Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SGCE	8910	hgsc.bcm.edu	36	7	94095606	94095606	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003919	exon3	c.C234T	p.G78G	.	.	.
SOX12	6666	hgsc.bcm.edu	36	20	254702	254702	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006943	exon1	c.A134G	p.N45S	.	.	.
TM9SF1	10548	hgsc.bcm.edu	36	14	23729499	23729499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001014842	exon5	c.C1354T	p.R452W	.	.	.
NID2	22795	hgsc.bcm.edu	36	14	51590746	51590746	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007361	exon4	c.G811A	p.G271S	.	.	.
RPS6KL1	83694	hgsc.bcm.edu	36	14	74447828	74447828	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031464	exon5	c.C447A	p.P149P	.	.	.
CYP46A1	10858	hgsc.bcm.edu	36	14	99252247	99252247	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006668	exon9	c.G865A	p.D289N	.	.	.
USP29	57663	hgsc.bcm.edu	36	19	62333514	62333514	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020903	exon4	c.T1659C	p.S553S	.	.	.
CSMD2	114784	hgsc.bcm.edu	36	1	33874734	33874734	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052896	exon30	c.G4662A	p.P1554P	.	.	.
PLEKHG5	57449	hgsc.bcm.edu	36	1	6452096	6452096	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042664	exon18	c.G1935C	p.G645G	.	.	.
MMP3	4314	hgsc.bcm.edu	36	11	102218770	102218770	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002422	exon2	c.C193T	p.R65X	.	.	.
TECTA	7007	hgsc.bcm.edu	36	11	120533941	120533941	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005422	exon13	c.G4487A	p.R1496H	.	.	.
PIK3C2A	5286	hgsc.bcm.edu	36	11	17147764	17147764	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002645	exon1	c.T101A	p.M34K	.	.	.
SSRP1	6749	hgsc.bcm.edu	36	11	56856817	56856817	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003146	exon6	c.C626T	p.T209I	.	.	.
SASH1	23328	hgsc.bcm.edu	36	6	148896685	148896685	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_015278	exon15	c.T1820A	p.F607Y	.	.	.
GPR31	2853	hgsc.bcm.edu	36	6	167490504	167490504	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005299	exon1	c.G806A	p.S269N	.	.	.
PSME3	10197	hgsc.bcm.edu	36	17	38244267	38244267	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176863	exon7	c.C438A	p.D146E	.	.	.
RUNDC1	146923	hgsc.bcm.edu	36	17	38395978	38395978	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173079	exon4	c.A975G	p.K325K	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.T584C	p.I195T	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.
NDE1	54820	hgsc.bcm.edu	36	16	15698084	15698084	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017668	exon8	c.C813T	p.L271L	.	.	.
CES7	221223	hgsc.bcm.edu	36	16	54465306	54465306	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001143685	exon2	c.C218T	p.T73M	.	.	.
MYL6B	140465	hgsc.bcm.edu	36	12	54835481	54835481	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199629	exon5	c.C358A	p.R120R	.	.	.
ADAMTS17	170691	hgsc.bcm.edu	36	15	98411770	98411770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_139057	exon16	c.C2150T	p.S717L	.	.	.
NOP14	8602	hgsc.bcm.edu	36	4	2910360	2910360	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003703	exon18	c.A2570G	p.K857R	.	.	.
CAPN6	827	hgsc.bcm.edu	36	X	110383053	110383053	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014289	exon4	c.A345C	p.E115D	.	.	.
RFTN2	130132	hgsc.bcm.edu	36	2	198204070	198204070	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_144629	exon5	c.C838G	p.L280V	.	.	.
PTPRN	5798	hgsc.bcm.edu	36	2	219868018	219868018	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199764	exon19	c.G2328A	p.T776T	.	.	.
UBAC1	10422	hgsc.bcm.edu	36	9	137976737	137976737	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016172	exon7	c.C834T	p.F278F	.	.	.
UBAC1	10422	hgsc.bcm.edu	36	9	137976740	137976740	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016172	exon7	c.C831T	p.I277I	.	.	.
CLN5	1203	hgsc.bcm.edu	36	13	76468155	76468155	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006493	exon3	c.A604G	p.M202V	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203070	112203070	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C3826T	p.Q1276X	APC,large_intestine,right,Substitution - Nonsense,0	.	.
SPARC	6678	hgsc.bcm.edu	36	5	151026117	151026117	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003118	exon8	c.C732T	p.D244D	.	.	.
GPRIN1	114787	hgsc.bcm.edu	36	5	175958752	175958752	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052899	exon2	c.G690A	p.P230P	.	.	.
SH3TC2	79628	hgsc.bcm.edu	36	5	148387675	148387675	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024577	exon11	c.C1813T	p.R605C	.	.	.