Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TRIOBP	11078	broad.mit.edu	36	22	36460718	36460719	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039141	exon9	c.4429_4430insG	p.W1477fs	.	.	.
PRICKLE3	4007	broad.mit.edu	36	X	48921347	48921348	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006150	exon7	c.894_895insA	p.H298fs	.	.	.
SLC12A9	56996	broad.mit.edu	36	7	100294458	100294458	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020246	exon6	c.T823C	p.F275L	.	.	.
MKLN1	4289	broad.mit.edu	36	7	130801628	130801628	+	Silent	SNP	A	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013255	exon15	c.A1842G	p.R614R	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21623792	21623792	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003777	exon23	c.G4141T	p.V1381F	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48284481	48284481	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152701	exon15	c.G4509T	p.L1503F	.	.	.
PCLO	27445	broad.mit.edu	36	7	82602467	82602467	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033026	exon3	c.C2335T	p.P779S	.	.	.
CALCR	799	broad.mit.edu	36	7	92954234	92954234	+	Nonsense_Mutation	SNP	G	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001164737	exon4	c.C50G	p.S17X	.	.	.
SMURF1	57154	broad.mit.edu	36	7	98472676	98472676	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020429	exon16	c.G1837A	p.E613K	.	.	.
MATN4	8785	broad.mit.edu	36	20	43366711	43366711	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003833	exon3	c.C214T	p.R72C	.	.	.
ADNP	23394	broad.mit.edu	36	20	48941392	48941392	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015339	exon5	c.A3266G	p.H1089R	.	.	.
NFATC2	4773	broad.mit.edu	36	20	49573351	49573351	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012340	exon2	c.C836A	p.P279H	.	.	.
PCK1	5105	broad.mit.edu	36	20	55573983	55573983	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002591	exon10	c.G1586T	p.G529V	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104490527	104490527	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138420	exon7	c.C2306A	p.P769H	.	.	.
FOXG1	2290	broad.mit.edu	36	14	28307238	28307239	+	Nonsense_Mutation	DNP	CC	AG	AG	novel		TCGA-AF-3913-01	TCGA-AF-3913-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005249	exon1	c.1002_1003AG	.	.	.	.
SNW1	22938	broad.mit.edu	36	14	77275105	77275105	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012245	exon4	c.A383G	p.D128G	.	.	.
GAL3ST1	9514	broad.mit.edu	36	22	29283352	29283352	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004861	exon3	c.G28T	p.E10X	.	.	.
GCAT	23464	broad.mit.edu	36	22	36542521	36542521	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014291	exon9	c.C1110T	p.G370G	.	.	.
ATF4	468	broad.mit.edu	36	22	38248228	38248228	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001675	exon2	c.G731T	p.R244M	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23335541	23335541	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003430	exon4	c.A2080G	p.T694A	.	.	.
KIRREL2	84063	broad.mit.edu	36	19	41040143	41040143	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_199180	exon2	c.G118T	p.E40X	.	.	.
TBC1D17	79735	broad.mit.edu	36	19	55079818	55079818	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168222	exon12	c.G1336A	p.D446N	.	.	.
SPAG1	6674	broad.mit.edu	36	8	101265407	101265407	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003114	exon6	c.A536C	p.E179A	.	.	.
NUDCD1	84955	broad.mit.edu	36	8	110362573	110362573	+	Silent	SNP	A	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032869	exon6	c.T828G	p.P276P	.	.	.
EXT1	2131	broad.mit.edu	36	8	119191690	119191690	+	Silent	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000127	exon1	c.C777T	p.L259L	.	.	.
AGPAT6	137964	broad.mit.edu	36	8	41589551	41589551	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178819	exon8	c.G826T	p.V276L	.	.	.
ANK1	286	broad.mit.edu	36	8	41649331	41649331	+	Silent	SNP	G	A	A	rs61753678	unknown	TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020475	exon38	c.C4794T	p.H1598H	.	.	.
PRKDC	5591	broad.mit.edu	36	8	49018394	49018394	+	Silent	SNP	T	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081640	exon10	c.A894G	p.L298L	.	.	.
ST18	9705	broad.mit.edu	36	8	53191490	53191490	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014682	exon25	c.G2901A	p.E967E	.	.	.
OSGIN2	734	broad.mit.edu	36	8	91005913	91005913	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004337	exon6	c.A496G	p.K166E	.	.	.
EXTL2	2135	broad.mit.edu	36	1	101115829	101115829	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033025	exon3	c.G224C	p.R75T	.	.	.
NRAS	4893	broad.mit.edu	36	1	115058051	115058051	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002524	exon3	c.A183C	p.Q61H	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-2	.	.
SPAG17	200162	broad.mit.edu	36	1	118360142	118360142	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_206996	exon29	c.C4256A	p.S1419Y	.	.	.
FLG2	388698	broad.mit.edu	36	1	150595380	150595380	+	Silent	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014342	exon3	c.C1506A	p.S502S	.	.	.
LCE3D	84648	broad.mit.edu	36	1	150818886	150818886	+	Missense_Mutation	SNP	C	T	T	rs61746420	unknown	TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032563	exon2	c.G151A	p.G51S	.	.	.
UBAP2L	9898	broad.mit.edu	36	1	152490734	152490734	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014847	exon14	c.C1645A	p.L549M	.	.	.
RAB25	57111	broad.mit.edu	36	1	154302424	154302424	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020387	exon2	c.G142C	p.E48Q	.	.	.
CTRC	11330	broad.mit.edu	36	1	15641555	15641555	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007272	exon4	c.G256A	p.V86M	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180030770	180030770	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000721	exon45	c.C6046T	p.R2016W	.	.	.
CYB5R1	51706	broad.mit.edu	36	1	201202323	201202323	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016243	exon3	c.G194A	p.R65H	.	.	.
OPN3	23596	broad.mit.edu	36	1	239834377	239834377	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014322	exon2	c.G501A	p.A167A	.	.	.
GJA4	2701	broad.mit.edu	36	1	35033064	35033064	+	Silent	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002060	exon2	c.G663A	p.L221L	.	.	.
RIMS3	9783	broad.mit.edu	36	1	40874247	40874247	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014747	exon4	c.G287A	p.R96Q	.	.	.
FPGT	8790	broad.mit.edu	36	1	74442791	74442791	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003838	exon4	c.A472C	p.M158L	.	.	.
PIK3C2A	5286	broad.mit.edu	36	11	17095661	17095661	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002645	exon18	c.G3169C	p.G1057R	.	.	.
OR4C11	219429	broad.mit.edu	36	11	55127957	55127957	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001004700	exon1	c.C469A	p.Q157K	.	.	.
APLNR	187	broad.mit.edu	36	11	56760062	56760062	+	Silent	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005161	exon1	c.C993T	p.C331C	.	.	.
PDE7B	27115	broad.mit.edu	36	6	136471564	136471564	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018945	exon3	c.G85C	p.D29H	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143132397	143132397	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006734	exon5	c.G5172T	p.W1724C	.	.	.
ATF6B	1388	broad.mit.edu	36	6	32196811	32196811	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004381	exon7	c.G633A	p.W211X	.	.	.
FRS3	10817	broad.mit.edu	36	6	41846450	41846450	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006653	exon7	c.A1364G	p.Y455C	.	.	.
GPR116	221395	broad.mit.edu	36	6	46957245	46957245	+	Silent	SNP	T	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098518	exon8	c.A720G	p.S240S	.	.	.
C17orf48	56985	broad.mit.edu	36	17	10549186	10549186	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020233	exon2	c.G218C	p.G73A	.	.	.
MAP2K3	5606	broad.mit.edu	36	17	21142828	21142828	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	A	C	A	Unknown	Valid	Germline	Phase_I	Unspecified	454			Illumina	NM_002756	exon3	c.C75A	p.D25E	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64425149	64425149	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_007168	exon15	c.G1966A	p.A656T	.	.	.
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.
COL6A2	1292	broad.mit.edu	36	21	46373649	46373649	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_058174	exon28	c.C2573T	p.T858M	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20882619	20882619	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	T	C	T	Unknown	Valid	Germline	Phase_I	Unspecified	454			Illumina	NM_017539	exon53	c.G10088A	p.R3363H	.	.	.
CACNG3	10368	broad.mit.edu	36	16	24273710	24273710	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006539	exon3	c.C351T	p.F117F	.	.	.
WDR5B	54554	broad.mit.edu	36	3	123616243	123616243	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_019069	exon1	c.G823A	p.E275K	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131783265	131783265	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001102608	exon8	c.G3718C	p.A1240P	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131828075	131828075	+	Silent	SNP	C	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102608	exon24	c.C4935A	p.G1645G	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50454352	50454352	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014191	exon20	c.C3758A	p.A1253D	.	.	.
STAT2	6773	broad.mit.edu	36	12	55036510	55036510	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198332	exon2	c.G113A	p.W38X	.	.	.
NAB2	4665	broad.mit.edu	36	12	55771514	55771514	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005967	exon2	c.G423A	p.M141I	.	.	.
FAM90A1	55138	broad.mit.edu	36	12	8265891	8265891	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018088	exon7	c.C1189T	p.R397W	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83781366	83781366	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_182767	exon11	c.G1801A	p.A601T	.	.	.
ANO4	121601	broad.mit.edu	36	12	99937973	99937973	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178826	exon8	c.C660A	p.F220L	.	.	.
RYR3	6263	broad.mit.edu	36	15	31732248	31732248	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001036	exon32	c.G4180C	p.D1394H	.	.	.
SORD	6652	broad.mit.edu	36	15	43152995	43152995	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003104	exon9	c.G1049T	p.C350F	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50326497	50326497	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018728	exon16	c.A1888T	p.S630C	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52329918	52329918	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080534	exon6	c.C3432T	p.N1144N	.	.	.
TLN2	83660	broad.mit.edu	36	15	60737285	60737285	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015059	exon6	c.C684T	p.G228G	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82349901	82349901	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_207517	exon11	c.G1109C	p.R370P	.	.	.
PRSS12	8492	broad.mit.edu	36	4	119423671	119423671	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003619	exon12	c.T2083G	p.Y695D	.	.	.
FABP2	2169	broad.mit.edu	36	4	120461432	120461432	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000134	exon2	c.G81A	p.V27V	.	.	.
KIAA1712	80817	broad.mit.edu	36	4	175462002	175462002	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001040157	exon6	c.T414A	p.S138R	.	.	.
FAT1	2195	broad.mit.edu	36	4	187772385	187772385	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005245	exon12	c.G9183A	p.T3061T	.	.	.
SGCB	6443	broad.mit.edu	36	4	52594397	52594397	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000232	exon2	c.G200T	p.C67F	.	.	.
DSPP	1834	broad.mit.edu	36	4	88752348	88752348	+	Nonsense_Mutation	SNP	C	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014208	exon3	c.C119G	p.S40X	.	.	.
LONRF3	79836	broad.mit.edu	36	X	118031077	118031077	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024778	exon8	c.T1736A	p.F579Y	.	.	.
WNK3	65267	broad.mit.edu	36	X	54280455	54280455	+	Silent	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002838	exon20	c.C4128T	p.S1376S	.	.	.
CPXCR1	53336	broad.mit.edu	36	X	87895152	87895152	+	Silent	SNP	T	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184771	exon3	c.T81C	p.C27C	.	.	.
GTDC1	79712	broad.mit.edu	36	2	144481417	144481417	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164629	exon7	c.G677A	p.C226Y	.	.	.
FIGN	55137	broad.mit.edu	36	2	164174487	164174487	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018086	exon3	c.G2101A	p.V701M	.	.	.
TTN	7273	broad.mit.edu	36	2	179136566	179136566	+	Silent	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.C55343T	p.A18448V	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208871734	208871734	+	Missense_Mutation	SNP	C	T	T	rs61752183	unknown	TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178000	exon8	c.C1036T	p.R346C	.	.	.
SLC19A3	80704	broad.mit.edu	36	2	228261143	228261143	+	Silent	SNP	A	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025243	exon5	c.T1297C	p.L433L	.	.	.
KCNK3	3777	broad.mit.edu	36	2	26804094	26804094	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002246	exon2	c.C339T	p.Y113Y	.	.	.
ALLC	55821	broad.mit.edu	36	2	3708418	3708418	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018436	exon7	c.C390T	p.D130D	.	.	.
KIAA1841	84542	broad.mit.edu	36	2	61214799	61214799	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032506	exon21	c.C2052T	p.D684D	.	.	.
EIF2AK2	5610	broad.mit.edu	36	2	37206998	37206998	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AF-3913-01	TCGA-AF-3913-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002759	exon11	c.846delC	p.F282fs	.	.	.
ANKS6	203286	broad.mit.edu	36	9	100553164	100553164	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_173551	exon13	c.G2362C	p.E788Q	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113196336	113196336	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080398	exon27	c.C3381G	p.N1127K	.	.	.
KIAA1045	23349	broad.mit.edu	36	9	34967130	34967130	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015297	exon6	c.C900T	p.A300A	.	.	.
ZNF658	26149	broad.mit.edu	36	9	40764130	40764130	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033160	exon5	c.T1145A	p.L382H	.	.	.
GLIS3	169792	broad.mit.edu	36	9	4108682	4108682	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152629	exon3	c.T331A	p.S111T	.	.	.
C9orf103	414328	broad.mit.edu	36	9	85433667	85433667	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190727	exon2	c.G110A	p.W37X	.	.	.
SYK	6850	broad.mit.edu	36	9	92676932	92676932	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174168	exon8	c.G1092T	p.K364N	.	.	.
ING1	3621	broad.mit.edu	36	13	110170026	110170026	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198219	exon2	c.C586T	p.R196X	.	.	.
NOLC1	9221	broad.mit.edu	36	10	103902166	103902166	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004741	exon1	c.C9T	p.D3D	.	.	.
PDZD8	118987	broad.mit.edu	36	10	119032828	119032828	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_173791	exon5	c.G3406C	p.D1136H	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55666629	55666629	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142767	exon8	c.G834A	p.P278P	.	.	.
TET1	80312	broad.mit.edu	36	10	70120740	70120740	+	Silent	SNP	A	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030625	exon12	c.A5574T	p.T1858T	.	.	.
DLG5	9231	broad.mit.edu	36	10	79249717	79249717	+	Silent	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004747	exon16	c.G3468A	p.S1156S	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93774527	93774527	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003972	exon35	c.C4898A	p.T1633N	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98797518	98797518	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003061	exon16	c.G1553A	p.R518H	.	.	.
PPIP5K2	23262	broad.mit.edu	36	5	102512840	102512840	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015216	exon7	c.G830A	p.G277E	.	.	.
FTMT	94033	broad.mit.edu	36	5	121215916	121215916	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_177478	exon1	c.G359A	p.R120Q	.	.	.
PCDHA12	56137	broad.mit.edu	36	5	140236523	140236523	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031864	exon1	c.C1282T	p.R428W	.	.	.
RUFY1	80230	broad.mit.edu	36	5	178953221	178953221	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025158	exon11	c.C1382T	p.A461V	.	.	.
CDH9	1007	broad.mit.edu	36	5	26941864	26941864	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016279	exon5	c.C772A	p.L258M	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37157569	37157569	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_023073	exon48	c.C8930T	p.S2977L	.	.	.
LIFR	3977	broad.mit.edu	36	5	38518489	38518489	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127671	exon19	c.G2629T	p.E877X	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41043226	41043226	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_173489	exon34	c.G3696C	p.W1232C	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80511802	80511802	+	Silent	SNP	G	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006909	exon18	c.G2739C	p.T913T	.	.	.
APC	324	broad.mit.edu	36	5	112203145	112203145	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AF-3913-01	TCGA-AF-3913-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.3901delC	p.P1301fs	APC,central_nervous_system,cerebellum,Substitution - Missense,-1	.	.
KIAA0495	57212	broad.mit.edu	36	1	3652355	3652355	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	.	.	.	.	.	.	.