Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ATP6	4508	genome.wustl.edu	36	MT	8822	8822	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	MT	8822	8822	T	C	SNP	MT-ATP6	ENST00000361899	human	ensembl	54_36p	+1	known	missense	c.295	p.S99P	NULL	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A,PatternScan_ATPASE_A	-	no_errors
ENSG00000215615	0	genome.wustl.edu	36	NT_113889	38826	38826	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	NT_113889	38826	38826	G	C	SNP	ENSG00000215615	ENST00000400681	human	ensembl	54_36p	-1	known	missense	c.637	p.P213A	NULL	NULL	HMMPfam_Tektin	-	no_stop_codon
LOC100131675	0	genome.wustl.edu	36	7	201276	201276	+	RNA	SNP	G	A	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	7	201276	201276	G	A	SNP	LOC100131675	XR_037943	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC728613	728613	genome.wustl.edu	36	5	1651162	1651162	+	RNA	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	5	1651162	1651162	C	A	SNP	LOC728613	NR_003713	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.954	-	-	-	pseudogene
C16orf73	254528	genome.wustl.edu	36	16	1829264	1829264	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	16	1829264	1829264	C	A	SNP	C16orf73	NM_152764	human	genbank	54_36p	-1	validated	missense	c.479	p.G160V	1.000	NULL	NULL	-	no_errors
ACTRT2	140625	genome.wustl.edu	36	1	2928268	2928268	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	1	2928268	2928268	A	T	SNP	ACTRT2	NM_080431	human	genbank	54_36p	+1	reviewed	missense	c.158	p.Q53L	0.991	HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268	HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE	-	no_errors
LOC728263	728263	genome.wustl.edu	36	4	3995586	3995586	+	RNA	SNP	C	T	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	4	3995586	3995586	C	T	SNP	LOC728263	XR_015245	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
ENSG00000180913	0	genome.wustl.edu	36	11	6106501	6106501	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	11	6106501	6106501	G	T	SNP	ENSG00000180913	ENST00000316517	human	ensembl	54_36p	+1	known	missense	c.86	p.W29L	0.824	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
POLS	11044	genome.wustl.edu	36	5	6796882	6796882	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	5	6796882	6796882	G	A	SNP	POLS	NM_006999	human	genbank	54_36p	+1	reviewed	missense	c.424	p.D142N	1.000	superfamily_PAP/OAS1 substrate-binding domain	superfamily_Nucleotidyltransferase,HMMPfam_NTP_transf_2,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc	-	no_errors
CHD3	1107	genome.wustl.edu	36	17	7753266	7753266	+	Silent	SNP	C	G	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	17	7753266	7753266	C	G	SNP	CHD3	NM_001005271	human	genbank	54_36p	+1	reviewed	silent	c.5610	p.P1870	1.000	HMMPfam_CHDCT2	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_CHROMO_1,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
TMEM9B	56674	genome.wustl.edu	36	11	8926572	8926572	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	11	8926572	8926572	G	T	SNP	TMEM9B	NM_020644	human	genbank	54_36p	-1	provisional	missense	c.468	p.H156Q	0.999	HMMPfam_Tmemb_9	HMMPfam_Tmemb_9	-	no_errors
USP17	0	genome.wustl.edu	36	4	8970564	8970564	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	4	8970564	8970564	G	A	SNP	USP17	NM_001105662	human	genbank	54_36p	+1	provisional	missense	c.1358	p.R453K	0.015	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	pseudogene
LPIN1	23175	genome.wustl.edu	36	2	11823298	11823298	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	11823298	11823298	C	G	SNP	LPIN1	NM_145693	human	genbank	54_36p	+1	reviewed	silent	c.180	p.S60	1.000	HMMPfam_Lipin_N	HMMPfam_Lipin_N,superfamily_SSF56784,HMMPfam_LNS2,HMMSmart_LNS2	-	no_errors
LOC388514	388514	genome.wustl.edu	36	19	15732065	15732065	+	RNA	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	19	15732065	15732065	C	A	SNP	LOC388514	XR_017598	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.812	-	-	-	no_errors
RPGRIP1	57096	genome.wustl.edu	36	14	20864111	20864111	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	14	20864111	20864111	C	A	SNP	RPGRIP1	NM_020366	human	genbank	54_36p	+1	reviewed	silent	c.2649	p.G883	0.838	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	-	no_errors
MKRN3	7681	genome.wustl.edu	36	15	21362247	21362247	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	15	21362247	21362247	C	T	SNP	MKRN3	NM_005664	human	genbank	54_36p	+1	reviewed	silent	c.225	p.A75	0.000	NULL	HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
CD93	22918	genome.wustl.edu	36	20	23014492	23014492	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	20	23014492	23014492	C	A	SNP	CD93	NM_012072	human	genbank	54_36p	-1	reviewed	missense	c.338	p.G113V	1.000	HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C	PatternScan_C_TYPE_LECTIN_1,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C,HMMSmart_EGF,superfamily_SSF57196,PatternScan_EGF_2,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
ADAM7	8756	genome.wustl.edu	36	8	24402653	24402653	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	8	24402653	24402653	T	C	SNP	ADAM7	NM_003817	human	genbank	54_36p	+1	validated	missense	c.1183	p.F395L	0.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR"	-	no_errors
HIST1H4C	8364	genome.wustl.edu	36	6	26212278	26212278	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	6	26212278	26212278	G	C	SNP	HIST1H4C	NM_003542	human	genbank	54_36p	+1	reviewed	missense	c.124	p.G42R	1.000	superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803	superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803	-	no_errors
RFPL1S	10740	genome.wustl.edu	36	22	28165552	28165552	+	RNA	SNP	G	T	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	22	28165552	28165552	G	T	SNP	RFPL1S	NR_002727	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.002	-	-	-	no_errors
PPP1CB	5500	genome.wustl.edu	36	2	28858210	28858210	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	28858210	28858210	G	T	SNP	PPP1CB	NM_002709	human	genbank	54_36p	+1	reviewed	missense	c.518	p.G173V	1.000	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE	-	no_errors
RNF160	26046	genome.wustl.edu	36	21	29253744	29253744	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	21	29253744	29253744	C	T	SNP	RNF160	NM_015565	human	genbank	54_36p	-1	validated	missense	c.2500	p.A834T	0.678	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_RING/U-box,HMMSmart_SM00744,HMMPfam_zf-C3HC4	-	no_errors
ENSG00000205534	0	genome.wustl.edu	36	16	29484287	29484287	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	16	29484287	29484287	C	A	SNP	ENSG00000205534	ENST00000380594	human	ensembl	54_36p	-1	known	missense	c.286	p.G96C	1.000	NULL	NULL	-	no_errors
ZFP57	346171	genome.wustl.edu	36	6	29749459	29749459	+	Silent	SNP	A	A	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	6	29749459	29749459	A	T	SNP	ZFP57	NM_001109809	human	genbank	54_36p	-1	inferred	silent	c.348	p.T116	0.002	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TAOK2	9344	genome.wustl.edu	36	16	29902022	29902022	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	16	29902022	29902022	C	T	SNP	TAOK2	NM_016151	human	genbank	54_36p	+1	validated	silent	c.1128	p.D376	0.998	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
SFI1	9814	genome.wustl.edu	36	22	30337135	30337135	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	22	30337135	30337135	T	C	SNP	SFI1	NM_001007467	human	genbank	54_36p	+1	validated	missense	c.2261	p.L754P	0.284	NULL	NULL	-	no_errors
LOC644153	644153	genome.wustl.edu	36	15	30463907	30463907	+	Silent	SNP	T	T	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	15	30463907	30463907	T	A	SNP	LOC644153	XM_001718804	human	genbank	54_36p	+1	model	silent	c.111	p.I37	0.999	NULL	HMMPfam_GED,HMMSmart_SM00302	-	pseudogene
RFPL3	10738	genome.wustl.edu	36	22	31086391	31086391	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	22	31086391	31086391	A	C	SNP	RFPL3	NM_001098535	human	genbank	54_36p	+1	validated	missense	c.526	p.T176P	0.996	HMMSmart_PRY	PatternScan_ZF_RING_1,superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
SYNJ1	8867	genome.wustl.edu	36	21	32960197	32960197	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	21	32960197	32960197	G	A	SNP	SYNJ1	NM_003895	human	genbank	54_36p	-1	validated	missense	c.2072	p.A691V	1.000	superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos	HMMPfam_Syja_N,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD	-	no_errors
CSF2RB	1439	genome.wustl.edu	36	22	35664191	35664191	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	22	35664191	35664191	C	G	SNP	CSF2RB	NM_000395	human	genbank	54_36p	+1	reviewed	missense	c.2395	p.R799G	0.000	NULL	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1	-	no_errors
LOC645548	645548	genome.wustl.edu	36	3	36784505	36784505	+	RNA	SNP	T	T	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	3	36784505	36784505	T	C	SNP	LOC645548	XR_017400	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SC65	10609	genome.wustl.edu	36	17	37220776	37220776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	17	37220776	37220776	C	T	SNP	SC65	NM_006455	human	genbank	54_36p	-1	validated	missense	c.652	p.G218R	0.998	NULL	NULL	-	no_errors
RNF5P1	286140	genome.wustl.edu	36	8	38577681	38577681	+	RNA	SNP	T	T	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	8	38577681	38577681	T	C	SNP	RNF5P1	NR_003129	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.998	-	-	-	pseudogene
AXUD1	64651	genome.wustl.edu	36	3	39159573	39159573	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	3	39159573	39159573	G	C	SNP	AXUD1	NM_033027	human	genbank	54_36p	-1	reviewed	missense	c.1747	p.L583V	0.588	NULL	NULL	-	no_errors
SETBP1	26040	genome.wustl.edu	36	18	40535418	40535418	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	18	40535418	40535418	C	A	SNP	SETBP1	ENST00000383046	human	ensembl	54_36p	+1	known	missense	c.109	p.P37T	0.996	NULL	NULL	-	no_errors
USP9X	8239	genome.wustl.edu	36	X	40885521	40885521	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	X	40885521	40885521	A	G	SNP	USP9X	NM_001039590	human	genbank	54_36p	+1	reviewed	missense	c.1054	p.M352V	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
PGC	5225	genome.wustl.edu	36	6	41816238	41816238	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	6	41816238	41816238	G	T	SNP	PGC	NM_002630	human	genbank	54_36p	-1	provisional	missense	c.736	p.Q246K	0.581	superfamily_Pept_Aspartic,HMMPfam_Asp	superfamily_Pept_Aspartic,HMMPfam_A1_Propeptide,HMMPfam_Asp,PatternScan_ASP_PROTEASE	-	no_errors
IRAK4	51135	genome.wustl.edu	36	12	42452384	42452384	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	12	42452384	42452384	C	G	SNP	IRAK4	NM_016123	human	genbank	54_36p	+1	reviewed	missense	c.442	p.P148A	0.085	NULL	superfamily_DEATH domain,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	-	no_errors
SERINC3	10955	genome.wustl.edu	36	20	42565928	42565928	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	20	42565928	42565928	G	A	SNP	SERINC3	NM_006811	human	genbank	54_36p	-1	validated	silent	c.997	p.L333	0.987	HMMPfam_Serinc	HMMPfam_Serinc	-	no_errors
HECW1	23072	genome.wustl.edu	36	7	43513298	43513298	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	7	43513298	43513298	C	A	SNP	HECW1	NM_015052	human	genbank	54_36p	+1	validated	nonsense	c.3669	p.Y1223*	1.000	NULL	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
HNRNPL	3191	genome.wustl.edu	36	19	44019211	44019211	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	19	44019211	44019211	G	A	SNP	HNRNPL	NM_001533	human	genbank	54_36p	-1	reviewed	silent	c.1761	p.H587	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
CDC5L	988	genome.wustl.edu	36	6	44472141	44472141	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	6	44472141	44472141	A	G	SNP	CDC5L	NM_001253	human	genbank	54_36p	+1	reviewed	silent	c.525	p.Q175	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors
FNDC3A	22862	genome.wustl.edu	36	13	48478385	48478385	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	13	48478385	48478385	C	G	SNP	FNDC3A	NM_001079673	human	genbank	54_36p	+1	validated	missense	c.58	p.L20V	1.000	NULL	HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
DNAH1	25981	genome.wustl.edu	36	3	52353572	52353572	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	3	52353572	52353572	C	T	SNP	DNAH1	ENST00000273600	human	ensembl	54_36p	+1	known	missense	c.1313	p.A438V	0.009	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
OLFM4	10562	genome.wustl.edu	36	13	52522435	52522435	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	13	52522435	52522435	C	A	SNP	OLFM4	NM_006418	human	genbank	54_36p	+1	reviewed	missense	c.1061	p.T354N	0.116	HMMPfam_OLF,HMMSmart_OLF	HMMPfam_OLF,HMMSmart_OLF	-	no_errors
MSX2P1	55545	genome.wustl.edu	36	17	53589394	53589394	+	RNA	SNP	G	A	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	17	53589394	53589394	G	A	SNP	MSX2P1	NR_002307	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.114	-	-	-	pseudogene
HUWE1	10075	genome.wustl.edu	36	X	53594852	53594852	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	X	53594852	53594852	C	A	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.9120	p.E3040D	0.999	NULL	HMMPfam_DUF908,superfamily_ARM repeat,HMMPfam_DUF913,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_WWE,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
HUWE1	10075	genome.wustl.edu	36	X	53689101	53689101	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	X	53689101	53689101	C	A	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.391	p.V131L	1.000	HMMPfam_DUF908	HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat	-	no_errors
CACNA2D3	55799	genome.wustl.edu	36	3	54773403	54773403	+	Silent	SNP	T	T	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	3	54773403	54773403	T	A	SNP	CACNA2D3	NM_018398	human	genbank	54_36p	+1	reviewed	silent	c.1365	p.A455	0.779	HMMPfam_Cache_1	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-	no_errors
RPS6KB1	6198	genome.wustl.edu	36	17	55325462	55325462	+	Silent	SNP	G	A	A	rs56376112	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	17	55325462	55325462	G	A	SNP	RPS6KB1	NM_003161	human	genbank	54_36p	+1	reviewed	silent	c.135	p.E45	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors
LOC100130849	0	genome.wustl.edu	36	7	56912657	56912657	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	7	56912657	56912657	C	A	SNP	LOC100130849	XM_001719090	human	genbank	54_36p	-1	model	missense	c.251	p.S84I	0.955	NULL	NULL	-	no_errors
CDH20	28316	genome.wustl.edu	36	18	57308995	57308995	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	18	57308995	57308995	C	A	SNP	CDH20	NM_031891	human	genbank	54_36p	+1	reviewed	missense	c.229	p.P77T	1.000	superfamily_Cadherin,HMMPfam_Cadherin	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
OR5AZ1P	0	genome.wustl.edu	36	11	57441793	57441793	+	Silent	SNP	G	T	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	11	57441793	57441793	G	T	SNP	OR5AZ1P	ENST00000319748	human	ensembl	54_36p	-1	known	silent	c.486	p.I162	0.002	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SIX1	6495	genome.wustl.edu	36	14	60183000	60183000	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	14	60183000	60183000	G	A	SNP	SIX1	NM_005982	human	genbank	54_36p	-1	reviewed	silent	c.609	p.L203	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
MON2	23041	genome.wustl.edu	36	12	61212493	61212493	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	12	61212493	61212493	T	A	SNP	MON2	NM_015026	human	genbank	54_36p	+1	validated	missense	c.1409	p.M470K	1.000	NULL	superfamily_ARM-type_fold,HMMPfam_DUF1981	-	no_errors
USP29	57663	genome.wustl.edu	36	19	62332911	62332911	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	19	62332911	62332911	G	A	SNP	USP29	NM_020903	human	genbank	54_36p	+1	validated	silent	c.1056	p.G352	0.000	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
SLC22A6	9356	genome.wustl.edu	36	11	62508466	62508466	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	11	62508466	62508466	G	A	SNP	SLC22A6	NM_004790	human	genbank	54_36p	-1	reviewed	silent	c.273	p.L91	0.858	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
KCNH5	27133	genome.wustl.edu	36	14	62553350	62553350	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	14	62553350	62553350	A	G	SNP	KCNH5	NM_139318	human	genbank	54_36p	-1	reviewed	missense	c.149	p.L50P	1.000	superfamily_PYP-like sensor domain (PAS domain)	superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
LAS1L	81887	genome.wustl.edu	36	X	64666441	64666441	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	X	64666441	64666441	C	G	SNP	LAS1L	NM_031206	human	genbank	54_36p	-1	provisional	missense	c.557	p.C186S	1.000	HMMPfam_Las1	HMMPfam_Las1	-	no_errors
ACTN3	89	genome.wustl.edu	36	11	66081962	66081962	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	11	66081962	66081962	G	T	SNP	ACTN3	NM_001104	human	genbank	54_36p	+1	reviewed	missense	c.1114	p.G372C	1.000	superfamily_Spectrin repeat,HMMPfam_Spectrin	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand_Ca_insen,PatternScan_DEHYDRATASE_SER_THR	-	pseudogene
LRIG1	26018	genome.wustl.edu	36	3	66517235	66517235	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	3	66517235	66517235	G	T	SNP	LRIG1	NM_015541	human	genbank	54_36p	-1	validated	silent	c.1941	p.R647	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
FRMD4B	23150	genome.wustl.edu	36	3	69325656	69325656	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	3	69325656	69325656	G	C	SNP	FRMD4B	NM_015123	human	genbank	54_36p	-1	validated	missense	c.1547	p.A516G	1.000	NULL	superfamily_Ubiquitin-like,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C	-	no_errors
TTYH2	94015	genome.wustl.edu	36	17	69751204	69751204	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	17	69751204	69751204	G	C	SNP	TTYH2	NM_032646	human	genbank	54_36p	+1	reviewed	splice_site	c.731+1	e5+1	1.000	-	-	-	no_errors
NONO	4841	genome.wustl.edu	36	X	70436577	70436577	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	X	70436577	70436577	G	T	SNP	NONO	NM_007363	human	genbank	54_36p	+1	reviewed	missense	c.1342	p.G448C	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_NOPS	-	no_errors
DYSF	8291	genome.wustl.edu	36	2	71761736	71761736	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	71761736	71761736	T	G	SNP	DYSF	NM_003494	human	genbank	54_36p	+1	reviewed	missense	c.6044	p.L2015R	0.994	NULL	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerA,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694	-	no_errors
PSMD7	5713	genome.wustl.edu	36	16	72893659	72893659	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	16	72893659	72893659	G	A	SNP	PSMD7	NM_002811	human	genbank	54_36p	+1	reviewed	missense	c.406	p.E136K	1.000	HMMSmart_JAB_MPN	HMMPfam_Mov34,HMMSmart_JAB_MPN	-	no_errors
XIST	7503	genome.wustl.edu	36	X	72963833	72963833	+	RNA	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	X	72963833	72963833	C	A	SNP	XIST	NR_001564	human	genbank	54_36p	-1	reviewed	rna	NULL	NULL	0.001	-	-	-	no_errors
GDA	9615	genome.wustl.edu	36	9	74030496	74030496	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	9	74030496	74030496	T	G	SNP	GDA	NM_004293	human	genbank	54_36p	+1	validated	missense	c.798	p.D266E	1.000	HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases	HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases	-	no_errors
MAGI2	9863	genome.wustl.edu	36	7	77594576	77594576	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	7	77594576	77594576	C	T	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	silent	c.3297	p.R1099	1.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	-	no_errors
FASN	2194	genome.wustl.edu	36	17	77634686	77634686	+	Silent	SNP	C	T	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	17	77634686	77634686	C	T	SNP	FASN	NM_004104	human	genbank	54_36p	-1	reviewed	silent	c.5337	p.P1779	0.051	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N	superfamily_Thiolase-like,HMMPfam_ketoacyl-synt,PatternScan_B_KETOACYL_SYNTHASE,HMMPfam_Ketoacyl-synt_C,superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_12,superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N,HMMPfam_adh_short,superfamily_ACP-like,HMMPfam_PP-binding,PatternScan_PHOSPHOPANTETHEINE,superfamily_alpha/beta-Hydrolases,HMMPfam_Thioesterase	-	no_errors
NRXN3	9369	genome.wustl.edu	36	14	78816484	78816484	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	14	78816484	78816484	G	C	SNP	NRXN3	NM_001105250	human	genbank	54_36p	+1	reviewed	missense	c.97	p.V33L	1.000	NULL	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_4.1m	-	no_errors
LIN7A	8825	genome.wustl.edu	36	12	79729467	79729467	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	12	79729467	79729467	G	A	SNP	LIN7A	NM_004664	human	genbank	54_36p	-1	validated	nonsense	c.610	p.R204*	0.954	superfamily_PDZ domain-like	HMMSmart_SM00569,HMMPfam_L27,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
PTEN	5728	genome.wustl.edu	36	10	89701853	89701853	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	10	89701853	89701853	A	C	SNP	PTEN	NM_000314	human	genbank	54_36p	+1	reviewed	splice_site	c.493-2	e6-2	1.000	-	-	-	no_errors
SCARNA9	0	genome.wustl.edu	36	11	93094571	93094571	+	RNA	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	11	93094571	93094571	G	A	SNP	SCARNA9	NR_002569	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.271	-	-	-	no_errors
C15orf51	196968	genome.wustl.edu	36	15	98148110	98148110	+	RNA	SNP	C	G	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	15	98148110	98148110	C	G	SNP	C15orf51	NR_003260	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.000	-	-	-	pseudogene
CHI3L2	1117	genome.wustl.edu	36	1	111582908	111582908	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	1	111582908	111582908	G	T	SNP	CHI3L2	NM_004000	human	genbank	54_36p	+1	validated	missense	c.749	p.G250V	0.551	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat	PatternScan_CHITINASE_18,HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat,superfamily_SSF54556	-	no_errors
DPP10	57628	genome.wustl.edu	36	2	116213820	116213820	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	116213820	116213820	T	C	SNP	DPP10	NM_020868	human	genbank	54_36p	+1	reviewed	missense	c.733	p.S245P	1.000	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	-	no_errors
KIAA0999	23387	genome.wustl.edu	36	11	116235414	116235414	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	11	116235414	116235414	G	C	SNP	KIAA0999	NM_025164	human	genbank	54_36p	-1	validated	missense	c.2224	p.Q742E	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TFCP2L1	29842	genome.wustl.edu	36	2	121709281	121709281	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	121709281	121709281	G	A	SNP	TFCP2L1	NM_014553	human	genbank	54_36p	-1	validated	silent	c.1080	p.N360	0.999	superfamily_SAM_homology	HMMPfam_CP2,superfamily_SAM_homology	-	no_errors
CTBP2	1488	genome.wustl.edu	36	10	126706029	126706029	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	10	126706029	126706029	G	C	SNP	CTBP2	NM_022802	human	genbank	54_36p	-1	reviewed	missense	c.290	p.A97G	0.899	NULL	superfamily_SSF52283,HMMPfam_2-Hacid_dh,superfamily_NAD(P)-bd,HMMPfam_2-Hacid_dh_C,PatternScan_D_2_HYDROXYACID_DH_3	-	no_errors
WDR33	55339	genome.wustl.edu	36	2	128242256	128242256	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	128242256	128242256	T	A	SNP	WDR33	NM_018383	human	genbank	54_36p	-1	reviewed	nonsense	c.355	p.K119*	0.998	superfamily_WD40_like,HMMSmart_WD40	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMPfam_Collagen	-	no_errors
BCORL1	63035	genome.wustl.edu	36	X	128975402	128975402	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	X	128975402	128975402	G	T	SNP	BCORL1	NM_021946	human	genbank	54_36p	+1	validated	missense	c.973	p.A325S	0.058	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
PLK4	10733	genome.wustl.edu	36	4	129033084	129033084	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	4	129033084	129033084	C	A	SNP	PLK4	NM_014264	human	genbank	54_36p	+1	reviewed	missense	c.2153	p.S718Y	0.998	superfamily_Kinase_like	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_Sak_Polo,superfamily_SSF82615	-	no_errors
LOC643778	643778	genome.wustl.edu	36	6	129520254	129520254	+	RNA	SNP	A	A	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	6	129520254	129520254	A	G	SNP	LOC643778	XR_017181	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.627	-	-	-	pseudogene
TSC1	7248	genome.wustl.edu	36	9	134769650	134769650	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	9	134769650	134769650	G	T	SNP	TSC1	NM_000368	human	genbank	54_36p	-1	validated	silent	c.2010	p.P670	1.000	HMMPfam_Hamartin	HMMPfam_Hamartin	-	no_errors
CREB3L2	64764	genome.wustl.edu	36	7	137263584	137263584	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	7	137263584	137263584	G	C	SNP	CREB3L2	NM_194071	human	genbank	54_36p	-1	validated	silent	c.171	p.L57	1.000	NULL	superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC	-	no_errors
FLJ43860	389690	genome.wustl.edu	36	8	142515311	142515311	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	8	142515311	142515311	C	G	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	missense	c.3439	p.G1147R	0.994	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	pseudogene
GPAA1	8733	genome.wustl.edu	36	8	145212370	145212370	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	8	145212370	145212370	G	A	SNP	GPAA1	NM_003801	human	genbank	54_36p	+1	reviewed	missense	c.1451	p.R484Q	1.000	HMMPfam_Gaa1	HMMPfam_Gaa1	-	no_errors
ZNF16	7564	genome.wustl.edu	36	8	146142254	146142254	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	8	146142254	146142254	G	C	SNP	ZNF16	NM_001029976	human	genbank	54_36p	-1	reviewed	missense	c.143	p.P48R	0.001	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CGN	57530	genome.wustl.edu	36	1	149774750	149774750	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	1	149774750	149774750	C	A	SNP	CGN	NM_020770	human	genbank	54_36p	+1	validated	missense	c.3045	p.D1015E	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_tail_1	-	no_errors
PASD1	139135	genome.wustl.edu	36	X	150591467	150591467	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	X	150591467	150591467	C	A	SNP	PASD1	NM_173493	human	genbank	54_36p	+1	validated	missense	c.1594	p.L532M	0.670	NULL	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
ADAMTS4	9507	genome.wustl.edu	36	1	159427926	159427926	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	1	159427926	159427926	C	A	SNP	ADAMTS4	NM_005099	human	genbank	54_36p	-1	reviewed	missense	c.2140	p.V714F	0.465	HMMPfam_ADAM_spacer1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
PLG	5340	genome.wustl.edu	36	6	161072910	161072910	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	6	161072910	161072910	A	T	SNP	PLG	NM_000301	human	genbank	54_36p	+1	validated	nonsense	c.1582	p.K528*	0.387	HMMSmart_KR,superfamily_Kringle-like,HMMPfam_Kringle	HMMPfam_PAN_1,superfamily_SSF57414,HMMSmart_PAN_AP,superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179116883	179116883	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	179116883	179116883	G	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	nonsense	c.84177	p.Y28059*	0.988	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_I-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179162782	179162782	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	179162782	179162782	T	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.49859	p.Y16620F	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
ZNF804A	91752	genome.wustl.edu	36	2	185439485	185439485	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	185439485	185439485	G	C	SNP	ZNF804A	NM_194250	human	genbank	54_36p	+1	provisional	splice_site	c.255+1	e2+1	1.000	-	-	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214439975	214439975	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	1	214439975	214439975	G	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.3428	p.T1143K	0.987	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Fibronectin type III	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
INPP5D	3635	genome.wustl.edu	36	2	233750686	233750686	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	233750686	233750686	C	A	SNP	INPP5D	ENST00000359570	human	ensembl	54_36p	+1	known	missense	c.1894	p.L632I	1.000	superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos	HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF55550,superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos	-	no_errors
TFB2M	64216	genome.wustl.edu	36	1	244771090	244771090	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	1	244771090	244771090	G	C	SNP	TFB2M	NM_022366	human	genbank	54_36p	-1	validated	missense	c.1057	p.Q353E	0.003	superfamily_SSF53335,HMMPfam_RrnaAD	PatternScan_RRNA_A_DIMETH,superfamily_SSF53335,HMMPfam_RrnaAD	-	no_errors
ZNF669	79862	genome.wustl.edu	36	1	245331012	245331012	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	1	245331012	245331012	C	T	SNP	ZNF669	NM_024804	human	genbank	54_36p	-1	validated	missense	c.682	p.G228R	0.995	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
OR2T3	343173	genome.wustl.edu	36	1	246703368	246703368	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	1	246703368	246703368	C	A	SNP	OR2T3	NM_001005495	human	genbank	54_36p	+1	provisional	missense	c.94	p.L32I	0.201	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR14I1	401994	genome.wustl.edu	36	1	246911779	246911779	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	1	246911779	246911779	G	T	SNP	OR14I1	NM_001004734	human	genbank	54_36p	-1	provisional	nonsense	c.450	p.C150*	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC100133432	0	genome.wustl.edu	36	11	665163	665165	+	In_Frame_Del	DEL	CAA	CAA	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	CAA	CAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	11	665163	665165	CAA	-	DEL	LOC100133432	XM_001714734	human	genbank	54_36p	-1	model	in_frame_del	c.2392_2390	p.V797in_frame_del	0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[663912,667554])	no_start_codon:pseudogene:no_stop_codon
TP53	7157	genome.wustl.edu	36	17	7520046	7520047	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	CA	CA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	17	7520046	7520047	CA	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.366_365	p.V122fs	0.615:0.928	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7520037,7520315])	no_errors
OXA1L	5018	genome.wustl.edu	36	14	22310105	22310129	+	Frame_Shift_Del	DEL	CCTGGTCCAAGTATCCTGTCTCCGG	CCTGGTCCAAGTATCCTGTCTCCGG	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	CCTGGTCCAAGTATCCTGTCTCCGG	CCTGGTCCAAGTATCCTGTCTCCGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	14	22310105	22310129	CCTGGTCCAAGTATCCTGTCTCCGG	-	DEL	OXA1L	NM_005015	human	genbank	54_36p	+1	validated	frame_shift_del	c.1158_1182	p.L387fs	0.999:1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:0.991:0.974:0.973:0.964:0.976:0.998:0.998:1.000:1.000:0.994:1.000:1.000:0.955	HMMPfam_60KD_IMP	HMMPfam_60KD_IMP	(deletion:cds_exon[22310067,22310229])	no_errors
WIPF3	644150	genome.wustl.edu	36	7	29910526	29910552	+	Frame_Shift_Del	DEL	GAATGTAAAACCAGGAATTCTCCTCAG	GAATGTAAAACCAGGAATTCTCCTCAG	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	GAATGTAAAACCAGGAATTCTCCTCAG	GAATGTAAAACCAGGAATTCTCCTCAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	7	29910526	29910552	GAATGTAAAACCAGGAATTCTCCTCAG	-	DEL	WIPF3	NM_001080529	human	genbank	54_36p	+1	provisional	frame_shift_del	c.1451_1452	p.*484fs	0.011:0.011	NULL	HMMPfam_WH2,HMMSmart_WH2	(deletion:cds_exon[29910427,29910527], utr_exon[29910528,29912316])	no_errors
WDR48	57599	genome.wustl.edu	36	3	39104656	39104672	+	Frame_Shift_Del	DEL	GAAATGGATATTTTCAA	GAAATGGATATTTTCAA	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	GAAATGGATATTTTCAA	GAAATGGATATTTTCAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	3	39104656	39104672	GAAATGGATATTTTCAA	-	DEL	WDR48	NM_020839	human	genbank	54_36p	+1	provisional	frame_shift_del	c.1508_1524	p.N504fs	1.000:0.998:1.000:1.000:1.000:1.000:0.998:0.058:0.990:0.999:0.995:1.000:1.000:1.000:1.000:1.000:0.974	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[39104623,39104728])	no_errors
MACF1	23499	genome.wustl.edu	36	1	39671357	39671383	+	In_Frame_Del	DEL	CAGTCACCGTAGTGAAATCTTTGGCAC	CAGTCACCGTAGTGAAATCTTTGGCAC	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	CAGTCACCGTAGTGAAATCTTTGGCAC	CAGTCACCGTAGTGAAATCTTTGGCAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	1	39671357	39671383	CAGTCACCGTAGTGAAATCTTTGGCAC	-	DEL	MACF1	NM_033044	human	genbank	54_36p	+1	reviewed	in_frame_del	c.12828_12854	p.FSHRSEIFGT4276in_frame_delL	1.000:1.000:1.000:0.999:1.000:1.000:0.995:0.996:0.997:0.938:0.966:0.997:0.997:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:0.989:0.986:0.953	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2	(deletion:cds_exon[39671307,39671414])	no_errors
FSHR	2492	genome.wustl.edu	36	2	49043798	49043823	+	Frame_Shift_Del	DEL	CTGTGAGGTAGATGTGGATATAGCAG	CTGTGAGGTAGATGTGGATATAGCAG	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	CTGTGAGGTAGATGTGGATATAGCAG	CTGTGAGGTAGATGTGGATATAGCAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	2	49043798	49043823	CTGTGAGGTAGATGTGGATATAGCAG	-	DEL	FSHR	NM_000145	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1666_1641	p.C548fs	1.000:0.792:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.890:0.615:0.384:0.207:0.177:0.164:0.188:0.994:1.000:1.000:1.000:1.000:0.988	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[49043376,49044609])	no_errors
STAT6	6778	genome.wustl.edu	36	12	55787285	55787304	+	Frame_Shift_Del	DEL	TCCATAACAGCTTTTTTCTC	TCCATAACAGCTTTTTTCTC	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	TCCATAACAGCTTTTTTCTC	TCCATAACAGCTTTTTTCTC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	12	55787285	55787304	TCCATAACAGCTTTTTTCTC	-	DEL	STAT6	NM_003153	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.335_316	p.E106fs	0.998:1.000:1.000:1.000:0.999:0.999:1.000:1.000:1.000:1.000:1.000:0.997:0.996:0.997:0.998:1.000:1.000:1.000:1.000:1.000	superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int	superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,HMMPfam_STAT_alpha,superfamily_STAT,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2,HMMSmart_SM00252	(deletion:cds_exon[55787281,55787364])	no_errors
NAIP	4671	genome.wustl.edu	36	5	70344297	70344327	+	Frame_Shift_Del	DEL	CAAAAGTCTTTAACCTTTTTGCTTCACTGCG	CAAAAGTCTTTAACCTTTTTGCTTCACTGCG	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	CAAAAGTCTTTAACCTTTTTGCTTCACTGCG	CAAAAGTCTTTAACCTTTTTGCTTCACTGCG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	5	70344297	70344327	CAAAAGTCTTTAACCTTTTTGCTTCACTGCG	-	DEL	NAIP	NM_004536	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.202_172	p.R58fs	0.156:0.194:0.227:0.235:0.228:0.282:0.293:0.307:0.320:0.318:0.319:0.409:0.438:0.567:0.698:0.735:0.780:0.827:0.874:0.890:0.968:0.988:0.994:0.996:0.996:0.994:0.992:0.985:0.966:0.962:0.945	superfamily_SSF57924,HMMSmart_BIR	superfamily_SSF57924,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_AAA,HMMPfam_NACHT,superfamily_SSF52047	(deletion:cds_exon[70343931,70344498])	no_errors
ROBO1	6091	genome.wustl.edu	36	3	78792975	78792993	+	Frame_Shift_Del	DEL	GGATTACCACACTGTTTTT	GGATTACCACACTGTTTTT	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	GGATTACCACACTGTTTTT	GGATTACCACACTGTTTTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	3	78792975	78792993	GGATTACCACACTGTTTTT	-	DEL	ROBO1	NM_002941	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2215_2197	p.K733fs	1.000:1.000:1.000:0.998:0.980:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.999:1.000:1.000:1.000:1.000:0.997	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	(deletion:cds_exon[78792870,78793101])	no_errors
TAL2	6887	genome.wustl.edu	36	9	107464695	107464697	+	In_Frame_Del	DEL	CCT	CCT	-	novel	unknown	TCGA-61-1900-01A-01W-0639-09	TCGA-61-1900-11A-01W-0640-09	CCT	CCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0f0e8407-547e-4a27-a869-246a768a31d5	8b05f3a2-5815-433c-8120-924838ba5d4e	9	107464695	107464697	CCT	-	DEL	TAL2	NM_005421	human	genbank	54_36p	+1	reviewed	in_frame_del	c.97_99	p.P34in_frame_del	1.000:1.000:1.000	HMMPfam_HLH,superfamily_HLH_basic,HMMSmart_HLH	HMMPfam_HLH,superfamily_HLH_basic,HMMSmart_HLH	(deletion:cds_exon[107464599,107464925])	no_errors