p +1 known missense c.40 p.A14T NULL HMMPfam_Oxidored_q4 HMMPfam_Oxidored_q4 - no_stop_codon:bad_bp_length_for_coding_region MT-ND3 4537 genome.wustl.edu 36 MT 10316 10316 + Missense_Mutation SNP T T C novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f MT 10316 10316 T C SNP MT-ND3 ENST00000361227 human ensembl 54_36p +1 known missense c.257 p.L86P NULL HMMPfam_Oxidored_q4 HMMPfam_Oxidored_q4 - no_stop_codon:bad_bp_length_for_coding_region MT-ND4 4538 genome.wustl.edu 36 MT 11915 11915 + Silent SNP G A A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f MT 11915 11915 G A SNP MT-ND4 ENST00000361381 human ensembl 54_36p +1 known silent c.1155 p.T385 NULL HMMPfam_Oxidored_q1 HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1 - no_stop_codon:bad_bp_length_for_coding_region MYOM2 9172 genome.wustl.edu 36 8 1987794 1987794 + Missense_Mutation SNP G G T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 8 1987794 1987794 G T SNP MYOM2 NM_003970 human genbank 54_36p +1 validated missense c.219 p.K73N 0.002 NULL superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMPfam_ig,HMMSmart_IGc2 - no_errors TMC2 117532 genome.wustl.edu 36 20 2545941 2545941 + Missense_Mutation SNP G G A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 20 2545941 2545941 G A SNP TMC2 NM_080751 human genbank 54_36p +1 validated missense c.2164 p.D722N 1.000 NULL HMMPfam_TMC - no_errors TP53 7157 genome.wustl.edu 36 17 7519095 7519095 + Splice_Site SNP C A A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 17 7519095 7519095 C A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed splice_site c.559+1 e4+1 0.998 - - - no_errors MYH2 4620 genome.wustl.edu 36 17 10373675 10373675 + Silent SNP C C T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 17 10373675 10373675 C T SNP MYH2 NM_001100112 human genbank 54_36p -1 validated silent c.3048 p.L1016 0.999 NULL HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1 - no_errors TEAD1 7003 genome.wustl.edu 36 11 12742377 12742377 + Missense_Mutation SNP G G A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 11 12742377 12742377 G A SNP TEAD1 ENST00000334310 human ensembl 54_36p +1 known missense c.22 p.G8S 1.000 HMMPfam_TEA HMMPfam_TEA,HMMSmart_SM00426,PatternScan_TEA_1 - no_start_codon TEKT3 64518 genome.wustl.edu 36 17 15175435 15175435 + Missense_Mutation SNP C C T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 17 15175435 15175435 C T SNP TEKT3 NM_031898 human genbank 54_36p -1 reviewed missense c.193 p.V65M 0.509 NULL HMMPfam_Tektin - no_errors SPEN 23013 genome.wustl.edu 36 1 16131305 16131305 + Missense_Mutation SNP C C T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 1 16131305 16131305 C T SNP SPEN NM_015001 human genbank 54_36p +1 reviewed missense c.5983 p.P1995S 0.003 NULL superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC - no_errors PPM1F 9647 genome.wustl.edu 36 22 20607487 20607487 + Missense_Mutation SNP G A A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 22 20607487 20607487 G A SNP PPM1F NM_014634 human genbank 54_36p -1 reviewed missense c.1343 p.T448I 0.039 NULL superfamily_PP2C-related,HMMSmart_PP2Cc,HMMPfam_PP2C,HMMSmart_PP2C_SIG,PatternScan_PP2C - no_errors ARMC4 55130 genome.wustl.edu 36 10 28269693 28269693 + Silent SNP C C T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 10 28269693 28269693 C T SNP ARMC4 NM_018076 human genbank 54_36p -1 validated silent c.1791 p.S597 0.000 superfamily_ARM repeat,HMMSmart_SM00185 superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm - no_errors RNF185 91445 genome.wustl.edu 36 22 29930476 29930476 + Silent SNP T T A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 22 29930476 29930476 T A SNP RNF185 NM_152267 human genbank 54_36p +1 validated silent c.483 p.A161 0.998 NULL superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1 - no_errors USPL1 10208 genome.wustl.edu 36 13 30103140 30103140 + Missense_Mutation SNP G G A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 13 30103140 30103140 G A SNP USPL1 NM_005800 human genbank 54_36p +1 validated missense c.397 p.G133S 0.001 NULL NULL - no_errors CSMD2 114784 genome.wustl.edu 36 1 33763088 33763088 + Silent SNP G G A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 1 33763088 33763088 G A SNP CSMD2 NM_052896 human genbank 54_36p -1 validated silent c.9945 p.G3315 0.452 NULL superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC - no_errors APIP 51074 genome.wustl.edu 36 11 34868744 34868744 + Silent SNP T T A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 11 34868744 34868744 T A SNP APIP ENST00000395786 human ensembl 54_36p -1 known silent c.9 p.G3 0.005 NULL superfamily_AraD-like aldolase/epimerase,HMMPfam_Aldolase_II - no_errors KRT10 3858 genome.wustl.edu 36 17 36232086 36232086 + Missense_Mutation SNP C G G novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 17 36232086 36232086 C G SNP KRT10 NM_000421 human genbank 54_36p -1 reviewed missense c.278 p.S93T 0.492 NULL HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF - no_errors CSF3R 1441 genome.wustl.edu 36 1 36710742 36710742 + Missense_Mutation SNP C C T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 1 36710742 36710742 C T SNP CSF3R NM_156039 human genbank 54_36p -1 reviewed missense c.806 p.R269H 0.998 superfamily_FN_III-like,HMMSmart_FN3 HMMPfam_Lep_receptor_Ig,superfamily_FN_III-like,HMMSmart_FN3,PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3 - no_errors FREM2 341640 genome.wustl.edu 36 13 38163898 38163898 + Missense_Mutation SNP G G A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 13 38163898 38163898 G A SNP FREM2 NM_207361 human genbank 54_36p +1 reviewed missense c.4417 p.D1473N 0.997 NULL HMMSmart_SM00237,HMMPfam_Calx-beta - no_errors PHF8 23133 genome.wustl.edu 36 X 54006017 54006017 + Missense_Mutation SNP G G T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f X 54006017 54006017 G T SNP PHF8 NM_015107 human genbank 54_36p -1 validated missense c.2524 p.P842T 1.000 NULL superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_EGF_2,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC - no_errors GYS1 2997 genome.wustl.edu 36 19 54164672 54164672 + Silent SNP C C A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 19 54164672 54164672 C A SNP GYS1 NM_002103 human genbank 54_36p -1 provisional silent c.1899 p.G633 0.998 HMMPfam_Glycogen_syn HMMPfam_Glycogen_syn,superfamily_SSF53756 - no_errors POLR2C 5432 genome.wustl.edu 36 16 56062470 56062470 + Missense_Mutation SNP C C G novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 16 56062470 56062470 C G SNP POLR2C NM_032940 human genbank 54_36p +1 reviewed missense c.766 p.L256V 1.000 superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662 superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662,PatternScan_RNA_POL_D_30KD,superfamily_Insert subdomain of RNA polymerase alpha subunit,HMMPfam_RNA_pol_A_bac,PatternScan_EF_HAND_1 - no_errors KLK8 11202 genome.wustl.edu 36 19 56195313 56195313 + Missense_Mutation SNP G G A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 19 56195313 56195313 G A SNP KLK8 NM_144505 human genbank 54_36p -1 reviewed missense c.379 p.R127C 0.995 superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER - no_errors RNF111 54778 genome.wustl.edu 36 15 57131923 57131923 + Splice_Site SNP G G T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 15 57131923 57131923 G T SNP RNF111 NM_017610 human genbank 54_36p +1 reviewed splice_site c.1007+1 e2+1 1.000 - - - no_errors FLJ38723 255180 genome.wustl.edu 36 15 60332141 60332141 + RNA SNP A A G novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 15 60332141 60332141 A G SNP FLJ38723 XR_041381 human genbank 54_36p -1 model rna NULL NULL 0.947 - - - no_errors TMEM109 79073 genome.wustl.edu 36 11 60443836 60443836 + Missense_Mutation SNP T T G novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 11 60443836 60443836 T G SNP TMEM109 NM_024092 human genbank 54_36p +1 validated missense c.95 p.L32W 0.000 NULL NULL - no_errors ZNF530 348327 genome.wustl.edu 36 19 62809785 62809785 + Silent SNP T T C novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 19 62809785 62809785 T C SNP ZNF530 NM_020880 human genbank 54_36p +1 validated silent c.1080 p.F360 0.656 superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors ABCA9 10350 genome.wustl.edu 36 17 64536303 64536303 + Missense_Mutation SNP T C C novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 17 64536303 64536303 T C SNP ABCA9 NM_080283 human genbank 54_36p -1 reviewed missense c.1583 p.N528S 0.972 superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran - no_errors SGTB 54557 genome.wustl.edu 36 5 65001846 65001846 + Missense_Mutation SNP C T T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 5 65001846 65001846 C T SNP SGTB NM_019072 human genbank 54_36p -1 validated missense c.898 p.A300T 0.997 NULL superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR - no_errors CTNNA3 29119 genome.wustl.edu 36 10 67499117 67499117 + Missense_Mutation SNP G G T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 10 67499117 67499117 G T SNP CTNNA3 NM_013266 human genbank 54_36p -1 validated missense c.2114 p.A705D 1.000 HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin - no_errors LOC441442 0 genome.wustl.edu 36 9 67847195 67847195 + RNA SNP G A A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 9 67847195 67847195 G A SNP LOC441442 XR_037084 human genbank 54_36p -1 model rna NULL NULL 0.998 - - - pseudogene NEO1 4756 genome.wustl.edu 36 15 71196012 71196012 + Missense_Mutation SNP T C C novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 15 71196012 71196012 T C SNP NEO1 NM_002499 human genbank 54_36p +1 validated missense c.209 p.V70A 0.989 HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408 PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C - no_errors DBF4 10926 genome.wustl.edu 36 7 87352366 87352366 + Missense_Mutation SNP C C A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 7 87352366 87352366 C A SNP DBF4 NM_006716 human genbank 54_36p +1 validated missense c.356 p.P119H 1.000 NULL HMMPfam_zf-DBF,HMMSmart_SM00586 - no_errors ANKRD11 29123 genome.wustl.edu 36 16 87873664 87873664 + Missense_Mutation SNP G A A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 16 87873664 87873664 G A SNP ANKRD11 NM_013275 human genbank 54_36p -1 validated missense c.6787 p.P2263S 0.000 NULL superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank - no_errors CATSPERB 79820 genome.wustl.edu 36 14 91146594 91146594 + Missense_Mutation SNP G G C novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 14 91146594 91146594 G C SNP CATSPERB NM_024764 human genbank 54_36p -1 validated missense c.2581 p.L861V 0.701 NULL NULL - no_errors GATAD1 57798 genome.wustl.edu 36 7 91916105 91916105 + Missense_Mutation SNP G G A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 7 91916105 91916105 G A SNP GATAD1 NM_021167 human genbank 54_36p +1 validated missense c.353 p.R118K 1.000 NULL superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_GATA - no_errors CNGA3 1261 genome.wustl.edu 36 2 98379770 98379770 + Missense_Mutation SNP C C T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 2 98379770 98379770 C T SNP CNGA3 NM_001298 human genbank 54_36p +1 reviewed missense c.1705 p.R569C 1.000 superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_2 superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2 - no_errors UTP20 27340 genome.wustl.edu 36 12 100247209 100247209 + Missense_Mutation SNP C C T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 12 100247209 100247209 C T SNP UTP20 NM_014503 human genbank 54_36p +1 validated missense c.3268 p.P1090S 1.000 superfamily_ARM repeat superfamily_ARM repeat,HMMPfam_DRIM - no_errors TRPC5 7224 genome.wustl.edu 36 X 110964813 110964813 + Missense_Mutation SNP G G T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f X 110964813 110964813 G T SNP TRPC5 NM_012471 human genbank 54_36p -1 validated missense c.1888 p.L630I 1.000 NULL superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1 - no_errors SLC35F5 80255 genome.wustl.edu 36 2 114193265 114193265 + Missense_Mutation SNP C C T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 2 114193265 114193265 C T SNP SLC35F5 NM_025181 human genbank 54_36p -1 provisional missense c.1432 p.D478N 1.000 NULL superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_DUF6 - no_errors CD3G 917 genome.wustl.edu 36 11 117725793 117725793 + Nonsense_Mutation SNP A A T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 11 117725793 117725793 A T SNP CD3G NM_000073 human genbank 54_36p +1 reviewed nonsense c.205 p.K69* 0.000 superfamily_Immunoglobulin,HMMSmart_SM00408 superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_ITAM,HMMSmart_SM00077 - no_errors MAN1A2 10905 genome.wustl.edu 36 1 117840976 117840976 + Silent SNP G G T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 1 117840976 117840976 G T SNP MAN1A2 NM_006699 human genbank 54_36p +1 validated silent c.1353 p.G451 0.508 superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47 superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47 - no_errors HPD 3242 genome.wustl.edu 36 12 120766117 120766117 + Missense_Mutation SNP C C T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 12 120766117 120766117 C T SNP HPD NM_002150 human genbank 54_36p -1 validated missense c.836 p.R279H 0.994 superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase,HMMPfam_Glyoxalase superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase,HMMPfam_Glyoxalase - no_errors PTPRZ1 5803 genome.wustl.edu 36 7 121455889 121455889 + Missense_Mutation SNP C C G novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 7 121455889 121455889 C G SNP PTPRZ1 NM_002851 human genbank 54_36p +1 reviewed missense c.5036 p.P1679R 1.000 NULL superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1 - no_errors TTC16 158248 genome.wustl.edu 36 9 129529169 129529169 + Missense_Mutation SNP G G C novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 9 129529169 129529169 G C SNP TTC16 NM_144965 human genbank 54_36p +1 provisional missense c.1525 p.V509L 0.000 NULL superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR - no_errors PTPN18 26469 genome.wustl.edu 36 2 130833492 130833492 + Missense_Mutation SNP C C A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 2 130833492 130833492 C A SNP PTPN18 NM_014369 human genbank 54_36p +1 reviewed missense c.332 p.T111N 0.912 HMMSmart_PTPc,superfamily_SSF52799,HMMPfam_Y_phosphatase HMMSmart_PTPc,superfamily_SSF52799,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1 - no_errors SLITRK4 139065 genome.wustl.edu 36 X 142546262 142546262 + Missense_Mutation SNP T T C novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f X 142546262 142546262 T C SNP SLITRK4 NM_173078 human genbank 54_36p -1 validated missense c.329 p.K110R 1.000 superfamily_L domain-like,HMMSmart_SM00369 superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRNT - no_errors MFSD3 113655 genome.wustl.edu 36 8 145705964 145705964 + Missense_Mutation SNP C C T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 8 145705964 145705964 C T SNP MFSD3 NM_138431 human genbank 54_36p +1 provisional missense c.440 p.A147V 0.252 superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1 superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1 - no_errors NPY5R 4889 genome.wustl.edu 36 4 164491799 164491799 + Silent SNP C T T novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 4 164491799 164491799 C T SNP NPY5R NM_006174 human genbank 54_36p +1 provisional silent c.924 p.H308 0.000 superfamily_SSF81321,HMMPfam_7tm_1 PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1 - no_errors KIF21B 23046 genome.wustl.edu 36 1 199245168 199245168 + Missense_Mutation SNP G G A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 1 199245168 199245168 G A SNP KIF21B NM_017596 human genbank 54_36p -1 provisional missense c.113 p.P38L 1.000 HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1 - no_errors EXOC8 149371 genome.wustl.edu 36 1 229538776 229538776 + Missense_Mutation SNP G G A novel unknown TCGA-36-2548-01A-01D-1526-09 TCGA-36-2548-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f0526795-f4e2-4362-8fd8-58f5b9fc6ee7 4f689ff8-b0ef-4495-af25-6f460f515b4f 1 229538776 229538776 G A SNP EXOC8 NM_175876 human genbank 54_36p -1 validated missense c.1339 p.R447C 1.000 NULL HMMPfam_Vps51,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233 - no_errors