Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
NME4	4833	genome.wustl.edu	36	16	389125	389125	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	16	389125	389125	G	A	SNP	NME4	NM_005009	human	genbank	54_36p	+1	validated	splice_site	c.225+1	e2+1	1.000	-	-	-	no_errors
UBXN6	80700	genome.wustl.edu	36	19	4403483	4403483	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	19	4403483	4403483	C	A	SNP	UBXN6	NM_025241	human	genbank	54_36p	-1	provisional	nonsense	c.319	p.E107*	0.200	NULL	HMMPfam_PUB,HMMSmart_SM00580,superfamily_Ubiquitin-like,HMMSmart_SM00166,HMMPfam_UBX	-	no_errors
STS	412	genome.wustl.edu	36	X	7278262	7278262	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	X	7278262	7278262	A	G	SNP	STS	NM_000351	human	genbank	54_36p	+1	reviewed	missense	c.1712	p.Q571R	0.940	superfamily_Alkaline_phosphatase_core	superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
CD163L1	283316	genome.wustl.edu	36	12	7476449	7476449	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	12	7476449	7476449	G	A	SNP	CD163L1	NM_174941	human	genbank	54_36p	-1	reviewed	missense	c.596	p.P199L	0.784	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517839	7517839	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	17	7517839	7517839	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.824	p.C275S	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
APOBEC1	339	genome.wustl.edu	36	12	7696622	7696622	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	12	7696622	7696622	C	T	SNP	APOBEC1	NM_001644	human	genbank	54_36p	-1	reviewed	missense	c.121	p.E41K	0.642	HMMPfam_APOBEC_N	HMMPfam_APOBEC_N,superfamily_Cytidine_deaminase-like,PatternScan_CYT_DCMP_DEAMINASES,HMMPfam_APOBEC_C	-	no_errors
ERI1	90459	genome.wustl.edu	36	8	8913285	8913285	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	8	8913285	8913285	G	T	SNP	ERI1	NM_153332	human	genbank	54_36p	+1	validated	missense	c.651	p.K217N	1.000	superfamily_RNaseH_fold,HMMSmart_EXOIII,HMMPfam_Exonuc_X-T	HMMPfam_SAP,HMMSmart_SAP,superfamily_RNaseH_fold,HMMSmart_EXOIII,HMMPfam_Exonuc_X-T	-	no_errors
LOC100132755	0	genome.wustl.edu	36	Y	10647825	10647825	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	Y	10647825	10647825	T	C	SNP	LOC100132755	XM_001713806	human	genbank	54_36p	+1	model	missense	c.20	p.I7T	1.000	NULL	NULL	-	no_errors
CARM1	10498	genome.wustl.edu	36	19	10883931	10883931	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	19	10883931	10883931	C	G	SNP	CARM1	NM_199141	human	genbank	54_36p	+1	validated	missense	c.630	p.I210M	1.000	superfamily_SSF53335,HMMPfam_PrmA	superfamily_SSF53335,HMMPfam_PrmA	-	no_errors
CARM1	10498	genome.wustl.edu	36	19	10891271	10891271	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	19	10891271	10891271	G	A	SNP	CARM1	NM_199141	human	genbank	54_36p	+1	validated	missense	c.1021	p.D341N	1.000	superfamily_SSF53335	HMMPfam_PrmA,superfamily_SSF53335	-	no_errors
PTCHD2	57540	genome.wustl.edu	36	1	11484060	11484060	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	11484060	11484060	G	A	SNP	PTCHD2	NM_020780	human	genbank	54_36p	+1	validated	missense	c.424	p.D142N	0.938	NULL	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13976470	13976470	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	5	13976470	13976470	G	A	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	silent	c.357	p.N119	0.938	NULL	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
TRIO	7204	genome.wustl.edu	36	5	14422614	14422614	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	5	14422614	14422614	G	C	SNP	TRIO	NM_007118	human	genbank	54_36p	+1	validated	missense	c.3198	p.Q1066H	1.000	NULL	superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
NRIP1	8204	genome.wustl.edu	36	21	15259300	15259300	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	21	15259300	15259300	G	C	SNP	NRIP1	NM_003489	human	genbank	54_36p	-1	reviewed	missense	c.3085	p.L1029V	0.724	NULL	NULL	-	no_errors
RPS6KA3	6197	genome.wustl.edu	36	X	20095754	20095754	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	X	20095754	20095754	T	C	SNP	RPS6KA3	NM_004586	human	genbank	54_36p	-1	reviewed	silent	c.1476	p.V492	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors
MBOAT1	154141	genome.wustl.edu	36	6	20259396	20259396	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	6	20259396	20259396	T	A	SNP	MBOAT1	NM_001080480	human	genbank	54_36p	-1	provisional	nonsense	c.322	p.R108*	1.000	NULL	HMMPfam_MBOAT	-	no_errors
RTDR1	27156	genome.wustl.edu	36	22	21806296	21806296	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	22	21806296	21806296	A	G	SNP	RTDR1	NM_014433	human	genbank	54_36p	-1	reviewed	missense	c.338	p.L113P	0.992	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_Arm	-	no_errors
ELAVL2	1993	genome.wustl.edu	36	9	23682735	23682735	+	Silent	SNP	T	T	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	9	23682735	23682735	T	A	SNP	ELAVL2	NM_004432	human	genbank	54_36p	-1	validated	silent	c.900	p.G300	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
CASC1	55259	genome.wustl.edu	36	12	25191305	25191305	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	12	25191305	25191305	G	C	SNP	CASC1	NM_018272	human	genbank	54_36p	-1	validated	missense	c.586	p.Q196E	1.000	NULL	NULL	-	no_errors
HIST1H1C	3006	genome.wustl.edu	36	6	26164516	26164516	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	6	26164516	26164516	C	T	SNP	HIST1H1C	NM_005319	human	genbank	54_36p	-1	reviewed	silent	c.120	p.V40	1.000	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Linker_histone"	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Linker_histone"	-	no_errors
HOXA2	3199	genome.wustl.edu	36	7	27107596	27107596	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	7	27107596	27107596	G	A	SNP	HOXA2	NM_006735	human	genbank	54_36p	-1	reviewed	silent	c.405	p.I135	0.994	superfamily_Homeodomain_like	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
LIG3	3980	genome.wustl.edu	36	17	30352444	30352444	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	17	30352444	30352444	C	A	SNP	LIG3	NM_013975	human	genbank	54_36p	+1	reviewed	missense	c.2387	p.T796K	0.996	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-PARP,PatternScan_PARP_ZN_FINGER_1,HMMPfam_DNA_ligase_A_N,superfamily_DNA ligase/mRNA capping enzyme catalytic domain,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A1,PatternScan_DNA_LIGASE_A2,HMMPfam_DNA_ligase_A_C,superfamily_BRCT domain,HMMSmart_SM00292	-	no_errors
BAT2	7916	genome.wustl.edu	36	6	31701284	31701284	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	6	31701284	31701284	C	G	SNP	BAT2	NM_080686	human	genbank	54_36p	+1	reviewed	missense	c.676	p.H226D	0.875	NULL	HMMPfam_BAT2_N	-	no_errors
LOC100130233	0	genome.wustl.edu	36	X	32134282	32134282	+	RNA	SNP	G	G	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	X	32134282	32134282	G	T	SNP	LOC100130233	XR_038856	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.994	-	-	-	pseudogene
TADA2L	6871	genome.wustl.edu	36	17	32911109	32911109	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	17	32911109	32911109	C	T	SNP	TADA2L	NM_001488	human	genbank	54_36p	+1	reviewed	missense	c.1241	p.A414V	0.999	HMMPfam_SWIRM	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMPfam_SWIRM	-	no_errors
HNF1B	6928	genome.wustl.edu	36	17	33133292	33133292	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	17	33133292	33133292	G	A	SNP	HNF1B	NM_000458	human	genbank	54_36p	-1	validated	missense	c.1556	p.P519L	1.000	HMMPfam_HNF-1B_C	superfamily_Dimerization cofactor of HNF-1 alpha,HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_HNF-1B_C	-	no_errors
KIAA0319L	79932	genome.wustl.edu	36	1	35744799	35744799	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	35744799	35744799	C	A	SNP	KIAA0319L	NM_024874	human	genbank	54_36p	-1	reviewed	splice_site	c.666+1	e2+1	1.000	-	-	-	no_errors
C5orf42	65250	genome.wustl.edu	36	5	37219433	37219433	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	5	37219433	37219433	G	T	SNP	C5orf42	NM_023073	human	genbank	54_36p	-1	predicted	missense	c.1250	p.P417H	1.000	NULL	NULL	-	no_errors
BRCA1	672	genome.wustl.edu	36	17	38499653	38499653	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	17	38499653	38499653	A	C	SNP	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	nonsense	c.1421	p.L474*	0.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain	-	no_errors
MPP2	4355	genome.wustl.edu	36	17	39315373	39315373	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	17	39315373	39315373	C	T	SNP	MPP2	NM_005374	human	genbank	54_36p	-1	reviewed	silent	c.486	p.L162	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	HMMSmart_SM00569,HMMPfam_L27,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin	-	no_errors
ITGA2B	3674	genome.wustl.edu	36	17	39811589	39811589	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	17	39811589	39811589	C	T	SNP	ITGA2B	NM_000419	human	genbank	54_36p	-1	reviewed	missense	c.1894	p.D632N	1.000	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
HNF4A	3172	genome.wustl.edu	36	20	42468148	42468148	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	20	42468148	42468148	C	G	SNP	HNF4A	NM_000457	human	genbank	54_36p	+1	reviewed	missense	c.152	p.P51R	0.993	NULL	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
MAP4K1	11184	genome.wustl.edu	36	19	43793544	43793544	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	19	43793544	43793544	G	T	SNP	MAP4K1	NM_007181	human	genbank	54_36p	-1	validated	missense	c.797	p.T266N	0.988	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,HMMSmart_CNH,HMMPfam_CNH	-	no_errors
ANO6	196527	genome.wustl.edu	36	12	44101150	44101150	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	12	44101150	44101150	G	T	SNP	ANO6	NM_001025356	human	genbank	54_36p	+1	validated	missense	c.2247	p.M749I	1.000	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
C21orf2	755	genome.wustl.edu	36	21	44576301	44576301	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	21	44576301	44576301	C	T	SNP	C21orf2	NM_004928	human	genbank	54_36p	-1	validated	missense	c.398	p.R133H	0.924	superfamily_Outer arm dynein light chain 1	superfamily_Outer arm dynein light chain 1,HMMSmart_SM00446	-	no_errors
RAMP3	10268	genome.wustl.edu	36	7	45189430	45189430	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	7	45189430	45189430	C	T	SNP	RAMP3	NM_005856	human	genbank	54_36p	+1	reviewed	missense	c.341	p.P114L	1.000	HMMPfam_RAMP	HMMPfam_RAMP	-	no_errors
MRO	83876	genome.wustl.edu	36	18	46585560	46585560	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	18	46585560	46585560	T	G	SNP	MRO	NM_031939	human	genbank	54_36p	-1	reviewed	missense	c.391	p.I131L	0.959	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
GPR111	222611	genome.wustl.edu	36	6	47757618	47757618	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	6	47757618	47757618	G	A	SNP	GPR111	NM_153839	human	genbank	54_36p	+1	validated	missense	c.1160	p.G387D	1.000	NULL	HMMPfam_GPS,HMMPfam_7tm_2	-	no_errors
NOD2	64127	genome.wustl.edu	36	16	49291259	49291259	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	16	49291259	49291259	C	A	SNP	NOD2	NM_022162	human	genbank	54_36p	+1	reviewed	missense	c.433	p.L145I	0.993	superfamily_DEATH domain,HMMPfam_CARD	HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1	-	no_errors
C10orf71	118461	genome.wustl.edu	36	10	50202790	50202790	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	10	50202790	50202790	T	A	SNP	C10orf71	ENST00000374144	human	ensembl	54_36p	+1	known	missense	c.2194	p.S732T	1.000	NULL	PatternScan_SUGAR_TRANSPORT_1	-	no_errors
LOC645693	645693	genome.wustl.edu	36	15	51016503	51016503	+	RNA	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	15	51016503	51016503	C	T	SNP	LOC645693	XR_017498	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MC3R	4159	genome.wustl.edu	36	20	54258225	54258225	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	20	54258225	54258225	C	T	SNP	MC3R	NM_019888	human	genbank	54_36p	+1	reviewed	missense	c.1030	p.R344C	1.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DST	667	genome.wustl.edu	36	6	56591829	56591829	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	6	56591829	56591829	C	T	SNP	DST	NM_001723	human	genbank	54_36p	-1	reviewed	silent	c.4962	p.A1654	0.752	NULL	HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin	-	no_errors
VPS13C	54832	genome.wustl.edu	36	15	60044305	60044305	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	15	60044305	60044305	G	A	SNP	VPS13C	NM_020821	human	genbank	54_36p	-1	validated	silent	c.3099	p.V1033	0.996	NULL	HMMPfam_DUF1162	-	no_errors
C1orf87	127795	genome.wustl.edu	36	1	60248671	60248671	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	60248671	60248671	C	A	SNP	C1orf87	NM_152377	human	genbank	54_36p	-1	predicted	missense	c.1173	p.L391F	0.018	NULL	superfamily_EF-hand	-	no_errors
CD5	921	genome.wustl.edu	36	11	60645729	60645729	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	11	60645729	60645729	C	A	SNP	CD5	NM_014207	human	genbank	54_36p	+1	validated	silent	c.876	p.R292	0.706	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	-	no_errors
NLRP5	126206	genome.wustl.edu	36	19	61256870	61256870	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	19	61256870	61256870	C	T	SNP	NLRP5	NM_153447	human	genbank	54_36p	+1	reviewed	silent	c.3126	p.I1042	0.006	superfamily_RNI-like,HMMSmart_SM00368	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
USP34	9736	genome.wustl.edu	36	2	61486661	61486661	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	2	61486661	61486661	G	A	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	nonsense	c.238	p.Q80*	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61832264	61832264	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	15	61832264	61832264	A	C	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	missense	c.1848	p.I616M	1.000	superfamily_RCC1/BLIP-II	superfamily_RCC1/BLIP-II,HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00449,HMMPfam_SPRY,PatternScan_PHOSPHOPANTETHEINE,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,PatternScan_ARGINASE_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
L1TD1	54596	genome.wustl.edu	36	1	62449171	62449171	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	62449171	62449171	T	G	SNP	L1TD1	NM_019079	human	genbank	54_36p	+1	validated	missense	c.2137	p.Y713D	0.000	HMMPfam_Transposase_22	HMMPfam_Transposase_22	-	no_errors
L1TD1	54596	genome.wustl.edu	36	1	62449580	62449580	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	62449580	62449580	A	G	SNP	L1TD1	NM_019079	human	genbank	54_36p	+1	validated	missense	c.2546	p.Y849C	0.001	HMMPfam_Transposase_22	HMMPfam_Transposase_22	-	no_errors
CDH11	1009	genome.wustl.edu	36	16	63563045	63563045	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	16	63563045	63563045	A	C	SNP	CDH11	NM_001797	human	genbank	54_36p	-1	reviewed	missense	c.1580	p.F527C	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
KCTD19	146212	genome.wustl.edu	36	16	65912162	65912162	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	16	65912162	65912162	G	C	SNP	KCTD19	NM_001100915	human	genbank	54_36p	-1	provisional	nonsense	c.131	p.S44*	0.508	superfamily_BTB/POZ_fold,HMMPfam_K_tetra	superfamily_BTB/POZ_fold,HMMPfam_K_tetra	-	no_errors
LRIG1	26018	genome.wustl.edu	36	3	66513796	66513796	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	3	66513796	66513796	C	A	SNP	LRIG1	NM_015541	human	genbank	54_36p	-1	validated	missense	c.2950	p.A984S	0.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
TMCO7	79613	genome.wustl.edu	36	16	67519078	67519078	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	16	67519078	67519078	G	A	SNP	TMCO7	NM_024562	human	genbank	54_36p	+1	validated	missense	c.2234	p.R745H	1.000	superfamily_ARM repeat,HMMPfam_DUF2435	superfamily_ARM repeat,HMMPfam_DUF2435,HMMPfam_HEAT,HMMPfam_DUF2411	-	no_errors
SAPS3	55291	genome.wustl.edu	36	11	68124424	68124424	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	11	68124424	68124424	C	G	SNP	SAPS3	NM_018312	human	genbank	54_36p	+1	validated	missense	c.1838	p.T613R	0.973	NULL	HMMPfam_SAPS	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69483791	69483791	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	16	69483791	69483791	C	T	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.9388	p.E3130K	0.039	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ST6GALNAC1	55808	genome.wustl.edu	36	17	72137032	72137032	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	17	72137032	72137032	G	A	SNP	ST6GALNAC1	NM_018414	human	genbank	54_36p	-1	validated	missense	c.488	p.T163M	0.001	NULL	HMMPfam_Glyco_transf_29	-	no_errors
GLG1	2734	genome.wustl.edu	36	16	73060432	73060432	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	16	73060432	73060432	G	A	SNP	GLG1	NM_012201	human	genbank	54_36p	-1	validated	silent	c.2349	p.T783	0.300	HMMPfam_Cys_rich_FGFR	HMMPfam_Cys_rich_FGFR	-	no_errors
LOC653079	653079	genome.wustl.edu	36	12	75578585	75578585	+	RNA	SNP	T	T	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	12	75578585	75578585	T	C	SNP	LOC653079	XR_016115	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ZDHHC17	23390	genome.wustl.edu	36	12	75768811	75768811	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	12	75768811	75768811	T	C	SNP	ZDHHC17	NM_015336	human	genbank	54_36p	+1	validated	missense	c.1814	p.L605P	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_zf-DHHC	-	no_errors
ARD1B	84779	genome.wustl.edu	36	4	80465511	80465511	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	4	80465511	80465511	C	T	SNP	ARD1B	NM_032693	human	genbank	54_36p	-1	validated	missense	c.545	p.G182D	0.000	NULL	superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1	-	no_errors
SEMA3E	9723	genome.wustl.edu	36	7	82867367	82867367	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	7	82867367	82867367	T	A	SNP	SEMA3E	NM_012431	human	genbank	54_36p	-1	provisional	missense	c.1279	p.T427S	0.944	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
DNHL1	284944	genome.wustl.edu	36	2	84654189	84654189	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	2	84654189	84654189	C	A	SNP	DNHL1	ENST00000237449	human	ensembl	54_36p	+1	known	missense	c.1891	p.L631I	1.000	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
PICALM	8301	genome.wustl.edu	36	11	85363495	85363495	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	11	85363495	85363495	T	A	SNP	PICALM	NM_007166	human	genbank	54_36p	-1	validated	missense	c.1848	p.Q616H	0.998	NULL	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273,superfamily_GAT-like domain	-	no_errors
RGR	5995	genome.wustl.edu	36	10	86002636	86002636	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	10	86002636	86002636	C	T	SNP	RGR	NM_002921	human	genbank	54_36p	+1	reviewed	silent	c.414	p.F138	0.721	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_OPSIN	-	no_errors
LOC729843	729843	genome.wustl.edu	36	2	87010745	87010745	+	RNA	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	2	87010745	87010745	G	A	SNP	LOC729843	XR_016056	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
KCNK10	54207	genome.wustl.edu	36	14	87724170	87724170	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	14	87724170	87724170	T	C	SNP	KCNK10	NM_138317	human	genbank	54_36p	-1	reviewed	missense	c.905	p.K302R	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	-	no_errors
NPAS2	4862	genome.wustl.edu	36	2	100887651	100887651	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	2	100887651	100887651	G	C	SNP	NPAS2	NM_002518	human	genbank	54_36p	+1	reviewed	missense	c.3	p.M1I	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	-	no_errors
TBC1D8	11138	genome.wustl.edu	36	2	101018924	101018924	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	2	101018924	101018924	G	T	SNP	TBC1D8	NM_001102426	human	genbank	54_36p	-1	validated	missense	c.1546	p.L516I	1.000	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand	-	no_errors
PAH	5053	genome.wustl.edu	36	12	101773228	101773228	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	12	101773228	101773228	G	A	SNP	PAH	NM_000277	human	genbank	54_36p	-1	reviewed	silent	c.522	p.I174	0.993	superfamily_Aaa_hydroxylase,HMMPfam_Biopterin_H	superfamily_SSF55021,HMMPfam_ACT,superfamily_Aaa_hydroxylase,HMMPfam_Biopterin_H,PatternScan_BIOPTERIN_HYDROXYL	-	no_errors
SENP7	57337	genome.wustl.edu	36	3	102660489	102660489	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	3	102660489	102660489	C	T	SNP	SENP7	NM_020654	human	genbank	54_36p	-1	validated	missense	c.284	p.R95K	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_Peptidase_C48	-	no_errors
MGEA5	10724	genome.wustl.edu	36	10	103553601	103553601	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	10	103553601	103553601	C	T	SNP	MGEA5	NM_012215	human	genbank	54_36p	-1	validated	missense	c.917	p.R306Q	1.000	HMMPfam_NAGidase	HMMPfam_NAGidase,superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
IGHD	0	genome.wustl.edu	36	14	105378599	105378599	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	14	105378599	105378599	G	A	SNP	IGHD	ENST00000390556	human	ensembl	54_36p	-1	known	nonsense	c.484	p.R162*	0.009	NULL	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC,HMMPfam_ig	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CAPN6	827	genome.wustl.edu	36	X	110380866	110380866	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	X	110380866	110380866	C	T	SNP	CAPN6	NM_014289	human	genbank	54_36p	-1	reviewed	missense	c.1093	p.D365N	0.992	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2	PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
LOC285412	285412	genome.wustl.edu	36	4	113597093	113597093	+	RNA	SNP	G	G	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	4	113597093	113597093	G	C	SNP	LOC285412	XR_017405	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ANK2	287	genome.wustl.edu	36	4	114472581	114472581	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	4	114472581	114472581	C	T	SNP	ANK2	NM_001148	human	genbank	54_36p	+1	reviewed	missense	c.3130	p.L1044F	1.000	HMMPfam_ZU5	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
PARP9	83666	genome.wustl.edu	36	3	123729939	123729939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	3	123729939	123729939	G	A	SNP	PARP9	NM_031458	human	genbank	54_36p	-1	provisional	missense	c.2527	p.P843S	0.000	NULL	superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_ADP-ribosylation,HMMPfam_PARP	-	no_errors
OR8B12	219858	genome.wustl.edu	36	11	123918083	123918083	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	11	123918083	123918083	G	T	SNP	OR8B12	NM_001005195	human	genbank	54_36p	-1	provisional	missense	c.678	p.H226Q	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FAM102A	399665	genome.wustl.edu	36	9	129750487	129750487	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	9	129750487	129750487	C	A	SNP	FAM102A	NM_001035254	human	genbank	54_36p	-1	validated	nonsense	c.442	p.G148*	1.000	HMMPfam_Eeig1	HMMPfam_Eeig1	-	no_errors
GPR148	344561	genome.wustl.edu	36	2	131203741	131203741	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	2	131203741	131203741	C	G	SNP	GPR148	NM_207364	human	genbank	54_36p	+1	provisional	missense	c.547	p.L183V	0.001	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
COL6A6	131873	genome.wustl.edu	36	3	131772840	131772840	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	3	131772840	131772840	G	A	SNP	COL6A6	NM_001102608	human	genbank	54_36p	+1	provisional	missense	c.2890	p.D964N	0.753	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors
LOC100133263	0	genome.wustl.edu	36	3	132584782	132584782	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	3	132584782	132584782	C	T	SNP	LOC100133263	XM_001717995	human	genbank	54_36p	-1	model	missense	c.88	p.A30T	0.008	NULL	NULL	-	no_errors
ATP11C	286410	genome.wustl.edu	36	X	138736630	138736630	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	X	138736630	138736630	G	C	SNP	ATP11C	NM_173694	human	genbank	54_36p	-1	validated	missense	c.55	p.R19G	0.988	NULL	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
CEP70	80321	genome.wustl.edu	36	3	139710023	139710023	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	3	139710023	139710023	T	G	SNP	CEP70	NM_024491	human	genbank	54_36p	-1	validated	missense	c.998	p.E333A	0.609	NULL	NULL	-	no_errors
PCDHGA6	56109	genome.wustl.edu	36	5	140735753	140735753	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	5	140735753	140735753	A	G	SNP	PCDHGA6	NM_018919	human	genbank	54_36p	+1	reviewed	missense	c.1919	p.Q640R	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
LOC727820	727820	genome.wustl.edu	36	1	142535587	142535587	+	RNA	SNP	G	G	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	142535587	142535587	G	C	SNP	LOC727820	XR_041980	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.002	-	-	-	no_errors
CNGA2	1260	genome.wustl.edu	36	X	150663505	150663505	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	X	150663505	150663505	C	A	SNP	CNGA2	NM_005140	human	genbank	54_36p	+1	validated	missense	c.1874	p.A625D	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors
PLCH1	23007	genome.wustl.edu	36	3	156754637	156754637	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	3	156754637	156754637	T	C	SNP	PLCH1	NM_014996	human	genbank	54_36p	-1	validated	missense	c.1022	p.H341R	1.000	HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
F5	2153	genome.wustl.edu	36	1	167778425	167778425	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	167778425	167778425	C	A	SNP	F5	NM_000130	human	genbank	54_36p	-1	reviewed	missense	c.2527	p.D843Y	0.001	NULL	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_LSPR,superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors
THBS2	7058	genome.wustl.edu	36	6	169367349	169367349	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	6	169367349	169367349	G	A	SNP	THBS2	NM_003247	human	genbank	54_36p	-1	reviewed	silent	c.2589	p.D863	1.000	superfamily_SSF103647,HMMPfam_TSP_3	PatternScan_EGF_1,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_CA,HMMPfam_EGF,PatternScan_EGF_2,superfamily_SSF103647,HMMPfam_TSP_3,HMMPfam_TSP_C	-	no_errors
TNR	7143	genome.wustl.edu	36	1	173559131	173559131	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	173559131	173559131	C	G	SNP	TNR	NM_003285	human	genbank	54_36p	-1	validated	missense	c.4062	p.Q1354H	1.000	NULL	PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
NMNAT2	23057	genome.wustl.edu	36	1	181520504	181520504	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	181520504	181520504	A	G	SNP	NMNAT2	NM_015039	human	genbank	54_36p	-1	reviewed	missense	c.493	p.C165R	1.000	superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2	superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2	-	no_errors
TROVE2	6738	genome.wustl.edu	36	1	191305253	191305253	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	191305253	191305253	G	A	SNP	TROVE2	NM_004600	human	genbank	54_36p	+1	validated	missense	c.446	p.R149Q	1.000	HMMPfam_TROVE	HMMPfam_TROVE	-	no_errors
IPO9	55705	genome.wustl.edu	36	1	200108661	200108661	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	200108661	200108661	G	T	SNP	IPO9	NM_018085	human	genbank	54_36p	+1	validated	nonsense	c.2659	p.E887*	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_IBN_N	-	no_errors
ATIC	471	genome.wustl.edu	36	2	215909029	215909029	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	2	215909029	215909029	A	G	SNP	ATIC	NM_004044	human	genbank	54_36p	+1	validated	silent	c.1035	p.G345	0.953	HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly	superfamily_SSF52335,HMMPfam_MGS,HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly	-	no_errors
IRF2BP2	359948	genome.wustl.edu	36	1	232810028	232810028	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	232810028	232810028	C	T	SNP	IRF2BP2	NM_182972	human	genbank	54_36p	-1	reviewed	silent	c.1242	p.P414	1.000	NULL	NULL	-	no_errors
C1orf101	257044	genome.wustl.edu	36	1	242813807	242813807	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	242813807	242813807	T	G	SNP	C1orf101	NM_173807	human	genbank	54_36p	+1	validated	silent	c.2028	p.L676	0.000	NULL	NULL	-	no_errors
CLEC12B	387837	genome.wustl.edu	36	12	10059576	10059592	+	Frame_Shift_Del	DEL	TGTTCCCTCTCCATCCT	TGTTCCCTCTCCATCCT	-	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	TGTTCCCTCTCCATCCT	TGTTCCCTCTCCATCCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	12	10059576	10059592	TGTTCCCTCTCCATCCT	-	DEL	CLEC12B	NM_205852	human	genbank	54_36p	+1	validated	frame_shift_del	c.663_679	p.P223fs	0.006:0.000:0.003:0.015:0.638:0.697:0.763:0.881:0.931:0.933:0.913:0.851:0.670:0.661:0.663:0.701:0.712	superfamily_C-type_lectin_fold,HMMSmart_CLECT	superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMPfam_Lectin_C	(deletion:cds_exon[10059478,10059612])	no_errors
SNORD49A	26800	genome.wustl.edu	36	17	16284088	16284091	+	RNA	DEL	TCAC	TCAC	-	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	TCAC	TCAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	17	16284088	16284091	TCAC	-	DEL	SNORD49A	NR_002744	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.002:0.002:0.002:0.005	-	-	(deletion:rna[16284075,16284145])	no_errors
GTF3C1	2975	genome.wustl.edu	36	16	27395337	27395352	+	Frame_Shift_Del	DEL	TGAAGCACCAGAAAGT	TGAAGCACCAGAAAGT	-	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	TGAAGCACCAGAAAGT	TGAAGCACCAGAAAGT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	16	27395337	27395352	TGAAGCACCAGAAAGT	-	DEL	GTF3C1	NM_001520	human	genbank	54_36p	-1	validated	frame_shift_del	c.4289_4274	p.H1425fs	0.998:0.919:0.873:0.995:0.996:0.995:1.000:1.000:1.000:1.000:0.998:0.983:0.992:0.996:0.999:1.000	NULL	HMMPfam_B-block_TFIIIC	(deletion:cds_exon[27395273,27395366])	no_errors
LOC441964	441964	genome.wustl.edu	36	21	38541315	38541318	+	Frame_Shift_Del	DEL	TGGA	TGGA	-	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	TGGA	TGGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	21	38541315	38541318	TGGA	-	DEL	LOC441964	XM_497783	human	genbank	54_36p	-1	model	frame_shift_del	c.676_673	p.S225fs	0.001:0.001:0.001:0.001	NULL	NULL	(deletion:cds_exon[38540755,38541438])	no_errors
PCTK2	5128	genome.wustl.edu	36	12	95212993	95213005	+	Frame_Shift_Del	DEL	GCAATATGCCAAA	GCAATATGCCAAA	-	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	GCAATATGCCAAA	GCAATATGCCAAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	12	95212993	95213005	GCAATATGCCAAA	-	DEL	PCTK2	NM_002595	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.912_900	p.L301fs	1.000:1.000:1.000:1.000:1.000:1.000:0.990:1.000:1.000:1.000:1.000:1.000:0.999	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[95212908,95213031])	no_errors
LOC375010	375010	genome.wustl.edu	36	1	141655113	141655113	+	RNA	DEL	C	C	-	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	1	141655113	141655113	C	-	DEL	LOC375010	XR_041271	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.085	-	-	(deletion:rna[141654484,141655403])	pseudogene
OSTalpha	200931	genome.wustl.edu	36	3	197438955	197438977	+	Frame_Shift_Del	DEL	TGGTCTCTGGATCCCTCGTTCCC	TGGTCTCTGGATCCCTCGTTCCC	-	novel	unknown	TCGA-61-1914-01A-01W-0639-09	TCGA-61-1914-11A-01W-0640-09	TGGTCTCTGGATCCCTCGTTCCC	TGGTCTCTGGATCCCTCGTTCCC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	41e59680-da3c-45d9-8a36-59596743d03a	75201ee4-2590-4b96-8bcf-e9e82aa0457d	3	197438955	197438977	TGGTCTCTGGATCCCTCGTTCCC	-	DEL	OSTalpha	NM_152672	human	genbank	54_36p	+1	validated	frame_shift_del	c.312_334	p.L106fs	1.000:1.000:1.000:0.990:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.995:0.996:0.989:0.868:0.872:0.860:0.515:0.599:0.884:0.900:0.882	NULL	NULL	(deletion:cds_exon[197438932,197439005])	no_errors