Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error AP3D1 8943 genome.wustl.edu 36 19 2060147 2060147 + Missense_Mutation SNP T T G novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 19 2060147 2060147 T G SNP AP3D1 NM_003938 human genbank 54_36p -1 validated missense c.3224 p.D1075A 1.000 HMMPfam_BLVR superfamily_ARM repeat,HMMPfam_Adaptin_N,HMMPfam_BLVR - no_errors OR51B6 390058 genome.wustl.edu 36 11 5330037 5330037 + Missense_Mutation SNP C C A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 11 5330037 5330037 C A SNP OR51B6 NM_001004750 human genbank 54_36p +1 provisional missense c.724 p.H242N 1.000 superfamily_SSF81321,HMMPfam_7tm_1 PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1 - no_errors FUT6 2528 genome.wustl.edu 36 19 5782396 5782396 + Missense_Mutation SNP G G C novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 19 5782396 5782396 G C SNP FUT6 ENST00000341530 human ensembl 54_36p -1 known missense c.1091 p.P364R 0.062 NULL HMMPfam_Glyco_transf_10 - no_errors BMP2 650 genome.wustl.edu 36 20 6707301 6707301 + Silent SNP A A G novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 20 6707301 6707301 A G SNP BMP2 NM_001200 human genbank 54_36p +1 reviewed silent c.756 p.Q252 0.999 HMMPfam_TGFb_propeptide HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1 - no_errors TP53 7157 genome.wustl.edu 36 17 7519204 7519204 + Missense_Mutation SNP G G A rs28934874 unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 17 7519204 7519204 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.451 p.P151S 0.997 HMMPfam_P53,superfamily_p53-like transcription factors HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain - no_errors LOC284230 284230 genome.wustl.edu 36 18 13909663 13909663 + Missense_Mutation SNP C C T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 18 13909663 13909663 C T SNP LOC284230 XM_208185 human genbank 54_36p -1 model missense c.260 p.R87K 1.000 superfamily_Zn-binding ribosomal proteins,HMMPfam_Ribosomal_L44 superfamily_Zn-binding ribosomal proteins,HMMPfam_Ribosomal_L44 - pseudogene HSPG2 3339 genome.wustl.edu 36 1 22030132 22030132 + Silent SNP G G A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 1 22030132 22030132 G A SNP HSPG2 NM_005529 human genbank 54_36p -1 validated silent c.11601 p.Y3867 1.000 superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179 HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMSmart_SM00281,HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_EGF,HMMPfam_Laminin_G_1 - no_errors DDX11 1663 genome.wustl.edu 36 12 31148085 31148085 + Missense_Mutation SNP C C G novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 12 31148085 31148085 C G SNP DDX11 NM_152438 human genbank 54_36p +1 reviewed missense c.2764 p.P922A 0.060 NULL superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00491 - no_errors XDH 7498 genome.wustl.edu 36 2 31442366 31442366 + Silent SNP T T A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 2 31442366 31442366 T A SNP XDH NM_000379 human genbank 54_36p -1 reviewed silent c.2436 p.A812 0.041 superfamily_Ald_xan_DH_mo_bd,HMMPfam_Ald_Xan_dh_C2,PatternScan_MOLYBDOPTERIN_EUK superfamily_Ferredoxin,HMMPfam_Fer2,PatternScan_2FE2S_FER_1,HMMPfam_Fer2_2,superfamily_2Fe-2S_bind,superfamily_FAD-binding_2,HMMPfam_FAD_binding_5,superfamily_CO_deh_flav_C,HMMPfam_CO_deh_flav_C,superfamily_Aldxan_dh_hamm,HMMPfam_Ald_Xan_dh_C,superfamily_Ald_xan_DH_mo_bd,HMMPfam_Ald_Xan_dh_C2,PatternScan_MOLYBDOPTERIN_EUK - no_errors AP1GBP1 11276 genome.wustl.edu 36 17 32976494 32976494 + Silent SNP G G A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 17 32976494 32976494 G A SNP AP1GBP1 NM_007247 human genbank 54_36p -1 reviewed silent c.2895 p.A965 0.997 NULL HMMSmart_SM00027,superfamily_EF-hand - no_errors RNF122 79845 genome.wustl.edu 36 8 33528420 33528420 + Missense_Mutation SNP C C T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 8 33528420 33528420 C T SNP RNF122 NM_024787 human genbank 54_36p -1 reviewed missense c.212 p.R71Q 1.000 NULL PatternScan_ZF_RING_1,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4 - no_errors LETM2 137994 genome.wustl.edu 36 8 38369456 38369456 + Missense_Mutation SNP C C G novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 8 38369456 38369456 C G SNP LETM2 NM_144652 human genbank 54_36p +1 provisional missense c.146 p.A49G 0.000 NULL HMMPfam_LETM1 - no_errors EGFLAM 133584 genome.wustl.edu 36 5 38442852 38442852 + Missense_Mutation SNP G G A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 5 38442852 38442852 G A SNP EGFLAM NM_152403 human genbank 54_36p +1 validated missense c.994 p.G332R 0.017 NULL superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_EGF,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_EGF,PatternScan_EGF_2,HMMPfam_Laminin_G_2 - no_errors INO80 54617 genome.wustl.edu 36 15 39136138 39136138 + Missense_Mutation SNP T T C novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 15 39136138 39136138 T C SNP INO80 NM_017553 human genbank 54_36p -1 validated missense c.2044 p.T682A 1.000 superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C - no_errors ADAM2 2515 genome.wustl.edu 36 8 39743869 39743869 + Missense_Mutation SNP C C A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 8 39743869 39743869 C A SNP ADAM2 NM_001464 human genbank 54_36p -1 reviewed missense c.1271 p.G424V 0.000 HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin) "HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2" - no_errors TMEM87A 25963 genome.wustl.edu 36 15 40315822 40315822 + Missense_Mutation SNP T T C novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 15 40315822 40315822 T C SNP TMEM87A NM_015497 human genbank 54_36p -1 validated missense c.956 p.Y319C 1.000 HMMPfam_Lung_7-TM_R HMMPfam_Lung_7-TM_R - no_errors SLC8A1 6546 genome.wustl.edu 36 2 40510459 40510459 + Missense_Mutation SNP C C T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 2 40510459 40510459 C T SNP SLC8A1 NM_021097 human genbank 54_36p -1 validated missense c.466 p.V156M 1.000 HMMPfam_Na_Ca_ex HMMPfam_Na_Ca_ex,HMMPfam_Calx-beta,HMMSmart_SM00237 - no_errors CCNDBP1 23582 genome.wustl.edu 36 15 41265678 41265678 + Silent SNP G G A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 15 41265678 41265678 G A SNP CCNDBP1 NM_012142 human genbank 54_36p +1 reviewed silent c.204 p.T68 0.883 NULL NULL - no_errors GPR34 2857 genome.wustl.edu 36 X 41439931 41439931 + Missense_Mutation SNP C C T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c X 41439931 41439931 C T SNP GPR34 NM_001097579 human genbank 54_36p +1 validated missense c.101 p.P34L 0.000 superfamily_Family A G protein-coupled receptor-like superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors LRCH1 23143 genome.wustl.edu 36 13 46160010 46160010 + Missense_Mutation SNP A A C novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 13 46160010 46160010 A C SNP LRCH1 NM_015116 human genbank 54_36p +1 provisional missense c.845 p.H282P 1.000 superfamily_L domain-like superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,PatternScan_PTS_HPR_SER,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033 - no_errors ATP8B4 79895 genome.wustl.edu 36 15 48059158 48059158 + Missense_Mutation SNP A A G novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 15 48059158 48059158 A G SNP ATP8B4 NM_024837 human genbank 54_36p -1 validated missense c.982 p.W328R 1.000 superfamily_SSF81665,HMMPfam_E1-E2_ATPase superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3 - no_errors ACCN2 41 genome.wustl.edu 36 12 48759984 48759984 + Missense_Mutation SNP G G T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 12 48759984 48759984 G T SNP ACCN2 NM_020039 human genbank 54_36p +1 reviewed missense c.1084 p.V362L 1.000 HMMPfam_ASC HMMPfam_ASC,PatternScan_ASC - no_errors ZFYVE9 9372 genome.wustl.edu 36 1 52519922 52519922 + Nonsense_Mutation SNP T T A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 1 52519922 52519922 T A SNP ZFYVE9 NM_004799 human genbank 54_36p +1 reviewed nonsense c.2871 p.Y957* 1.000 NULL HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger - no_errors SLC6A2 6530 genome.wustl.edu 36 16 54286690 54286690 + Splice_Site SNP G G T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 16 54286690 54286690 G T SNP SLC6A2 NM_001043 human genbank 54_36p +1 validated splice_site c.1023-1 e7-1 1.000 - - - no_errors PCDH15 65217 genome.wustl.edu 36 10 55391643 55391643 + Missense_Mutation SNP G G A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 10 55391643 55391643 G A SNP PCDH15 NM_033056 human genbank 54_36p -1 reviewed missense c.2884 p.R962C 0.933 superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112 HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin - no_errors EFEMP1 2202 genome.wustl.edu 36 2 55998523 55998523 + Missense_Mutation SNP C C A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 2 55998523 55998523 C A SNP EFEMP1 NM_001039348 human genbank 54_36p -1 reviewed missense c.298 p.G100W 0.008 NULL superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2 - no_errors LOC642975 642975 genome.wustl.edu 36 11 56214758 56214758 + RNA SNP C A A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 11 56214758 56214758 C A SNP LOC642975 XR_016156 human genbank 54_36p +1 model rna NULL NULL 1.000 - - - pseudogene FLNB 2317 genome.wustl.edu 36 3 58037908 58037908 + Missense_Mutation SNP G G C novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 3 58037908 58037908 G C SNP FLNB NM_001457 human genbank 54_36p +1 validated missense c.388 p.D130H 1.000 superfamily_Calponin-homology superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN - no_errors PRICKLE2 166336 genome.wustl.edu 36 3 64060423 64060423 + Missense_Mutation SNP G G C novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 3 64060423 64060423 G C SNP PRICKLE2 NM_198859 human genbank 54_36p -1 validated missense c.1879 p.P627A 0.998 NULL HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716 - no_errors ABCA10 10349 genome.wustl.edu 36 17 64671835 64671835 + Missense_Mutation SNP T G G novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 17 64671835 64671835 T G SNP ABCA10 NM_080282 human genbank 54_36p -1 reviewed missense c.3338 p.K1113T 0.003 NULL superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1 - no_errors CATSPER1 117144 genome.wustl.edu 36 11 65550415 65550415 + Silent SNP G A A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 11 65550415 65550415 G A SNP CATSPER1 NM_053054 human genbank 54_36p -1 reviewed silent c.12 p.N4 0.000 NULL superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans - no_errors PCDH9 5101 genome.wustl.edu 36 13 66698288 66698288 + Silent SNP C C T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 13 66698288 66698288 C T SNP PCDH9 NM_203487 human genbank 54_36p -1 reviewed silent c.2286 p.K762 1.000 superfamily_Cadherin-like,HMMSmart_SM00112 HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMPfam_Protocadherin - no_errors COL13A1 1305 genome.wustl.edu 36 10 71324436 71324436 + Splice_Site SNP G G C novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 10 71324436 71324436 G C SNP COL13A1 NM_005203 human genbank 54_36p +1 reviewed splice_site c.604-1 e10-1 0.986 - - - no_errors VCL 7414 genome.wustl.edu 36 10 75544635 75544635 + Missense_Mutation SNP C C A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 10 75544635 75544635 C A SNP VCL NM_014000 human genbank 54_36p +1 reviewed missense c.3230 p.T1077N 1.000 HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin superfamily_alpha-catenin/vinculin,HMMPfam_Vinculin,PatternScan_VINCULIN_1,PatternScan_VINCULIN_2 - no_errors LRIT1 26103 genome.wustl.edu 36 10 85982376 85982376 + Missense_Mutation SNP G G C novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 10 85982376 85982376 G C SNP LRIT1 NM_015613 human genbank 54_36p -1 validated missense c.1159 p.P387A 0.001 NULL HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like - no_errors RLBP1 6017 genome.wustl.edu 36 15 87559448 87559448 + Nonsense_Mutation SNP G T T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 15 87559448 87559448 G T SNP RLBP1 NM_000326 human genbank 54_36p -1 reviewed nonsense c.372 p.Y124* 1.000 superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMPfam_CRAL_TRIO,superfamily_CRAL/TRIO domain,HMMSmart_SM00516 - no_errors ZC3H14 79882 genome.wustl.edu 36 14 88138180 88138180 + Missense_Mutation SNP G G A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 14 88138180 88138180 G A SNP ZC3H14 NM_024824 human genbank 54_36p +1 validated missense c.1514 p.R505Q 1.000 NULL HMMPfam_zf-CCCH,HMMSmart_SM00356 - no_errors ECM2 1842 genome.wustl.edu 36 9 94304630 94304630 + Silent SNP G C C novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 9 94304630 94304630 G C SNP ECM2 NM_001393 human genbank 54_36p -1 reviewed silent c.1590 p.A530 0.983 superfamily_SSF52058 HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_SSF52058,HMMPfam_LRR_1 - no_errors PPM2C 54704 genome.wustl.edu 36 8 95004751 95004751 + Missense_Mutation SNP G G T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 8 95004751 95004751 G T SNP PPM2C NM_018444 human genbank 54_36p +1 reviewed missense c.1288 p.V430F 1.000 superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,PatternScan_PP2C,HMMPfam_PP2C - no_errors KIAA1310 55683 genome.wustl.edu 36 2 96634783 96634783 + Splice_Site SNP C C A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 2 96634783 96634783 C A SNP KIAA1310 NM_017991 human genbank 54_36p -1 validated splice_site c.1672+1 e13+1 1.000 - - - no_errors STAB2 55576 genome.wustl.edu 36 12 102508928 102508928 + Nonsense_Mutation SNP C C T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 12 102508928 102508928 C T SNP STAB2 NM_017564 human genbank 54_36p +1 reviewed nonsense c.205 p.R69* 0.193 NULL HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_alliinase,superfamily_SSF57196,HMMPfam_EGF,superfamily_BIgH3_FAS1,HMMPfam_Fasciclin,HMMSmart_FAS1,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,superfamily_Grow_fac_recept,HMMPfam_EGF_2,HMMSmart_LINK,HMMPfam_Xlink,superfamily_C-type_lectin_fold,PatternScan_LINK_1 - no_errors ZC3H6 376940 genome.wustl.edu 36 2 112785885 112785885 + Missense_Mutation SNP G G T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 2 112785885 112785885 G T SNP ZC3H6 NM_198581 human genbank 54_36p +1 validated missense c.647 p.G216V 1.000 NULL superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_Multiheme cytochromes - no_errors LOC392264 392264 genome.wustl.edu 36 8 120561734 120561734 + RNA SNP A A T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 8 120561734 120561734 A T SNP LOC392264 XR_016686 human genbank 54_36p -1 model rna NULL NULL 1.000 - - - pseudogene C10orf120 399814 genome.wustl.edu 36 10 124447535 124447535 + Nonsense_Mutation SNP T T A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 10 124447535 124447535 T A SNP C10orf120 NM_001010912 human genbank 54_36p -1 predicted nonsense c.712 p.R238* 0.001 NULL NULL - no_errors MARCH3 115123 genome.wustl.edu 36 5 126241824 126241824 + Silent SNP C C G novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 5 126241824 126241824 C G SNP MARCH3 NM_178450 human genbank 54_36p -1 validated silent c.555 p.L185 1.000 NULL HMMSmart_RINGv,HMMPfam_zf-C3HC4 - no_errors TNPO3 23534 genome.wustl.edu 36 7 128427758 128427758 + Silent SNP C C T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 7 128427758 128427758 C T SNP TNPO3 NM_012470 human genbank 54_36p -1 validated silent c.972 p.L324 1.000 superfamily_ARM repeat superfamily_ARM repeat,HMMPfam_Xpo1 - no_errors EPHB1 2047 genome.wustl.edu 36 3 136153020 136153020 + Missense_Mutation SNP G G A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 3 136153020 136153020 G A SNP EPHB1 NM_004441 human genbank 54_36p +1 reviewed missense c.241 p.G81R 1.000 superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615 superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1 - no_errors LOC343052 343052 genome.wustl.edu 36 1 152041649 152041649 + RNA SNP G C C novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 1 152041649 152041649 G C SNP LOC343052 XR_017021 human genbank 54_36p +1 model rna NULL NULL 0.003 - - - no_errors P2RY1 5028 genome.wustl.edu 36 3 154036615 154036615 + Silent SNP C C A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 3 154036615 154036615 C A SNP P2RY1 NM_002563 human genbank 54_36p +1 reviewed silent c.354 p.I118 1.000 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors GPD2 2820 genome.wustl.edu 36 2 157115492 157115492 + Missense_Mutation SNP C C A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 2 157115492 157115492 C A SNP GPD2 NM_000408 human genbank 54_36p +1 validated missense c.959 p.P320H 1.000 superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO,PatternScan_FAD_G3PDH_1,superfamily_FAD-linked reductases C-terminal domain,PatternScan_FAD_G3PDH_2,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1 - no_errors CCNL1 57018 genome.wustl.edu 36 3 158348847 158348847 + Silent SNP C C T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 3 158348847 158348847 C T SNP CCNL1 NM_020307 human genbank 54_36p -1 validated silent c.1458 p.K486 1.000 NULL HMMPfam_Cyclin_N,superfamily_Cyclin-like,HMMSmart_SM00385 - no_errors ATP1A4 480 genome.wustl.edu 36 1 158409994 158409994 + Splice_Site SNP G G A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 1 158409994 158409994 G A SNP ATP1A4 NM_144699 human genbank 54_36p +1 reviewed splice_site c.1855-1 e13-1 1.000 - - - no_errors ENSG00000196285 0 genome.wustl.edu 36 2 175293029 175293029 + Missense_Mutation SNP C C T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 2 175293029 175293029 C T SNP ENSG00000196285 ENST00000375183 human ensembl 54_36p +1 known missense c.148 p.R50C 0.954 superfamily_Histone-fold,HMMSmart_SM00428 superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2 - no_errors TTN 7273 genome.wustl.edu 36 2 179306817 179306817 + Missense_Mutation SNP C C T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 2 179306817 179306817 C T SNP TTN ENST00000375038 human ensembl 54_36p -1 known missense c.11812 p.G3938R 1.000 superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408 superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR - no_errors ATP13A5 344905 genome.wustl.edu 36 3 194535532 194535532 + Missense_Mutation SNP T T A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 3 194535532 194535532 T A SNP ATP13A5 NM_198505 human genbank 54_36p -1 provisional missense c.994 p.M332L 0.011 superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653 superfamily_SSF81665,HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,superfamily_SSF56784 - no_errors BZW1 9689 genome.wustl.edu 36 2 201388443 201388443 + Missense_Mutation SNP G G A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 2 201388443 201388443 G A SNP BZW1 NM_014670 human genbank 54_36p +1 validated missense c.199 p.A67T 1.000 NULL superfamily_ARM-type_fold,HMMPfam_W2 - no_errors MAP2 4133 genome.wustl.edu 36 2 210266160 210266160 + Missense_Mutation SNP G G T novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 2 210266160 210266160 G T SNP MAP2 NM_002374 human genbank 54_36p +1 reviewed missense c.1021 p.A341S 0.078 NULL HMMPfam_RII_binding_1,HMMPfam_MAP2_projctn,HMMPfam_Tubulin-binding,PatternScan_TAU_MAP - no_errors ESRRG 2104 genome.wustl.edu 36 1 214917178 214917178 + Missense_Mutation SNP G G A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 1 214917178 214917178 G A SNP ESRRG NM_001438 human genbank 54_36p -1 validated missense c.335 p.P112L 1.000 NULL superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00399,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep - no_errors LIN9 286826 genome.wustl.edu 36 1 224540716 224540716 + Silent SNP T T A novel unknown TCGA-61-1906-01A-01W-0639-09 TCGA-61-1906-11A-01W-0640-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e3d5139f-2e19-4fdc-841b-3f17026612d3 47f0b411-30a1-4a8b-a1d4-946e5e68728c 1 224540716 224540716 T A SNP LIN9 NM_173083 human genbank 54_36p -1 provisional silent c.513 p.T171 0.989 HMMPfam_DIRP HMMPfam_DIRP - no_errors