Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error PALM 5064 genome.wustl.edu 36 19 697627 697627 + Missense_Mutation SNP C T T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 19 697627 697627 C T SNP PALM NM_002579 human genbank 54_36p +1 reviewed missense c.977 p.A326V 0.998 HMMPfam_Paralemmin HMMPfam_Paralemmin - no_errors CORO7 79585 genome.wustl.edu 36 16 4403380 4403380 + Silent SNP T A A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 16 4403380 4403380 T A SNP CORO7 NM_024535 human genbank 54_36p -1 validated silent c.87 p.G29 0.263 NULL superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMPfam_DUF1900,PatternScan_WD_REPEATS_1 - no_errors CHD4 1108 genome.wustl.edu 36 12 6571844 6571844 + Missense_Mutation SNP C C T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 12 6571844 6571844 C T SNP CHD4 NM_001273 human genbank 54_36p -1 reviewed missense c.2924 p.R975H 1.000 HMMPfam_SNF2_N HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,PatternScan_CHROMO_1,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2 - no_errors COL28A1 340267 genome.wustl.edu 36 7 7447010 7447010 + Missense_Mutation SNP T T G novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 7 7447010 7447010 T G SNP COL28A1 NM_001037763 human genbank 54_36p -1 validated missense c.1658 p.E553A 0.980 HMMPfam_Collagen superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Collagen,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1 - no_errors TP53 7157 genome.wustl.edu 36 17 7518296 7518296 + Missense_Mutation SNP A T T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 17 7518296 7518296 A T SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.710 p.M237K 1.000 HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53 HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain - no_errors CLCN6 1185 genome.wustl.edu 36 1 11819677 11819677 + Missense_Mutation SNP G G A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 1 11819677 11819677 G A SNP CLCN6 NM_001286 human genbank 54_36p +1 reviewed missense c.2015 p.R672H 1.000 HMMPfam_CBS superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116 - no_errors DSTN 11034 genome.wustl.edu 36 20 17529545 17529545 + Silent SNP T T C novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 20 17529545 17529545 T C SNP DSTN NM_006870 human genbank 54_36p +1 reviewed silent c.166 p.L56 1.000 superfamily_Actin depolymerizing proteins,HMMSmart_SM00102,HMMPfam_Cofilin_ADF superfamily_Actin depolymerizing proteins,HMMSmart_SM00102,HMMPfam_Cofilin_ADF - no_errors IGSF22 283284 genome.wustl.edu 36 11 18694949 18694949 + Missense_Mutation SNP G G A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 11 18694949 18694949 G A SNP IGSF22 NM_173588 human genbank 54_36p -1 validated missense c.1148 p.T383M 0.993 superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3 - no_errors DKFZP547L112 81787 genome.wustl.edu 36 15 19264801 19264801 + RNA SNP C T T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 15 19264801 19264801 C T SNP DKFZP547L112 XR_041953 human genbank 54_36p +1 model rna NULL NULL 0.000 - - - no_errors KIF17 57576 genome.wustl.edu 36 1 20914578 20914578 + Missense_Mutation SNP C C T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 1 20914578 20914578 C T SNP KIF17 NM_020816 human genbank 54_36p -1 validated missense c.373 p.V125I 0.999 HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1 - no_errors ENSG00000211647 0 genome.wustl.edu 36 22 21037543 21037543 + Missense_Mutation SNP G G A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 22 21037543 21037543 G A SNP ENSG00000211647 ENST00000390293 human ensembl 54_36p +1 known missense c.131 p.R44H 0.845 superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406 superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406 - no_stop_codon POLA1 5422 genome.wustl.edu 36 X 24676988 24676988 + Silent SNP C C T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 X 24676988 24676988 C T SNP POLA1 NM_016937 human genbank 54_36p +1 validated silent c.2904 p.Y968 0.979 HMMSmart_POLBc,superfamily_SSF56672,HMMPfam_DNA_pol_B superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_SSF56672,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B,HMMPfam_zf-DNA_Pol,superfamily_SSF90234 - no_errors uc002dqb.1 0 genome.wustl.edu 36 16 28414946 28414946 + Missense_Mutation SNP G G C novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 16 28414946 28414946 G C SNP uc002dqb.1 ENST00000328423 human ensembl 54_36p +1 known missense c.1056 p.E352D 0.927 NULL NULL - no_errors uc003nmb.1 0 genome.wustl.edu 36 6 29338591 29338591 + Silent SNP A A G novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 6 29338591 29338591 A G SNP uc003nmb.1 ENST00000377164 human ensembl 54_36p -1 known silent c.747 p.I249 0.046 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 - no_errors EPC1 80314 genome.wustl.edu 36 10 32620221 32620221 + Missense_Mutation SNP G G C novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 10 32620221 32620221 G C SNP EPC1 NM_025209 human genbank 54_36p -1 provisional missense c.851 p.S284C 1.000 NULL HMMPfam_EPL1,HMMPfam_E_Pc_C - no_errors DAXX 1616 genome.wustl.edu 36 6 33396635 33396635 + Nonsense_Mutation SNP G G A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 6 33396635 33396635 G A SNP DAXX NM_001350 human genbank 54_36p -1 reviewed nonsense c.895 p.R299* 0.998 HMMPfam_Daxx HMMPfam_Daxx - no_errors NPC1L1 29881 genome.wustl.edu 36 7 44545458 44545458 + Missense_Mutation SNP T T C novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 7 44545458 44545458 T C SNP NPC1L1 NM_013389 human genbank 54_36p -1 validated missense c.1063 p.I355V 0.009 NULL HMMPfam_Patched,superfamily_SSF82866 - no_errors ZNF574 64763 genome.wustl.edu 36 19 47276259 47276259 + Missense_Mutation SNP G G C novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 19 47276259 47276259 G C SNP ZNF574 NM_022752 human genbank 54_36p +1 validated missense c.1661 p.G554A 1.000 superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 - no_errors FSHR 2492 genome.wustl.edu 36 2 49098164 49098164 + Missense_Mutation SNP C C G novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 2 49098164 49098164 C G SNP FSHR NM_000145 human genbank 54_36p -1 reviewed missense c.342 p.E114D 0.979 superfamily_L domain-like superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors GLS2 27165 genome.wustl.edu 36 12 55154692 55154692 + Missense_Mutation SNP G G A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 12 55154692 55154692 G A SNP GLS2 NM_013267 human genbank 54_36p -1 reviewed missense c.1127 p.T376I 1.000 superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank - no_errors OR5M1 390168 genome.wustl.edu 36 11 56137306 56137306 + Missense_Mutation SNP G G C novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 11 56137306 56137306 G C SNP OR5M1 NM_001004740 human genbank 54_36p -1 provisional missense c.249 p.H83Q 0.000 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors SLC16A7 9194 genome.wustl.edu 36 12 58451373 58451373 + Silent SNP C C T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 12 58451373 58451373 C T SNP SLC16A7 NM_004731 human genbank 54_36p +1 provisional silent c.324 p.S108 0.724 superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1 superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1 - no_errors LILRA4 23547 genome.wustl.edu 36 19 59541246 59541246 + Missense_Mutation SNP C C A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 19 59541246 59541246 C A SNP LILRA4 NM_012276 human genbank 54_36p -1 reviewed missense c.428 p.C143F 0.458 superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig - no_errors PGA3 643834 genome.wustl.edu 36 11 60731618 60731618 + Silent SNP C C T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 11 60731618 60731618 C T SNP PGA3 NM_001079807 human genbank 54_36p +1 validated silent c.411 p.Y137 0.990 superfamily_Acid proteases,HMMPfam_Asp superfamily_Acid proteases,HMMPfam_A1_Propeptide,HMMPfam_Asp,PatternScan_ASP_PROTEASE - no_errors KBTBD8 84541 genome.wustl.edu 36 3 67137261 67137261 + Missense_Mutation SNP G G A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 3 67137261 67137261 G A SNP KBTBD8 NM_032505 human genbank 54_36p +1 provisional missense c.1102 p.A368T 1.000 superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612 superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612 - no_errors UCP3 7352 genome.wustl.edu 36 11 73395020 73395020 + Missense_Mutation SNP C C T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 11 73395020 73395020 C T SNP UCP3 NM_003356 human genbank 54_36p -1 reviewed missense c.179 p.G60D 1.000 superfamily_Mitochondrial carrier,HMMPfam_Mito_carr superfamily_Mitochondrial carrier,HMMPfam_Mito_carr - no_errors LRRTM1 347730 genome.wustl.edu 36 2 80383959 80383959 + Missense_Mutation SNP A A G novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 2 80383959 80383959 A G SNP LRRTM1 NM_178839 human genbank 54_36p -1 validated missense c.497 p.L166P 1.000 superfamily_SSF52058,HMMSmart_LRR_TYP HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP - no_errors MDN1 23195 genome.wustl.edu 36 6 90440915 90440915 + Missense_Mutation SNP G G T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 6 90440915 90440915 G T SNP MDN1 NM_014611 human genbank 54_36p -1 provisional missense c.12876 p.H4292Q 0.920 NULL superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327 - no_errors KIF20B 9585 genome.wustl.edu 36 10 91487458 91487458 + Missense_Mutation SNP G G T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 10 91487458 91487458 G T SNP KIF20B NM_016195 human genbank 54_36p +1 validated missense c.2760 p.K920N 0.499 NULL superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1 - no_errors CYP51A1 1595 genome.wustl.edu 36 7 91584386 91584386 + Missense_Mutation SNP G G A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 7 91584386 91584386 G A SNP CYP51A1 NM_000786 human genbank 54_36p -1 reviewed missense c.1259 p.S420L 1.000 HMMPfam_p450,superfamily_Cytochrome P450 HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_TRYPSIN_HIS,PatternScan_CYTOCHROME_P450 - no_errors DUSP2 1844 genome.wustl.edu 36 2 96174317 96174317 + Silent SNP G T T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 2 96174317 96174317 G T SNP DUSP2 NM_004418 human genbank 54_36p -1 reviewed silent c.420 p.P140 0.879 superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00450 superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00450,HMMPfam_Rhodanese,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1 - no_errors LOC643342 643342 genome.wustl.edu 36 9 97095638 97095638 + RNA SNP C C G novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 9 97095638 97095638 C G SNP LOC643342 XR_016301 human genbank 54_36p +1 model rna NULL NULL 0.002 - - - pseudogene PCDH19 57526 genome.wustl.edu 36 X 99438017 99438017 + Missense_Mutation SNP C C A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 X 99438017 99438017 C A SNP PCDH19 NM_001105243 human genbank 54_36p -1 validated missense c.3220 p.V1074F 0.986 NULL HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin - no_errors DIO3 1735 genome.wustl.edu 36 14 101098130 101098130 + Missense_Mutation SNP C C T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 14 101098130 101098130 C T SNP DIO3 NM_001362 human genbank 54_36p +1 reviewed missense c.466 p.R156C 1.000 HMMPfam_T4_deiodinase HMMPfam_T4_deiodinase - pseudogene DPH5 51611 genome.wustl.edu 36 1 101228765 101228765 + Silent SNP C C T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 1 101228765 101228765 C T SNP DPH5 NM_001077394 human genbank 54_36p -1 reviewed silent c.645 p.E215 1.000 superfamily_Tetrapyrrole methylase HMMPfam_TP_methylase,superfamily_Tetrapyrrole methylase - no_errors ABCA1 19 genome.wustl.edu 36 9 106590587 106590587 + Missense_Mutation SNP T T C novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 9 106590587 106590587 T C SNP ABCA1 NM_005502 human genbank 54_36p -1 reviewed missense c.6010 p.R2004G 0.997 superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1 - no_errors COL4A2 1284 genome.wustl.edu 36 13 109936037 109936037 + Silent SNP A A G novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 13 109936037 109936037 A G SNP COL4A2 NM_001846 human genbank 54_36p +1 reviewed silent c.3060 p.S1020 0.045 HMMPfam_Collagen HMMPfam_Collagen,HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold - no_errors VPS37B 79720 genome.wustl.edu 36 12 121917902 121917902 + Missense_Mutation SNP T T G novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 12 121917902 121917902 T G SNP VPS37B NM_024667 human genbank 54_36p -1 validated missense c.572 p.Y191S 0.998 NULL HMMPfam_Mod_r - no_errors PCDH1 5097 genome.wustl.edu 36 5 141224116 141224116 + Missense_Mutation SNP T C C novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 5 141224116 141224116 T C SNP PCDH1 NM_032420 human genbank 54_36p -1 reviewed missense c.1964 p.N655S 0.993 superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA superfamily_Cadherin,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_GREAB_2,HMMPfam_Protocadherin - no_errors OR2F1 26211 genome.wustl.edu 36 7 143288293 143288293 + Silent SNP C C T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 7 143288293 143288293 C T SNP OR2F1 NM_012369 human genbank 54_36p +1 provisional silent c.297 p.A99 0.096 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors NPY5R 4889 genome.wustl.edu 36 4 164492137 164492137 + Missense_Mutation SNP A A T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 4 164492137 164492137 A T SNP NPY5R NM_006174 human genbank 54_36p +1 provisional missense c.1262 p.N421I 0.999 superfamily_SSF81321,HMMPfam_7tm_1 PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1 - no_errors ASTN1 460 genome.wustl.edu 36 1 175104659 175104659 + Silent SNP C C T novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 1 175104659 175104659 C T SNP ASTN1 NM_004319 human genbank 54_36p -1 validated silent c.3591 p.Q1197 1.000 NULL HMMSmart_EGF,HMMSmart_MACPF,superfamily_FN_III-like,HMMSmart_FN3 - no_errors LOC100132133 0 genome.wustl.edu 36 2 192276516 192276516 + Missense_Mutation SNP C A A novel unknown TCGA-61-1741-01A-02W-0639-09 TCGA-61-1741-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx d688d466-6907-4612-947f-d845b233f8f6 b51b5764-87bc-447e-b99b-dc000e2d1239 2 192276516 192276516 C A SNP LOC100132133 XM_001717052 human genbank 54_36p -1 model missense c.179 p.R60L 0.000 NULL NULL - no_errors