Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CEP164	22897	broad.mit.edu	37	11	117280555	117280555	+	Missense_Mutation	SNP	T	T	G			TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr11:117280555T>G	ENST00000278935.3	+	30	4117	c.3970T>G	c.(3970-3972)Tta>Gta	p.L1324V	CEP164_ENST00000533706.1_3'UTR	NM_014956.4	NP_055771.4	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1324					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				breast(3)|central_nervous_system(1)|kidney(7)|large_intestine(12)|lung(18)|ovary(3)|prostate(3)	47	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		GTTCTCAGCCTTATCATCTGC	0.657000													12	100					0	0	1	0	0
UGT2B11	10720	broad.mit.edu	37	4	70079903	70079903	+	Missense_Mutation	SNP	T	T	C	rs147658117		TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr4:70079903T>C	ENST00000446444.1	-	1	546	c.538A>G	c.(538-540)Att>Gtt	p.I180V	RP11-704M14.1_ENST00000505646.1_RNA|RP11-704M14.1_ENST00000504301.1_RNA	NM_001073.1	NP_001064.1	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family, polypeptide B11	180					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(9)|lung(18)|ovary(1)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)	42						TGCCTTTCAATTGTGTAGCCA	0.428000													4	90					0	0	1	0	0
HMGB3	3149	broad.mit.edu	37	X	150156360	150156360	+	Silent	SNP	G	G	A			TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chrX:150156360G>A	ENST00000325307.7	+	5	672	c.576G>A	c.(574-576)gaG>gaA	p.E192E	HMGB3_ENST00000448905.2_Silent_p.E192E	NM_005342.2	NP_005333.2	O15347	HMGB3_HUMAN	high mobility group box 3	192	Asp/Glu-rich (acidic).				DNA recombination|multicellular organismal development	chromosome|nucleus	DNA bending activity|double-stranded DNA binding	p.E192E(1)		endometrium(3)|large_intestine(2)|lung(2)|skin(1)	8	Acute lymphoblastic leukemia(192;6.56e-05)					aggaagaagaggaggaggagg	0.443000													4	42					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145296373	145296373	+	Missense_Mutation	SNP	G	G	T	rs3969711		TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr1:145296373G>T	ENST00000342960.5	+	3	330	c.295G>T	c.(295-297)Gtt>Ttt	p.V99F	NBPF10_ENST00000369338.1_Intron|NBPF10_ENST00000369339.2_Intron|RP11-458D21.5_ENST00000468030.1_3'UTR	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	99								p.V99F(1)		NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TAAAGTCCTAGTTCACTCTCA	0.473000													4	179					0.184627	0.184627	1	1	0
GBP1	2633	broad.mit.edu	37	1	89528883	89528883	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr1:89528883C>T	ENST00000370473.4	-	2	254	c.35G>A	c.(34-36)tGc>tAc	p.C12Y		NM_002053.2	NP_002044.2	P32455	GBP1_HUMAN	guanylate binding protein 1, interferon-inducible	12					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			endometrium(7)|kidney(4)|large_intestine(8)|lung(6)|ovary(1)|prostate(1)|skin(2)|urinary_tract(1)	30		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		CTCAATGAGGCACATTGGGCC	0.483000													43	31					0	0	1	0	0
FRG1BP	284802	broad.mit.edu	37	20	29625892	29625892	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr20:29625892T>C	ENST00000278882.3	+	5	516	c.136T>C	c.(136-138)Tat>Cat	p.Y46H	FRG1B_ENST00000439954.2_Missense_Mutation_p.Y51H|FRG1B_ENST00000358464.4_Missense_Mutation_p.Y46H																endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GAAATCTGGCTATGGAAAATA	0.348000													6	95					0	0	1	0	0
KIF13B	23303	broad.mit.edu	37	8	28997654	28997654	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr8:28997654T>C	ENST00000524189.1	-	21	2577	c.2539A>G	c.(2539-2541)Agg>Ggg	p.R847G	CTD-2647L4.1_ENST00000517632.1_RNA|CTD-2647L4.1_ENST00000523661.1_RNA	NM_015254.3	NP_056069.2	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	847					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding			endometrium(6)|kidney(1)|lung(20)|urinary_tract(1)	28		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		CCTGCGATCCTCTCCCCAACA	0.542000													6	10					0	0	1	0	0
GLUD1P7	414212	broad.mit.edu	37	10	48968566	48968566	+	RNA	SNP	A	A	G			TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr10:48968566A>G	ENST00000594520.1	+	0	723																											ACAGGATAACAAACTGGAAAA	0.318000													3	17					0	0	1	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	rs138671696	by1000genomes	TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr17:62968690A>G	ENST00000430983.1	-	0	1554					NR_026903.1																						AAAATTCCACAAGTCTCTTGG	0.373000													4	79					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131639196	131639196	+	Silent	SNP	A	A	G			TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr10:131639196A>G	ENST00000368648.3	-	14	1518	c.1446T>C	c.(1444-1446)aaT>aaC	p.N482N	EBF3_ENST00000355311.5_Silent_p.N491N	NM_001005463.2	NP_001005463.1	Q9H4W6	COE3_HUMAN	early B-cell factor 3	491	Pro/Ser/Thr-rich.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(8)|lung(23)|ovary(1)|pancreas(1)|prostate(1)|skin(1)	44		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		TTCCATATCCATTCATGCTAG	0.562000													13	79					0	0	1	0	0
HOXA11	3207	broad.mit.edu	37	7	27222461	27222462	+	Frame_Shift_Ins	INS	-	-	T			TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr7:27222461_27222462insT	ENST00000006015.3	-	2	966_967	c.895_896insA	c.(895-897)taafs	p.*299fs		NM_005523.5	NP_005514.1	P31270	HXA11_HUMAN	homeobox A11	299					branching involved in ureteric bud morphogenesis|cartilage development involved in endochondral bone morphogenesis|developmental growth|dorsal/ventral pattern formation|mesodermal cell fate specification|positive regulation of cell development|positive regulation of chondrocyte differentiation	protein-DNA complex|transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			NS(1)|breast(1)|endometrium(1)|large_intestine(2)|lung(8)|ovary(1)|skin(2)	16						GTCTCTGTTAATTTTTTTTTCC	0.446			T	NUP98	CML								7	117	---	---	---	---					
TPTE2P1	646405	broad.mit.edu	37	13	25527490	25527491	+	RNA	INS	-	-	AAAAAG			TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr13:25527490_25527491insAAAAAG	ENST00000429698.1	-	0	282																											AGGAAGGTTCTAAAAAAAATTT	0.252													3	5	---	---	---	---					
IGLV3-9	28804	broad.mit.edu	37	22	23161844	23161845	+	RNA	DEL	CC	CC	-	rs72002333		TCGA-WB-A81F-01A-11D-A35I-08	TCGA-WB-A81F-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	357a904e-2c97-4b2d-a3d0-72c749f4d058	76d9f903-9628-44bf-ace7-218726e479e6	g.chr22:23161844_23161845delCC	ENST00000390316.2	+	0	161																											TGCTCATGGTCCCCTGAGGACA	0.554													2	4	---	---	---	---