Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MOGAT3	346606	hgsc.bcm.edu	36	7	100626328	100626328	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178176	exon6	c.C731A	p.A244D	.	.	.
GMFB	2764	hgsc.bcm.edu	36	14	54020168	54020168	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004124	exon2	c.G71T	p.R24L	.	.	.
MAP3K9	4293	hgsc.bcm.edu	36	14	70269300	70269300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033141	exon12	c.C2581T	p.R861C	.	.	.
LARGE	9215	hgsc.bcm.edu	36	22	32330485	32330485	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133642	exon5	c.C551T	p.T184M	.	.	.
ZNF420	147923	hgsc.bcm.edu	36	19	42310354	42310354	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_144689	exon5	c.C621A	p.S207R	.	.	.
SLC8A2	6543	hgsc.bcm.edu	36	19	52661189	52661189	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015063	exon2	c.C284T	p.A95V	.	.	.
LILRB2	10288	hgsc.bcm.edu	36	19	59475530	59475530	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001080978	exon4	c.C283T	p.R95X	.	.	.
C3	718	hgsc.bcm.edu	36	19	6629219	6629221	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	CTC	CTC	CTC	-	CTC	CTC	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000064	exon40	c.4792_4794del	p.1598_1598del	.	.	.
DKK4	27121	hgsc.bcm.edu	36	8	42352381	42352381	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014420	exon2	c.G236C	p.C79S	.	.	.
FLG	2312	hgsc.bcm.edu	36	1	150549371	150549371	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002016	exon3	c.A4615C	p.S1539R	.	.	.
TADA1L	117143	hgsc.bcm.edu	36	1	165099751	165099751	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_053053	exon4	c.T264C	p.G88G	.	.	.
CRB1	23418	hgsc.bcm.edu	36	1	195713423	195713423	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_201253	exon12	c.G4012T	p.D1338Y	.	.	.
PINK1	65018	hgsc.bcm.edu	36	1	20849633	20849633	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032409	exon8	c.C1608T	p.A536A	.	.	.
KIAA1804	84451	hgsc.bcm.edu	36	1	231548883	231548883	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032435	exon2	c.C878T	p.A293V	.	.	.
MRE11A	4361	hgsc.bcm.edu	36	11	93820232	93820232	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005591	exon15	c.A1584G	p.A528A	.	.	.
SLC22A16	85413	hgsc.bcm.edu	36	6	110852802	110852802	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033125	exon8	c.G1701A	p.A567A	.	.	.
VARS2	57176	hgsc.bcm.edu	36	6	30994608	30994608	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167733	exon10	c.A591C	p.T197T	.	.	.
EFTUD2	9343	hgsc.bcm.edu	36	17	40297872	40297872	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004247	exon14	c.C1237T	p.R413C	.	.	.
HYDIN	54768	hgsc.bcm.edu	36	16	69623299	69623299	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032821	exon19	c.C2552T	p.T851M	.	.	.
ST8SIA3	51046	hgsc.bcm.edu	36	18	53178478	53178478	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015879	exon4	c.C1115A	p.T372N	.	.	.
SERPINB13	5275	hgsc.bcm.edu	36	18	59415525	59415525	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012397	exon8	c.G1124T	p.R375M	.	.	.
TIPARP	25976	hgsc.bcm.edu	36	3	157896468	157896468	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015508	exon4	c.C1207A	p.P403T	.	.	.
SLITRK3	22865	hgsc.bcm.edu	36	3	166390496	166390496	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014926	exon2	c.C817T	p.R273X	.	.	.
ATP13A5	344905	hgsc.bcm.edu	36	3	194563763	194563763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198505	exon3	c.C340T	p.R114C	.	.	.
BSN	8927	hgsc.bcm.edu	36	3	49637516	49637516	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003458	exon2	c.G329A	p.R110Q	.	.	.
ZNF518B	85460	hgsc.bcm.edu	36	4	10056426	10056426	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_053042	exon3	c.A625G	p.T209A	.	.	.
DKK2	27123	hgsc.bcm.edu	36	4	108064651	108064651	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014421	exon4	c.G689A	p.R230H	.	.	.
ODZ1	10178	hgsc.bcm.edu	36	X	123608253	123608253	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014253	exon9	c.T1668C	p.P556P	.	.	.
SLITRK4	139065	hgsc.bcm.edu	36	X	142545782	142545782	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173078	exon2	c.T809C	p.F270S	.	.	.
ITGB1BP2	26548	hgsc.bcm.edu	36	X	70439088	70439088	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012278	exon4	c.G274C	p.V92L	.	.	.
DENND4C	55667	hgsc.bcm.edu	36	9	19348055	19348055	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017925	exon23	c.G4202T	p.R1401L	.	.	.
DAPK1	1612	hgsc.bcm.edu	36	9	89442679	89442679	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004938	exon4	c.G286A	p.V96I	.	.	.
TCF7L2	6934	hgsc.bcm.edu	36	10	114902176	114902176	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001146284	exon10	c.C1175T	p.A392V	.	.	.
HTR1A	3350	hgsc.bcm.edu	36	5	63292770	63292770	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000524	exon1	c.C533A	p.P178Q	.	.	.
PCDHB5	26167	hgsc.bcm.edu	36	5	140497449	140497449	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3582-01A-01W-0831-10	TCGA-AG-3582-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015669	exon1	c.A2249G	p.Y750C	.	.	.